View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12518_low_18 (Length: 336)
Name: NF12518_low_18
Description: NF12518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12518_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 17 - 325
Target Start/End: Original strand, 29606057 - 29606365
Alignment:
| Q |
17 |
attaccaactataatccctgctgcaccttccaagttgccaacggcagcttcaccaacttctactacaccatccgctgctaaaaaaccacctattgtcgta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29606057 |
attaccaactataatccctgctgcaccttccaagttgccaacggcagcttcaccaacttctagtacaccatccgctgctaaaaaaccacctattgtcgta |
29606156 |
T |
|
| Q |
117 |
gcaacttctcccttgtctagcaaacaaccaaccaccactcaaccgcctacaactgcaaaatcatcccctgtaaaatcaccagttcctaaagttacgtctc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29606157 |
gcaacttctcccttgtctagcaaacaaccaaccaccactcaaccgcctacaactgcaaaatcatcccctgtaaaatcaccagttcctaaagttacgtctc |
29606256 |
T |
|
| Q |
217 |
cagcatcttcccctgtgaagtcaccagtccccaaagtcgcgaccccaacatctgctcccgtgaagtcaccagttccaaaagctacgactccaacatctgc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29606257 |
cagcatcttcccctgtgaagtcaccagtccccaaagtcgcgaccccaacatctgctcccgtgaagtcaccagttccaaaagctacgactccaacatctgc |
29606356 |
T |
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| Q |
317 |
tccagtgaa |
325 |
Q |
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||| ||||| |
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| T |
29606357 |
tcctgtgaa |
29606365 |
T |
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