View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12518_low_12 (Length: 394)
Name: NF12518_low_12
Description: NF12518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12518_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 87 - 386
Target Start/End: Complemental strand, 6236914 - 6236615
Alignment:
| Q |
87 |
atttttggtcgttcgattttgtgttgttgtactgccaacttagttgagatgataatcactttctttaattcagaacacaagtttatatgtttnnnnnnnn |
186 |
Q |
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| T |
6236914 |
atttttggtcgttcggttttgtgttgttgtactgccaacttagttgagatgataatcactttctttaattcagaacacaagtttatatgtttaaaaaaaa |
6236815 |
T |
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| Q |
187 |
tatctaaattcatcaaacattttaatttttgattagattttcacctatctaaatatctaaagtctcagttgtgtttgctctcacatacaccgggaaggga |
286 |
Q |
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| T |
6236814 |
tatctaaattcatcaaacattttaatttttgattagattttcacctatctaaatatctaaagtctcacttgtgtttgctctcacatacaccgggaaggga |
6236715 |
T |
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| Q |
287 |
atgcagctgctgacgctatggtgaaaaatacgaagagtttacctaccttctcttctcaatggaggatctcaccacccagctttattgcttcttctctctc |
386 |
Q |
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| T |
6236714 |
atgcagctgctgacgctatggcgaaaaatacgaagagtttacctaccttctcttctcaatggaggatctcaccaccctgctttattgcttcttttctctc |
6236615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 109 - 231
Target Start/End: Original strand, 33891693 - 33891819
Alignment:
| Q |
109 |
gttgttgtactgccaacttagttgagatgataatcactttctttaattcagaacacaagtttatatgtttnnnnnnnnt-atctaaattcatcaaacatt |
207 |
Q |
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|||||||| |||||| ||| ||||||||| ||||||||||||| |||||||||||| ||||||| || | |||||||||||||||||||| |
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| T |
33891693 |
gttgttgtgttgccaatttaattgagatgacaatcactttctttgtttcagaacacaaatttatatattaaaaaataataatctaaattcatcaaacatt |
33891792 |
T |
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| Q |
208 |
ttaattt---ttgattagattttcacc |
231 |
Q |
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| T |
33891793 |
ttaatttcaatcgattagattttcacc |
33891819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 109 - 231
Target Start/End: Complemental strand, 33952555 - 33952429
Alignment:
| Q |
109 |
gttgttgtactgccaacttagttgagatgataatcactttctttaattcagaacacaagtttatatgtttnnnnnnnnt-atctaaattcatcaaacatt |
207 |
Q |
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|||||||| |||||| ||| ||||||||| ||||||||||||| |||||||||||| ||||||| || | |||||||||||||||||||| |
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| T |
33952555 |
gttgttgtgttgccaatttaattgagatgacaatcactttctttgtttcagaacacaaatttatatattaaaaaataataatctaaattcatcaaacatt |
33952456 |
T |
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| Q |
208 |
ttaattt---ttgattagattttcacc |
231 |
Q |
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| T |
33952455 |
ttaatttcaatcgattagattttcacc |
33952429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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