View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12518_low_16 (Length: 357)
Name: NF12518_low_16
Description: NF12518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12518_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 345
Target Start/End: Complemental strand, 9235072 - 9234746
Alignment:
| Q |
19 |
ggtactgcataacggtgaatagaatacacctgtaatttggttagaagtggttttgaatctttttattgcacatagaaataccggtagtcacctttgtaca |
118 |
Q |
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| T |
9235072 |
ggtactgcataacggtgaatagaatacacctgtaatttggttagaagtggttttgaatcttttaattgcacatagaaataccggtagtcacctttgtaca |
9234973 |
T |
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| Q |
119 |
tttggataggattgttccannnnnnnnngtcaatatgataatatgtgaaggctttctagttttgtttctcaaatcgattctgggtggcaatgccgttaat |
218 |
Q |
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| T |
9234972 |
tttggataggattgttccatttttttttgtcaatatgataatatgtgaaggctttctagttttgtttctcaaatcgattctgggtggcaatgccgttaat |
9234873 |
T |
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| Q |
219 |
cttatgtgaagtgtttgtattacgggtcaagagtcaagaaaaaaggattgaaggatagaagttttgatgtcatattcattttcacataccaacagtttta |
318 |
Q |
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| T |
9234872 |
cttatgtgaagtgtttgtattaggggtcaagagtcaagaaaacaggattgaaggaaagaagttttgatgtcatattcattttcacataccaacagtttta |
9234773 |
T |
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| Q |
319 |
ctgacccagtttcttgcttccgtttca |
345 |
Q |
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| T |
9234772 |
ctgacccagtttcttgcttccgtttca |
9234746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 27 - 278
Target Start/End: Complemental strand, 9246649 - 9246390
Alignment:
| Q |
27 |
ataacggtgaatagaatacacctgtaatttggttagaagtggttttgaatctttttattgcacatagaaataccggtagtcacctttgtacatttggata |
126 |
Q |
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| T |
9246649 |
ataacggtgaatagaatacagctgcaatttggttagaagtggttttgaatcttttgattgcacatagaaataccagaagtcacctttgtacattttgata |
9246550 |
T |
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| Q |
127 |
ggattgttcc-------annnnnnnnngtcaatatgataatatgtgaaggc-tttctagttttgtttctcaaatcgattctgggtggcaatgccgttaat |
218 |
Q |
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| T |
9246549 |
ggattgttcctttttttttttttttttgtcaaaatgataacctgagagtgcttttctagttctgtttctcaaattgattatggatggcaatgccgttgat |
9246450 |
T |
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| Q |
219 |
cttatgtgaagtgtttgtattacgggtcaagagtcaagaaaaaaggattgaaggatagaa |
278 |
Q |
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| T |
9246449 |
cttatgtgaagtgtttatatgaggggtaaagagtcaagaaaacaggattgaaggaaagaa |
9246390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 9264807 - 9264703
Alignment:
| Q |
32 |
ggtgaatagaatacacctgtaatttggttagaagtggttttgaatctttttattgcacatagaaataccggtagtcacctttgtacatttggataggatt |
131 |
Q |
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| T |
9264807 |
ggtgaatagaatacagctgcaatttggttagaagtggtttcgaatcttttgattgcacatagaaataccggtagtcacctttgtacatttggataggatt |
9264708 |
T |
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| Q |
132 |
gttcc |
136 |
Q |
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| T |
9264707 |
gttcc |
9264703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 9254807 - 9254733
Alignment:
| Q |
26 |
cataacggtgaatagaatacacctgtaatttggttagaagtggttttgaatctttttattgcacatagaaatacc |
100 |
Q |
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| T |
9254807 |
cataacggtgaatagaatacacctccgatttggttagaagttgttttgaatcttttgattgcacatagaaatacc |
9254733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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