View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12518_high_4 (Length: 419)
Name: NF12518_high_4
Description: NF12518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12518_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 15 - 404
Target Start/End: Complemental strand, 4175277 - 4174882
Alignment:
| Q |
15 |
accaagtccaaatggggataccttcttggaattcttggatgggtctaaaatacttgcaaaggttagtcattg--------tgatttatggtgtgtttggt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4175277 |
accaagtccaaatggggataccttcttggaatttttggatgggtctaaaatacttgcaaaggttagtcattgactcattgtgatttatggtgtgtttggt |
4175178 |
T |
|
| Q |
107 |
gttgaaatttactcattcaaccgtgattttattatttttaccgaacttagttgaaaaagcatttggcttttgtcaaatgtgtttaaacacgattctaatn |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4175177 |
gttgaaatttactcattcaaccgtgattttatt---tttaccgaacttagttgaaaaaacatttggcttgtgtcaaatgtgtttaaacacgattctaata |
4175081 |
T |
|
| Q |
207 |
nnnnnnn-tatataaagctaagcacatacatgattggttatgactctaaaaacatagtgcagaaaaggatcttacaaacataatggccaatcatgaagct |
305 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4175080 |
aaaatatatatatgaagctaagcacatatatgattggttatgactctaaaaacatagtgcagaaaaggatcttacaaacataatggccaatcatgaagct |
4174981 |
T |
|
| Q |
306 |
ctggtcctaaaaactattaacaaattgatttcatgtctcaacagattgtaatagggtgcgacggcattcgatccccgatagctaagtggatgggatttt |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4174980 |
ctggtcctaaaaactattaacaaattgatttcatgtctcaacagattgtaatagggtgcgacggcattcgatccccgatagctaagtggatgggatttt |
4174882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 15 - 404
Target Start/End: Complemental strand, 4171287 - 4170887
Alignment:
| Q |
15 |
accaagtccaaatggggataccttcttggaattcttggatgggtctaaaatacttgcaaaggttagtcattgtgatttatggtgtgtttggtgttgaaat |
114 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4171287 |
accaagtccaaatggggataccttattggaattcttggatgggtctaaactagttgcaaaggttagtcattgtaatttatggtgtgtttggtgttgaaag |
4171188 |
T |
|
| Q |
115 |
ttactcattcaaccgtgattttattatttttaccgaacttagttgaaaaagcatttggcttttgt--caaatgtgtttaaacacgattctaatnnnnnnn |
212 |
Q |
| |
|
||||| |||||||| ||||||||||| | || | |||| |||||| ||| ||||||| || ||| ||| |||||||||||| |||||| || |
|
|
| T |
4171187 |
ttacttattcaaccatgattttattagtatttacaaactcagttgacaaaacatttggtttctgttccaactgtgtttaaacatgattctgatgaaaaaa |
4171088 |
T |
|
| Q |
213 |
nta------tataaagctaagcacatacatgattggttatgactctaaaaacatagtgcagaaaaggatcttacaaaca-------taatggccaatcat |
299 |
Q |
| |
|
| ||| ||||||| | |||||||||||| |||| | |||||||| |||| |||||||||||||| ||| |||| |||||| | |
|
|
| T |
4171087 |
aaaacatactattaagctaacc----acatgattggttgtgaccatgaaaacatactgcacaaaaggatcttacagacataaacattaatagccaattct |
4170992 |
T |
|
| Q |
300 |
gaagctctggtcctaaaaactattaacaaattgatttcatgtctcaacagattgtaatagggtgcgacggcattcgatccccgatagctaagtggatggg |
399 |
Q |
| |
|
|||||| | |||||||||| | |||||||||||||| ||||| | ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
4170991 |
gaagctttagtcctaaaaagtcttaacaaattgattccatgtataaacagattgtaatagggtgcgacggaattcgatcaccgatagctaagtggatggg |
4170892 |
T |
|
| Q |
400 |
atttt |
404 |
Q |
| |
|
||||| |
|
|
| T |
4170891 |
atttt |
4170887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University