View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12518_low_22 (Length: 280)
Name: NF12518_low_22
Description: NF12518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12518_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 47619814 - 47619563
Alignment:
| Q |
20 |
atggcgtgggaaagaaggcgtcgacaaactcaacgtaggaggaatagcatgcacgattgcaacgacgaagatctaaatgagcttagaggatgtattgaat |
119 |
Q |
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| T |
47619814 |
atggcgtgggaaagaaggcgtcgacaaactcaacgtaggaggaatagcatgcacgattgcaacgacgaagatctaaatgagcttagaggatgtattgaat |
47619715 |
T |
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| Q |
120 |
taggatttggatttaatgaggaagatggacaaaagctttgcaatacattaccggctcttgatctatattttgccgttaaccggaacctgtctccaagtcc |
219 |
Q |
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| T |
47619714 |
taggatttggatttaatgaggaagatggacaaaagctttgcaatacattaccggctcttgatctatattttgccgttaaccggaacctgtctccaagtcc |
47619615 |
T |
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| Q |
220 |
ggtatctacacctacaactcatcgcactactcacagccgttcatcttcatct |
271 |
Q |
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| T |
47619614 |
ggtatctacacctacaactcatcgcactactcacagccgttcatcttcatct |
47619563 |
T |
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