View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12518_low_2 (Length: 743)
Name: NF12518_low_2
Description: NF12518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12518_low_2 |
 | |
|
| [»] chr4 (21 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 21)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 743
Target Start/End: Complemental strand, 5035803 - 5035076
Alignment:
| Q |
18 |
aacaacaccttcaaccttcctcgtcctgatgggaatctaggtttcaccgataacccccgcagaataaggtctctctaccacgtctcaaaacaagatctgt |
117 |
Q |
| |
|
|||||||| ||||| |||| ||||||| |||||||||||||||| ||||| ||||||||||||||| ||||||||| ||||||||| |||||||| || |
|
|
| T |
5035803 |
aacaacacattcaaacttcttcgtcctaatgggaatctaggttttgccgatcacccccgcagaataaagtctctctatcacgtctcagaacaagatatgc |
5035704 |
T |
|
| Q |
118 |
ccatcaccaacagtagtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctac |
217 |
Q |
| |
|
| ||||| |||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| | || || |
|
|
| T |
5035703 |
caatcacaaacagtagtttcaggtctctttccttcgtttcaaaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctctgaggcaac |
5035604 |
T |
|
| Q |
218 |
actccctttccttaatcgtctctttgaaaggttccctaatattacatcacttaatatcactctctctccttaagg--gggaccgagaagccgacctcggc |
315 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| || | | | || ||||||||| |||||||| |
|
|
| T |
5035603 |
aatccctttccttagtcgtctctttgaaaggttccctaatattacatcactcaatatcactctcacttccaatgcctggtcccgagaagctcacctcggc |
5035504 |
T |
|
| Q |
316 |
gagcttctagtccaaatctctacttcctctttatacctcaaatcactcactctctaccatcctgacagggcacataaaaatgagttccgagctttgtcca |
415 |
Q |
| |
|
||| |||||| ||||||| ||||| ||||| |||||||||| |||||||| ||||| ||| ||||| | | |||||||||| |||||||||||| |
|
|
| T |
5035503 |
gagtttctagcgaaaatctccgcttcccctttaaacctcaaatcgctcactctttaccacgctgtcagggttcctgaaaatgagttgcgagctttgtccg |
5035404 |
T |
|
| Q |
416 |
agaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcgaaga |
515 |
Q |
| |
|
|||||||||||| ||| || |||||| ||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||| |||||||| |
|
|
| T |
5035403 |
agaagatgaaaagtttaacgtctctcgcttgttatcaaatgagatttatcaacaagaatgatcttttcttgattgctgattgtttccctttactcgaaga |
5035304 |
T |
|
| Q |
516 |
actcatccttaccgacactggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgctttaactagt |
615 |
Q |
| |
|
||| |||||||| || |||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5035303 |
actaatccttactgatactggttgtccccataattgtgctatagatagtgatgatcaattcttagcgcttcccaaactccgcaggattgctttaactagt |
5035204 |
T |
|
| Q |
616 |
aatatcgtcggtggacactcaattaagaatctctgcaagagctgtgaccttcttcaagaggtcaaagtggttggtggtcgtgttgcaagatatgcgtttc |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5035203 |
aatatcgtcggtggacactcaattaagaatctctgcaagagctgtgaccttcttcaagaggtcaaagtggttggtggtcgtgttgctcgatatgcgtttc |
5035104 |
T |
|
| Q |
716 |
gtggtcctcgtcctcctctacaatatca |
743 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
5035103 |
gtggtcctcgtcctcctctacaatatca |
5035076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 693
Target Start/End: Complemental strand, 2525938 - 2525262
Alignment:
| Q |
18 |
aacaacaccttcaaccttcctcgtcctgatgggaatctaggttt-caccgataacccccgcagaataaggtctctctaccacgtctcaaaacaagatctg |
116 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||| ||||||| || | ||| || ||||||||| | ||||||||||||||||||||||| ||| |
|
|
| T |
2525938 |
aacaacaccttcaaccttcttcgtcttgatgggaatataggttttcaac-atatccagcgcagaataggaactctctaccacgtctcaaaacaatctcta |
2525840 |
T |
|
| Q |
117 |
tccatcaccaacagtagtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagcta |
216 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||| ||||||||| || | |
|
|
| T |
2525839 |
cccatcaccaacggtagtttcagatctctctccctcgtctcaaaacagtttctgtccatcaccaacagtcttcgattcttggtcacaatctccaatgcaa |
2525740 |
T |
|
| Q |
217 |
cactccctttccttaatcgtctctttgaaaggttccctaatattacatcacttaatatcactctctctc-cttaa---gggggaccgagaagccgacctc |
312 |
Q |
| |
|
| ||||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| || | ||||| ||||||||| |||||| |
|
|
| T |
2525739 |
ctatcccttttcttaatcgtctctttgaaaggttccctaacattgcatcactcaatatcactctctctctctcgatgcgggggcccgagaagctgacctc |
2525640 |
T |
|
| Q |
313 |
ggcgagcttctagtccaaatctctacttcctctttatacctcaaatcactcactctctaccatcctgacagggcacataaaaatgagttccgagctttgt |
412 |
Q |
| |
|
| ||| ||||| ||||||||| |||| | ||||| |||||||||| |||||||||||||| || || || | | |||||||||| || | ||||| |
|
|
| T |
2525639 |
agtgagtttctaaaccaaatctccactttccctttagacctcaaatcgctcactctctaccacccccccaaggttcctcaaaatgagttgcgtgttttgt |
2525540 |
T |
|
| Q |
413 |
ccaagaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcga |
512 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| | |||||||||||||||||||| ||||| |
|
|
| T |
2525539 |
ccaagaaaatgaaaaatttgacatctctcacttgttatcaactgagatttattaacaagaatgatctgctcttcattgctgattgtttccctctactcga |
2525440 |
T |
|
| Q |
513 |
agaactcatccttaccgacactggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgctttaact |
612 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2525439 |
agaactcatccttaccgacactggttgtcgtagtaactgtgtgatagatagtgatgatcaattcttggcgcttcccaaactccgcaggattgctttaact |
2525340 |
T |
|
| Q |
613 |
agtaatatcgtcggtggacactcaattaagaatctctgcaagagctgtgaccttcttcaagaggtcaaagtggttggtggt |
693 |
Q |
| |
|
|| ||||| ||| ||||||| ||||||||||||||| || ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2525339 |
catactatcgcgggtcaacactcagttaagaatctctgcaggaactgtgac---cttcaagaggtcaaagtggttggtggt |
2525262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 220 - 693
Target Start/End: Complemental strand, 2534294 - 2533820
Alignment:
| Q |
220 |
tccctttccttaatcgtctctttgaaaggttccctaatattacatcacttaatatcactctctctccttaagggg---gaccgagaagccgacctc-ggc |
315 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| | | | || | ||| |||||||||||| ||| |
|
|
| T |
2534294 |
tccctttccttaaccgcctctttgaaaggttccctaatattacatcactcaatatcactctctcccgatgggtggtttgtccgtgaagccgacctctggc |
2534195 |
T |
|
| Q |
316 |
gagcttctagtccaaatctctacttcctctttatacctcaaatcactcactctctaccatcctgacagggcacataaaaatgagttccgagctttgtcca |
415 |
Q |
| |
|
||| |||||| | || ||||||||||| ||||| |||||||||| |||||||||||||| |||||||| | | | |||||||||||||||||||||||| |
|
|
| T |
2534194 |
gagtttctagccgaactctctacttccactttagacctcaaatcgctcactctctaccaccctgacagtgttcctgaaaatgagttccgagctttgtcca |
2534095 |
T |
|
| Q |
416 |
agaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcgaaga |
515 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||| | | ||||||||||||||||||| || ||||| |
|
|
| T |
2534094 |
agaagatgaaaaatttaacatctctcacttgttatcaaatgagctatatcaacaagaatgatctcttcttgattgctgattgtttccctttacttgaaga |
2533995 |
T |
|
| Q |
516 |
actcatccttaccgacactggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgctttaactagt |
615 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2533994 |
actcatccttaccgactctggttgtccccataattgtgcgatagatagtgatgatcaattcttggcgcttcccaaactccgcaggattgctttaactcat |
2533895 |
T |
|
| Q |
616 |
aatatcgtcggtggacactcaattaagaatctctgcaagagctgtgaccttcttcaagaggtcaaagtggttggtggt |
693 |
Q |
| |
|
||||||||| ||| ||||||||||| ||||||||||||| ||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
2533894 |
aatatcgtcagtgagcactcaattaaaaatctctgcaagaactgtgac---cttcaagagctcaaagtggttggtggt |
2533820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 132 - 684
Target Start/End: Complemental strand, 2491195 - 2490641
Alignment:
| Q |
132 |
agtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctacactccctttcctta |
231 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||| || || || ||||| | ||||| ||||||| | || ||| |||||||||||| |
|
|
| T |
2491195 |
agtttcaggtctctctcactcgtctcaaaacagtttctgtccatcacaaaccgtctccgattttcggtcacaatctccgatgcaacaatccctttcctta |
2491096 |
T |
|
| Q |
232 |
atcgtctctttgaaaggttccctaatattacatcacttaatatcactctctct--ccttaagggggaccgagaagccgacctcggcgagcttctagtcca |
329 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| | |||||||| |||||| || | || ||| ||||| |||||| |||||||||| | || |
|
|
| T |
2491095 |
atcgtctctttgaaaggttccctaacattacatcaatcaatatcaccctctcttcccgatacaggaacctagaagttgacctcagcgagcttcttggaca |
2490996 |
T |
|
| Q |
330 |
aatctctacttcctctttatacctcaaatcactcactctctaccatcctgacagggcacataaaaatgagttccgagctttgtccaagaagatgaaaaat |
429 |
Q |
| |
|
|||||| |||| | |||| |||||||||| ||| |||||||| | || ||||| | |||||| || |||||||||||| || |||||||||| |
|
|
| T |
2490995 |
aatctccactttccctttggacctcaaatcgctcgctctctacgagccaatcagggttcccgcaaatgaattgcgagctttgtccgggacgatgaaaaat |
2490896 |
T |
|
| Q |
430 |
ttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcgaagaactcatccttaccg |
529 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||||| | ||||||||||||||||||| ||||| ||||||||||| |||| |
|
|
| T |
2490895 |
ttgacatctctcacttgttatcgaatgaggtttatcaacaagaatgatctcttttttattgctgattgtttccctttactcgacgaactcatcctaaccg |
2490796 |
T |
|
| Q |
530 |
acactggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgctttaactagtaatatcgtcggtgg |
629 |
Q |
| |
|
||| ||| |||||| |||| || |||| | |||||||| ||| ||| ||||||||||||||||| |||||||||| || |||| || | ||| |
|
|
| T |
2490795 |
acaacggtaatccccaaaattatgtgctagacaatgatgatcaattattggtgcttcccaaactccgcaagattgctttatctcttaatttcattggtaa |
2490696 |
T |
|
| Q |
630 |
acactcaattaagaatctctgcaagagctgtgaccttcttcaagaggtcaaagtg |
684 |
Q |
| |
|
|||||| |||| |||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
2490695 |
tcactcagttaaagatctctgcaagaactgtgaccttcttcaagaggccaaagtg |
2490641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 153 - 618
Target Start/End: Complemental strand, 2519279 - 2518812
Alignment:
| Q |
153 |
gtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctacactccctttccttaatcgtctctttgaaaggttcc |
252 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||| || |||| |||||| | ||| ||||||||||| ||||||||||||| ||||||| |
|
|
| T |
2519279 |
gtttcaaaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctctttgataggttcc |
2519180 |
T |
|
| Q |
253 |
ctaatattacatcacttaatatcactctctctccttaagg--gggaccgagaagccgacctcggcgagcttctagtccaaatctctacttcctctttata |
350 |
Q |
| |
|
| || |||||||||| || |||||||||||| | ||| || |||||||| | ||||| ||||||||||| | |||| | |||| | ||||| | |
|
|
| T |
2519179 |
ccaacgttacatcactcaacatcactctctcttcccaagacaggctccgagaagacaacctcagcgagcttctaaccaaaatatgcactttccctttaga |
2519080 |
T |
|
| Q |
351 |
cctcaaatcactcactctctaccatcctgacagggcacataaaaatgagttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgttat |
450 |
Q |
| |
|
||||| ||| |||||||||||||||||| || | |||| | | ||| | ||||||||| | || |||||||||||||||| ||||||||||||| |
|
|
| T |
2519079 |
cctcatatcgctcactctctaccatcctatcacccttcctaaagaagggttgcaagctttgtctcaaaacatgaaaaatttgacatatctcacttgttat |
2518980 |
T |
|
| Q |
451 |
caaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcgaagaactcatccttaccgacactggttgtccccataatt |
550 |
Q |
| |
|
|||||| || |||| |||||||||||||| | ||||||||||||||||||||| ||| ||||||||||||||||||| || || | || || ||| |
|
|
| T |
2518979 |
taaatgaaatatatccacaagaatgatctcttcttcattgctgattgtttccctttactcaaagaactcatccttaccgataccatttataccaatgatt |
2518880 |
T |
|
| Q |
551 |
gtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgctttaactagtaat |
618 |
Q |
| |
|
| ||||||| |||| || |||| |||||||||| |||||||||| |||||||||| || ||||| |
|
|
| T |
2518879 |
tggtgatagatattgattttcaattcttggcgcttcctaaactccgcaagattgctttatcttgtaat |
2518812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 133 - 476
Target Start/End: Complemental strand, 2486373 - 2486021
Alignment:
| Q |
133 |
gtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctacactccctttccttaa |
232 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||| || || ||||||| ||||| ||||||| | ||| ||||||||||| | |
|
|
| T |
2486373 |
gttttaggtctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgattctcggtcacaatctccgagaaaacaatccctttccttca |
2486274 |
T |
|
| Q |
233 |
tcgtctctttgaaaggttccctaatattacatcacttaatatcactctctctccttaag--ggggaccgagaagccgacctcggcgagcttctagtccaa |
330 |
Q |
| |
|
|||||||||| | ||||||||||| ||||||| | ||||||||||||||| | ||| || || ||||| ||||||||||||||||| || |
|
|
| T |
2486273 |
tcgtctcttttatgggttccctaatgttacatcccacaatatcactctctcttcccaagacaggaacagagaaagtgacctcggcgagcttcttacacat |
2486174 |
T |
|
| Q |
331 |
atctctacttcctctttatacctcaaatcactcactctctaccatcctgacagggcacataaaaatgagttccgagctttgtccaagaagatgaaaaatt |
430 |
Q |
| |
|
||||| |||| | |||| ||||||||||||||||||||||| | || |||| | | ||||| | |||||||||||||| ||||||||||||| |
|
|
| T |
2486173 |
atctccactttccctttggacctcaaatcactcactctctacgagcccatcaggcttcctgcaaatgctctgcgagctttgtccaaaaagatgaaaaatt |
2486074 |
T |
|
| Q |
431 |
tgacatctc-------tcacttgttatcaaatgagatttatcaacaagaatga |
476 |
Q |
| |
|
||||||||| ||| ||||||| |||| |||||||||||||||||||| |
|
|
| T |
2486073 |
tgacatctctcaatagtcaattgttataaaattagatttatcaacaagaatga |
2486021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 2536647 - 2536575
Alignment:
| Q |
137 |
caggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctcc |
209 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
2536647 |
caggtctctctccctcatttcaaaacagtttctgtccatcaccaaccttcttcgattcttggtcaaaatctcc |
2536575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 283
Target Start/End: Complemental strand, 2467597 - 2467446
Alignment:
| Q |
132 |
agtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatctccaaagctacactccctttcctta |
231 |
Q |
| |
|
||||||| |||||||||| |||| |||||||||||| ||||||| ||||| | |||||||||| ||| || ||| | | ||| ||||||| ||| |
|
|
| T |
2467597 |
agtttcaagtctctctccgtcgtctcaaaacagtttttgtccattaccaacagtcttcgattctccgtctcgatttccgacggaacaatccctttacttc |
2467498 |
T |
|
| Q |
232 |
atcgtctctttgaaaggttccctaatattacatcacttaatatcactctctc |
283 |
Q |
| |
|
|||||||||||||||||||||| ||||| | |||| || | ||||||||||| |
|
|
| T |
2467497 |
atcgtctctttgaaaggttccccaatatcagatcaattgacatcactctctc |
2467446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 393 - 520
Target Start/End: Complemental strand, 2547348 - 2547221
Alignment:
| Q |
393 |
aaatgagttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgct |
492 |
Q |
| |
|
||||| ||| ||||||||||| | ||||||||||||||||| ||||||| ||||| |||| | ||||||| |||||||||| | | |||||||| |
|
|
| T |
2547348 |
aaatgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccaaaatcacctttatcagcaagaatgatttattcttcattgct |
2547249 |
T |
|
| Q |
493 |
gattgtttcccttccctcgaagaactca |
520 |
Q |
| |
|
||||||||||||| || |||||||||| |
|
|
| T |
2547248 |
gattgtttccctttacttgaagaactca |
2547221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 403 - 526
Target Start/End: Original strand, 2621417 - 2621540
Alignment:
| Q |
403 |
cgagctttgtccaagaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcc |
502 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||||||||||||||| | ||| | ||| |||||||||||| | || ||||||||||||||| |
|
|
| T |
2621417 |
cgagctttctccaaaaatatgaaaaatttgacatctctcacttgttaccgaattaataaaatccgcaagaatgatctattcttccttgctgattgtttcc |
2621516 |
T |
|
| Q |
503 |
cttccctcgaagaactcatcctta |
526 |
Q |
| |
|
||| ||||||||||||| ||||| |
|
|
| T |
2621517 |
ctttactcgaagaactcaacctta |
2621540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 390 - 448
Target Start/End: Original strand, 2381632 - 2381690
Alignment:
| Q |
390 |
taaaaatgagttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgtt |
448 |
Q |
| |
|
|||| ||| |||||||||||||||||| ||||||||||||||||| ||||| ||||||| |
|
|
| T |
2381632 |
taaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt |
2381690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 390 - 448
Target Start/End: Original strand, 2391260 - 2391318
Alignment:
| Q |
390 |
taaaaatgagttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgtt |
448 |
Q |
| |
|
|||| ||| |||||||||||||||||| ||||||||||||||||| ||||| ||||||| |
|
|
| T |
2391260 |
taaagatgggttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt |
2391318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 403 - 448
Target Start/End: Original strand, 2361217 - 2361262
Alignment:
| Q |
403 |
cgagctttgtccaagaagatgaaaaatttgacatctctcacttgtt |
448 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
2361217 |
cgagctttgtccaaaaaaatgaaaaatttgacatctctcacttgtt |
2361262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 403 - 527
Target Start/End: Complemental strand, 2467339 - 2467212
Alignment:
| Q |
403 |
cgagctttgtccaagaagatgaaaaatttgacatctctcacttgttatcaaatgagattt---atcaacaagaatgatctcaacatcattgctgattgtt |
499 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| ||||||||||| | ||| ||| ||| ||||||| ||||| | ||||||||||||||| |
|
|
| T |
2467339 |
cgagctttctccaaagagatgaaaaatttgacatcactcacttgttaccgaattgcttttgatatcgacaagaacgatcttttcttcattgctgattgtt |
2467240 |
T |
|
| Q |
500 |
tcccttccctcgaagaactcatccttac |
527 |
Q |
| |
|
|||||| |||||||| ||||||||||| |
|
|
| T |
2467239 |
tccctttactcgaagagctcatccttac |
2467212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 564 - 674
Target Start/End: Complemental strand, 2477201 - 2477091
Alignment:
| Q |
564 |
tgatgatcgattcctggcgcttcccaaactccgcaggattgctttaactagtaatatcgtcggtggacactcaattaagaatctctgcaagagctgtgac |
663 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||| |||||||||| || |||| || | ||| ||| || ||| | |||||||||||| ||| ||| |
|
|
| T |
2477201 |
tgatgatcaattgttggcgcttcccaaactccgcaagattgctttatctcctaatttcatgggtcgacgatctattgactatctctgcaagaactgcgac |
2477102 |
T |
|
| Q |
664 |
cttcttcaaga |
674 |
Q |
| |
|
||||||||||| |
|
|
| T |
2477101 |
cttcttcaaga |
2477091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 388 - 443
Target Start/End: Original strand, 2393832 - 2393888
Alignment:
| Q |
388 |
cataaaaatgagttccgagctttgtccaagaagatg-aaaaatttgacatctctcac |
443 |
Q |
| |
|
|||||||||| ||| |||||||||||| | |||||| |||||||||||||||||||| |
|
|
| T |
2393832 |
cataaaaatgggttgcgagctttgtcccaaaagatgaaaaaatttgacatctctcac |
2393888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 408 - 448
Target Start/End: Complemental strand, 12124634 - 12124594
Alignment:
| Q |
408 |
tttgtccaagaagatgaaaaatttgacatctctcacttgtt |
448 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
12124634 |
tttgtccaaaaagatgaaaaatttgacctctctcacttgtt |
12124594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 418 - 448
Target Start/End: Complemental strand, 2482559 - 2482529
Alignment:
| Q |
418 |
aagatgaaaaatttgacatctctcacttgtt |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
2482559 |
aagatgaaaaatttgacatctctcacttgtt |
2482529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 569 - 683
Target Start/End: Original strand, 5102506 - 5102620
Alignment:
| Q |
569 |
atcgattcctggcgcttcccaaactccgcaggattgctttaactagtaatatcgtcggtggacactcaattaagaatctctgcaagagctgtgaccttct |
668 |
Q |
| |
|
||||||| |||| |||||||||||||||| ||||| |||| || ||||| || | ||| || || ||||| |||| |||| || |||||||||||| |
|
|
| T |
5102506 |
atcgattgttggcacttcccaaactccgcaagattgttttatctcgtaatttcataggtacccaatctattaaccatctttgcaggaactgtgaccttct |
5102605 |
T |
|
| Q |
669 |
tcaagaggtcaaagt |
683 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
5102606 |
tcaagatgtcaaagt |
5102620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 5106306 - 5106380
Alignment:
| Q |
132 |
agtttcaggtctctctccctcgtttcaaaacagtttctgtccatcaccaatcgccttcgattcttggtcaaaatc |
206 |
Q |
| |
|
||||||| ||||||||| ||| |||||||||||| ||||||||||||| || | |||||||| ||||| |||| |
|
|
| T |
5106306 |
agtttcaagtctctctctgccgtctcaaaacagtttttgtccatcaccaaccgtcctcgattctcggtcacaatc |
5106380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 467 - 521
Target Start/End: Original strand, 5106632 - 5106686
Alignment:
| Q |
467 |
acaagaatgatctcaacatcattgctgattgtttcccttccctcgaagaactcat |
521 |
Q |
| |
|
|||||| ||||||| | ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5106632 |
acaagagtgatctcttcttcattgctgattgtttccctttactcgaagaactcat |
5106686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University