View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12518_low_13 (Length: 389)
Name: NF12518_low_13
Description: NF12518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12518_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 27178065 - 27177701
Alignment:
| Q |
1 |
actagaagaatgaaaacagtaaattgattcattcacgagaaatgaagtttgatttgccacattcgaagtggataacagagaaaaagacaacatatgcaag |
100 |
Q |
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| T |
27178065 |
actagaagaatgaaaacagtaagttaattcattcacgagaaatgaagtttgatttgccacattcgaagtggatatcagagaaaaagacaacatatgcaag |
27177966 |
T |
|
| Q |
101 |
ctggtgtaagtttgtcctgcaagtattatacataaatatgaaacaagagtggcgtgtagggtcatagatagtaaaagaaaacagtatacttgtttaggaa |
200 |
Q |
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| T |
27177965 |
ctggtgtaagtttgtcctgcaagtattatacataaatatgaaacaagagtggcgtgtagggtcatagatagtaaaagaaaacagtatacttgtttaggaa |
27177866 |
T |
|
| Q |
201 |
aagaaacattcttctgcatgggaggaacgtgaatataactactgatgaaagtgatggtggtgcaatggcagcatatagtggggttaacttagaagcagat |
300 |
Q |
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| T |
27177865 |
aacaaacattcttctgcatgggaggaacgtga--ataactactgatgaaagtgatggtggtgcaatggcagcatatagtggggttaacttagaagcagat |
27177768 |
T |
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| Q |
301 |
aaagaatctctcaatatcaatggctataatatatcgaaaattactcttattcacttgattcagggag |
367 |
Q |
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|||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
27177767 |
aaagaatccctcgatatcaatggctataatatgtcgaaaattactcttattcacttgatccagggag |
27177701 |
T |
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