View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12518_high_5 (Length: 401)
Name: NF12518_high_5
Description: NF12518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12518_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 39 - 390
Target Start/End: Complemental strand, 19291883 - 19291532
Alignment:
| Q |
39 |
atcaaagccttgcacattcccttaccccaccgatcaaaaacctcgtccgnnnnnnnttaaactgcaaaacttaacttttaacgagcctctgcccttggaa |
138 |
Q |
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| T |
19291883 |
atcaaagccttgcacaatcccttaccccaccgatcaaaaacctcgtctgaaaaaaattgaactgcaaaactttgcttttaacgagcctctgcacttggaa |
19291784 |
T |
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| Q |
139 |
ataggacacctaatattgaccatgttatcttcaagcttggaaccgatgtatttcgccatggaatcagaggaatatgcgtgagagctgccaccgatataga |
238 |
Q |
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| T |
19291783 |
ataggacaccgaatattgaccatgttatcttcaagcttggaaccgatgtatttcgccatgcaatcagaggaatatgcgtgagagctgccaccgatataga |
19291684 |
T |
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| Q |
239 |
tagcgcccttcattgttttagtatgggggcaaattttgcacactcaactttttcgattttgtttcttgtagggtttccagaagggatagtttagggaatg |
338 |
Q |
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| T |
19291683 |
aagcacccttcattgttttagtatgggggcaaattttgcacactcaactttttcgattttgtttcttgtagggtttccagaagggatggtttagggaatg |
19291584 |
T |
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| Q |
339 |
aaattgatggttctaatggcatgtcttcgcagtcatcagaaaggtggttcat |
390 |
Q |
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| T |
19291583 |
aaattgatggttctaatggcatgtcttcgcagtcatcagaaaggtggttcat |
19291532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 141 - 260
Target Start/End: Complemental strand, 19270450 - 19270331
Alignment:
| Q |
141 |
aggacacctaatattgaccatgttatcttcaagcttggaaccgatgtatttcgccatggaatcagaggaatatgcgtgagagctgccaccgatatagata |
240 |
Q |
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| T |
19270450 |
aggacaccgaatattaacgatgttatcttcaagtttggaacctatgtatgatgccacacaatccgagcaataagcatgagagcaaccgctgatgtaaata |
19270351 |
T |
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| Q |
241 |
gcgcccttcattgttttagt |
260 |
Q |
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||| |||||||||||||||| |
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| T |
19270350 |
gcgtccttcattgttttagt |
19270331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 141 - 260
Target Start/End: Complemental strand, 19314738 - 19314619
Alignment:
| Q |
141 |
aggacacctaatattgaccatgttatcttcaagcttggaaccgatgtatttcgccatggaatcagaggaatatgcgtgagagctgccaccgatatagata |
240 |
Q |
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||||||| ||| ||||| ||||| ||||||||||||||||| ||||| | |||| | |||||||| ||||| ||||||| | || | ||| |||| | |
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| T |
19314738 |
aggacactgaattttgacgatgttttcttcaagcttggaaccaatgtacatggccacgcaatcagagcaatatacgtgagaacaaccgctgatgtagaaa |
19314639 |
T |
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| Q |
241 |
gcgcccttcattgttttagt |
260 |
Q |
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|| |||||||||||||||| |
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| T |
19314638 |
gcatccttcattgttttagt |
19314619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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