View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12518_low_23 (Length: 274)

Name: NF12518_low_23
Description: NF12518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12518_low_23
NF12518_low_23
[»] chr2 (24 HSPs)
chr2 (24-263)||(2165798-2166036)
chr2 (137-263)||(2155842-2155968)
chr2 (141-221)||(22011353-22011433)
chr2 (76-162)||(27952316-27952402)
chr2 (78-162)||(27956154-27956238)
chr2 (137-263)||(31633979-31634105)
chr2 (78-162)||(2155972-2156056)
chr2 (78-162)||(22011441-22011525)
chr2 (78-162)||(31636342-31636426)
chr2 (137-256)||(31636219-31636338)
chr2 (137-262)||(27956242-27956368)
chr2 (78-162)||(31634109-31634193)
chr2 (105-263)||(15129293-15129452)
chr2 (137-262)||(27952406-27952532)
chr2 (109-162)||(21772380-21772433)
chr2 (99-162)||(33655633-33655696)
chr2 (137-263)||(33655501-33655629)
chr2 (105-162)||(36647298-36647355)
chr2 (137-216)||(44675310-44675389)
chr2 (105-162)||(8294583-8294641)
chr2 (124-162)||(33051623-33051661)
chr2 (138-247)||(18725683-18725791)
chr2 (105-162)||(28737911-28737968)
chr2 (99-162)||(5171605-5171669)
[»] scaffold0110 (3 HSPs)
scaffold0110 (78-263)||(46733-46919)
scaffold0110 (137-263)||(45350-45477)
scaffold0110 (78-163)||(45262-45347)
[»] chr6 (18 HSPs)
chr6 (140-262)||(29340897-29341020)
chr6 (137-263)||(3535910-3536035)
chr6 (137-263)||(3542121-3542246)
chr6 (137-263)||(30052077-30052204)
chr6 (78-162)||(3536039-3536123)
chr6 (137-263)||(30049790-30049917)
chr6 (78-162)||(3542250-3542334)
chr6 (78-162)||(30049921-30050005)
chr6 (176-250)||(19232213-19232286)
chr6 (97-162)||(30052208-30052273)
chr6 (82-162)||(29340810-29340890)
chr6 (141-249)||(3565627-3565733)
chr6 (105-162)||(33615530-33615588)
chr6 (137-244)||(11190394-11190498)
chr6 (137-254)||(2939781-2939896)
chr6 (75-130)||(29342061-29342116)
chr6 (174-250)||(2339173-2339249)
chr6 (107-150)||(1127271-1127315)
[»] chr4 (14 HSPs)
chr4 (137-263)||(22691186-22691312)
chr4 (137-249)||(22716548-22716659)
chr4 (137-244)||(13085180-13085286)
chr4 (137-249)||(22988558-22988669)
chr4 (137-263)||(6659418-6659544)
chr4 (189-256)||(24667569-24667637)
chr4 (99-162)||(6659351-6659414)
chr4 (174-247)||(4053039-4053111)
chr4 (141-244)||(13086227-13086329)
chr4 (76-162)||(19935492-19935577)
chr4 (79-162)||(7723665-7723746)
chr4 (137-223)||(9596857-9596942)
chr4 (110-162)||(21433594-21433647)
chr4 (186-222)||(34949126-34949162)
[»] chr3 (21 HSPs)
chr3 (137-263)||(3063825-3063951)
chr3 (137-263)||(3068963-3069089)
chr3 (137-263)||(43306760-43306886)
chr3 (139-263)||(53012901-53013025)
chr3 (137-263)||(43304048-43304172)
chr3 (173-254)||(41218688-41218769)
chr3 (78-162)||(5128914-5128998)
chr3 (77-162)||(43303959-43304044)
chr3 (78-162)||(43306672-43306756)
chr3 (174-247)||(25857682-25857756)
chr3 (173-249)||(39913352-39913429)
chr3 (78-162)||(3063737-3063821)
chr3 (137-249)||(19949892-19950003)
chr3 (137-249)||(4580454-4580563)
chr3 (137-228)||(5128820-5128910)
chr3 (97-263)||(45168338-45168507)
chr3 (78-143)||(3068875-3068940)
chr3 (137-249)||(20398488-20398602)
chr3 (137-206)||(40593531-40593598)
chr3 (99-153)||(52708858-52708913)
chr3 (174-244)||(19795148-19795217)
[»] chr1 (14 HSPs)
chr1 (137-263)||(13444076-13444202)
chr1 (137-263)||(13441687-13441813)
chr1 (137-263)||(50857532-50857659)
chr1 (78-162)||(13443988-13444072)
chr1 (77-162)||(50857443-50857528)
chr1 (77-162)||(8931225-8931310)
chr1 (137-223)||(12033639-12033724)
chr1 (99-145)||(13441627-13441673)
chr1 (137-207)||(40804591-40804660)
chr1 (137-216)||(8931143-8931221)
chr1 (124-153)||(10927206-10927235)
chr1 (137-206)||(12486314-12486381)
chr1 (127-155)||(8965803-8965831)
chr1 (105-150)||(43681478-43681525)
[»] chr8 (25 HSPs)
chr8 (78-219)||(18468598-18468737)
chr8 (137-248)||(23573473-23573584)
chr8 (137-263)||(22926736-22926861)
chr8 (137-234)||(23570488-23570585)
chr8 (137-263)||(6845212-6845337)
chr8 (137-263)||(22921938-22922065)
chr8 (78-162)||(22921850-22921934)
chr8 (91-163)||(23570588-23570660)
chr8 (171-247)||(26150581-26150657)
chr8 (137-244)||(18180771-18180877)
chr8 (78-162)||(6845341-6845425)
chr8 (78-162)||(22512046-22512130)
chr8 (78-162)||(22519346-22519430)
chr8 (78-162)||(22926648-22926732)
chr8 (78-162)||(42891664-42891748)
chr8 (137-262)||(42891752-42891878)
chr8 (76-162)||(37189871-37189957)
chr8 (105-162)||(42890397-42890454)
chr8 (107-162)||(2687747-2687803)
chr8 (137-263)||(22512134-22512262)
chr8 (91-150)||(22520812-22520871)
chr8 (105-163)||(2189748-2189806)
chr8 (137-219)||(22520887-22520968)
chr8 (137-228)||(37189778-37189867)
chr8 (99-162)||(16598254-16598318)
[»] chr7 (18 HSPs)
chr7 (137-227)||(859244-859334)
chr7 (137-227)||(1217248-1217338)
chr7 (78-162)||(13882686-13882770)
chr7 (78-162)||(13886159-13886243)
chr7 (135-263)||(13886274-13886401)
chr7 (137-263)||(13882774-13882899)
chr7 (77-162)||(859155-859240)
chr7 (77-162)||(1217159-1217244)
chr7 (178-249)||(5678340-5678411)
chr7 (178-249)||(5703392-5703463)
chr7 (137-263)||(1220528-1220647)
chr7 (137-247)||(31577271-31577380)
chr7 (84-162)||(1220446-1220524)
chr7 (108-151)||(4888715-4888758)
chr7 (100-162)||(27309636-27309699)
chr7 (141-247)||(4668258-4668363)
chr7 (91-151)||(1786699-1786760)
chr7 (91-144)||(29175780-29175833)
[»] chr5 (7 HSPs)
chr5 (77-162)||(40778785-40778870)
chr5 (79-162)||(21848966-21849049)
chr5 (137-249)||(19677219-19677330)
chr5 (137-263)||(40778874-40779001)
chr5 (123-162)||(19497349-19497388)
chr5 (105-155)||(22440870-22440920)
chr5 (105-153)||(492581-492630)
[»] scaffold0054 (2 HSPs)
scaffold0054 (106-162)||(37716-37772)
scaffold0054 (127-162)||(49327-49362)
[»] scaffold0240 (1 HSPs)
scaffold0240 (105-151)||(16063-16109)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 24 - 263
Target Start/End: Complemental strand, 2166036 - 2165798
Alignment:
Q  24 aagcaactttgatttttcctcctcatnnnnnnngtgacatgtttatgtccttattgacgcagtacaaaagcatagggttatcaagcgctaaacttagata 123  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||| | ||| |||||||| |||||| ||||| ||||||    
T  2166036 aagcaactttgatttttcctcctcataaaaaa-gtgacatgtttatgtccttattgacgcagtacgacagcgtagggttaacaagcgttaaacctagata 2165938  T
Q  124 aaaaagaacaagtttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaa 223  Q
     |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2165937 gaaaagaacaagtttgcaagcaacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaa 2165838  T
Q  224 tgtgtctcttatgctgcataagttctccttatacagtgaa 263  Q
    ||||||||||| ||||||||||||||||||||| ||||||    
T  2165837 tgtgtctcttaggctgcataagttctccttatatagtgaa 2165798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 137 - 263
Target Start/End: Complemental strand, 2155968 - 2155842
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatg 236  Q
    ||||||||||||||| |||||||||||  |||||| ||||||| || ||||||||||||||||| ||||||||||| ||||||||| ||||||||||| |    
T  2155968 ttgcaagcgacaaacctatcaaaataagggttttcggaatccatcagaattgagagaaaagtcttgaatattattattgaataaaagtgtgtctcttagg 2155869  T
Q  237 ctgcataagttctccttatacagtgaa 263  Q
    ||||||||||||| |||||| ||||||    
T  2155868 ctgcataagttctgcttatatagtgaa 2155842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 22011433 - 22011353
Alignment:
Q  141 aagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaa 221  Q
    ||||||||||| |||||||||||  |||| | |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22011433 aagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaagtctcgaatattattaatgaataaa 22011353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 162
Target Start/End: Original strand, 27952316 - 27952402
Alignment:
Q  76 attgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||||||||||  |||| |||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  27952316 attgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 27952402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 27956154 - 27956238
Alignment:
Q  78 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||||||||  |||| |||||||| |||||||||||| |||||| ||||||||||||||||||||||||||| ||| ||||||    
T  27956154 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacctatgaaaata 27956238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 263
Target Start/End: Complemental strand, 31634105 - 31633979
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccacca-aaattgagagaaaagtctcgaatattattaatgaataaaaatg-tgtctctta 234  Q
    ||||||||||||||| ||||||||| || | |||| |||||||||| |||||||||||||| |||| ||||||||||||||||||||| | || |||||     
T  31634105 ttgcaagcgacaaacctatcaaaat-aagggtttcggaatccaccagaaattgagagaaaa-tctcaaatattattaatgaataaaaaagttgcctcttc 31634008  T
Q  235 tgctgcataagttctccttatacagtgaa 263  Q
     |||||||||||||| |||||| ||||||    
T  31634007 ggctgcataagttctacttatatagtgaa 31633979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 2156056 - 2155972
Alignment:
Q  78 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||||||||  |||| |||||||| |||||||||||| |||||| |||||||||||||||| |||||||||||| | ||||||    
T  2156056 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcgagcgacaaacttgtgaaaata 2155972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 22011525 - 22011441
Alignment:
Q  78 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||||||||  |||| |||||||| |||||||||||| |||||| ||||||||||||||||||| ||||||||| | ||||||    
T  22011525 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagtgacaaacttgtgaaaata 22011441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 31636426 - 31636342
Alignment:
Q  78 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||||||||  |||| |||||||| |||||||||||| |||||| |||||||| |||||||||||||||||||| | ||||||    
T  31636426 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaactagtttgcaagcgacaaacttgtgaaaata 31636342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 256
Target Start/End: Complemental strand, 31636338 - 31636219
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccacca-aaattgagagaaaagtctcgaatattattaatgaataaaaatg-tgtctctta 234  Q
    ||||||||||||||| ||||||||| || | || | |||||||||| |||||||||||||| ||| |||||||||||||||||||||| | ||||||||     
T  31636338 ttgcaagcgacaaacctatcaaaat-aagggttccggaatccaccagaaattgagagaaaa-tcttgaatattattaatgaataaaaaagttgtctcttc 31636241  T
Q  235 tgctgcataagttctccttata 256  Q
     ||| |||||||||| ||||||    
T  31636240 ggctacataagttctacttata 31636219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 262
Target Start/End: Original strand, 27956242 - 27956368
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaat--aaaaatgtgtctctta 234  Q
    ||||||||||||||| ||| |||||||  |||| | |||||||||| ||||||||||||| ||||||||| | ||| |||||  |||| |||| ||||||    
T  27956242 ttgcaagcgacaaacctatgaaaataagggtttccggaatccaccagaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgcctctta 27956340  T
Q  235 tgctgcataagttctccttatacagtga 262  Q
     ||| |||||||||| |||||| |||||    
T  27956341 ggctacataagttctgcttatatagtga 27956368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 31634193 - 31634109
Alignment:
Q  78 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||||||||  |||| |||||||| ||| |||||||| |||||| |||||||||||||||| |||||||||||| | ||||||    
T  31634193 tgacgcagtacggaagcgtagggttagcaaacgctaaacctagatagaaaagaacaagtttgctagcgacaaacttgtgaaaata 31634109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 263
Target Start/End: Complemental strand, 15129452 - 15129293
Alignment:
Q  105 caagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctc--g 202  Q
    |||||||||||| |||||| ||||||||||||| ||||||||||||||| | |||||  | | || ||||||| |||| ||   |||||||||||||       
T  15129452 caagcgctaaacctagatagaaaagaacaagttcgcaagcgacaaacttgtgaaaat--agggttccagaatcaaccagaaaatagagaaaagtctctga 15129355  T
Q  203 aatattattaatg-aataaaaatgtgtctcttatgctgcataagttctccttatacagtgaa 263  Q
    ||||||||  ||| ||||||| |||| |||||| ||| |||||||||| |||||| ||||||    
T  15129354 aatattatagatgaaataaaagtgtgcctcttaggctacataagttctgcttatatagtgaa 15129293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 262
Target Start/End: Original strand, 27952406 - 27952532
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaat--aaaaatgtgtctctta 234  Q
    ||||||||||||||| | | |||||||  |||| | |||||||||| ||||||||||||| ||||||||| | ||| |||||  |||| |||| ||||||    
T  27952406 ttgcaagcgacaaacctttgaaaataagggtttccggaatccaccagaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgcctctta 27952504  T
Q  235 tgctgcataagttctccttatacagtga 262  Q
     ||| |||||||||| |||||| |||||    
T  27952505 ggctacataagttctgcttatatagtga 27952532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 21772433 - 21772380
Alignment:
Q  109 cgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    ||||||||||||||  |||| |||||||||||||||||||||||||| ||||||    
T  21772433 cgctaaacttagattgaaaaaaacaagtttgcaagcgacaaacttatgaaaata 21772380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 33655696 - 33655633
Alignment:
Q  99 ggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    ||||| |||||||||||| |||||| ||||  ||||||||||||||||||||||| | ||||||    
T  33655696 ggttagcaagcgctaaacctagatagaaaaatacaagtttgcaagcgacaaacttgtgaaaata 33655633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 263
Target Start/End: Complemental strand, 33655629 - 33655501
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccacca-aaattgagagaaaagtctcgaatattattaatgaat--aaaaatgtgtctctt 233  Q
    |||||| |||||||| |||||||||||  |||| | |||||||||| |||||||||||||| ||||||||| | ||| |||||  |||| |||| |||||    
T  33655629 ttgcaaacgacaaacctatcaaaataagggtttccggaatccaccagaaattgagagaaaa-tctcgaataattttattgaatgaaaaagtgtgcctctt 33655531  T
Q  234 atgctgcataagttctccttatacagtgaa 263  Q
    | |||  ||  |||||||||||| ||||||    
T  33655530 aggctaaattggttctccttatatagtgaa 33655501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 36647355 - 36647298
Alignment:
Q  105 caagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||||||||| | |||  ||||||||||||||||||||||||||||| | ||||||    
T  36647355 caagcgctaaacctcgattgaaaagaacaagtttgcaagcgacaaacttgtgaaaata 36647298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 44675310 - 44675389
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagag-aaaagtctcgaatattattaatga 216  Q
    |||||||||||| || ||||||| |||  |||||| |||||||||| ||||||||| |||||| ||||||| |||||||||    
T  44675310 ttgcaagcgacatacctatcaaa-taagggttttcggaatccaccagaattgagagaaaaagtttcgaatactattaatga 44675389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 8294641 - 8294583
Alignment:
Q  105 caagcgctaaacttagataaaa-aagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||| |||||||||||||| || ||||||| ||||||||||||||||||| | ||||||    
T  8294641 caagtgctaaacttagatagaagaagaacacgtttgcaagcgacaaacttgtaaaaata 8294583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 33051661 - 33051623
Alignment:
Q  124 aaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  33051661 aaaaagaacaagtttgcaagcgacaaacttttgaaaata 33051623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 247
Target Start/End: Original strand, 18725683 - 18725791
Alignment:
Q  138 tgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatgc 237  Q
    |||||||||||||| |||| ||||||| ||||   || ||||| |||||| |||||||||| || |||| | ||| ||||| |||| ||||||||||  |    
T  18725683 tgcaagcgacaaacctatc-aaataaaggtttctggattccactaaaattaagagaaaagtttcaaataattttattgaatgaaaaagtgtctcttagac 18725781  T
Q  238 tgcataagtt 247  Q
     |||||||||    
T  18725782 cgcataagtt 18725791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 28737968 - 28737911
Alignment:
Q  105 caagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||| ||||||| |||||  |||||| |||||||||||||||||||||| | ||||||    
T  28737968 caagtgctaaacctagattgaaaagagcaagtttgcaagcgacaaacttttgaaaata 28737911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 5171605 - 5171669
Alignment:
Q  99 ggttatcaagcgctaaacttagataaaaaaga-acaagtttgcaagcgacaaacttatcaaaata 162  Q
    ||||| |||||||||||  |||||  |||||| ||||||||||||||||||||||| | ||||||    
T  5171605 ggttaacaagcgctaaatctagattgaaaagagacaagtttgcaagcgacaaacttgtaaaaata 5171669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 78 - 263
Target Start/End: Original strand, 46733 - 46919
Alignment:
Q  78 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaataaatgttttcagaatc 177  Q
    |||||||||||  |||| |||||| | |||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||| || | || | |||||    
T  46733 tgacgcagtacggaagcgtagggtgagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacctatcaaaattaa-ggttccggaatc 46831  T
Q  178 cacc-aaaattgagagaaaagtctcgaatattattaatgaataaaaa--tgtgtctcttatgctgcataagttctccttatacagtgaa 263  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||  ||||||||||| |||| ||||||| | |||||| ||||||    
T  46832 caccaaaaattgagagaaaa-tctcgaatattattaatgaataaaaaagtgtgtctcttaagctggataagttttgcttatatagtgaa 46919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 137 - 263
Target Start/End: Original strand, 45350 - 45477
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccacca-aaattgagagaaaagtctcgaatattattaatgaataaaaatg--tgtctctt 233  Q
    ||||||||||||||| |||||||||||  |||  |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||  || |||||    
T  45350 ttgcaagcgacaaacctatcaaaataagggttc-cagaatccaccagaaattgagagaaaa-tctcgaatattattaatgaataaaaatgtttgcctctt 45447  T
Q  234 atgctgcataagttctccttatacagtgaa 263  Q
    | ||||||||||||||||||||| ||||||    
T  45448 aggctgcataagttctccttatatagtgaa 45477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 163
Target Start/End: Original strand, 45262 - 45347
Alignment:
Q  78 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaataa 163  Q
    |||| ||||||  |||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||    
T  45262 tgacacagtacggaagcgtagggttagcaagcgctaaaattagataagaaagaacaagtttgcaagcgacaaacttatgaaaataa 45347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 8e-33; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 140 - 262
Target Start/End: Original strand, 29340897 - 29341020
Alignment:
Q  140 caagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaa-tgtgtctcttatgct 238  Q
    |||||||||||| |||||||||||| |||| | |||||||| | |||||||||||||||||||||||||||||||||||||||| ||| | ||||| |||    
T  29340897 caagcgacaaacctatcaaaataaaggtttccggaatccactagaattgagagaaaagtctcgaatattattaatgaataaaaagtgtttgtcttaggct 29340996  T
Q  239 gcataagttctccttatacagtga 262  Q
    ||||||||||| |||||| |||||    
T  29340997 gcataagttctgcttatatagtga 29341020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 137 - 263
Target Start/End: Complemental strand, 3536035 - 3535910
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccacca-aaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttat 235  Q
    ||||||||||||||| |||||||||||  |||  | |||||||||| |||||||||||||| ||||||||||||||||||||||||| |||| ||||||     
T  3536035 ttgcaagcgacaaacctatcaaaataagggttc-cggaatccaccagaaattgagagaaaa-tctcgaatattattaatgaataaaagtgtgcctcttag 3535938  T
Q  236 gctgcataagttctccttatacagtgaa 263  Q
    |||||||||||||| |||||| ||||||    
T  3535937 gctgcataagttctgcttatatagtgaa 3535910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 137 - 263
Target Start/End: Complemental strand, 3542246 - 3542121
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccacca-aaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttat 235  Q
    ||||||||||||||| |||||||||||  |||  | |||||||||| |||||||||||||| ||||||||||||||||||||||||| |||| ||||||     
T  3542246 ttgcaagcgacaaacctatcaaaataagggttc-cggaatccaccagaaattgagagaaaa-tctcgaatattattaatgaataaaagtgtgcctcttag 3542149  T
Q  236 gctgcataagttctccttatacagtgaa 263  Q
    |||||||||||||| |||||| ||||||    
T  3542148 gctgcataagttctgcttatatagtgaa 3542121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 263
Target Start/End: Complemental strand, 30052204 - 30052077
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaa-ttgagagaaaagtctcgaatattattaatgaataaaaa--tgtgtctctt 233  Q
    ||||||||||||||| ||||||||| |  |||  | ||||||||||||| ||||||||||| ||||||||||||||||||||||||||  ||||||||||    
T  30052204 ttgcaagcgacaaacctatcaaaattagggttc-cggaatccaccaaaaattgagagaaaa-tctcgaatattattaatgaataaaaaagtgtgtctctt 30052107  T
Q  234 atgctgcataagttctccttatacagtgaa 263  Q
    | |||||||||||| | |||||| ||||||    
T  30052106 aagctgcataagttttgcttatatagtgaa 30052077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 3536123 - 3536039
Alignment:
Q  78 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||||||||  |||| |||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  3536123 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 3536039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 137 - 263
Target Start/End: Complemental strand, 30049917 - 30049790
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaa-ttgagagaaaagtctcgaatattattaatgaataaaaa--tgtgtctctt 233  Q
    ||||||||||||||| ||||||||| |  |||  | ||||||||||||| ||||||||||| ||||||||||||||||||||||||||  ||||||||||    
T  30049917 ttgcaagcgacaaacctatcaaaattagggttc-cggaatccaccaaaaattgagagaaaa-tctcgaatattattaatgaataaaaaagtgtgtctctt 30049820  T
Q  234 atgctgcataagttctccttatacagtgaa 263  Q
    | |||| ||||||| | |||||| ||||||    
T  30049819 aagctgaataagttttgcttatatagtgaa 30049790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 3542334 - 3542250
Alignment:
Q  78 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||||||||  |||| |||||||| |||||||||||| |||||| ||||||||||||||| ||||||||||||| | ||||||    
T  3542334 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgtaagcgacaaacttgtgaaaata 3542250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 30050005 - 30049921
Alignment:
Q  78 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||||||||  ||||  ||||||| |||||||||||| || ||| ||||||||||||||||||||||||||||| | ||||||    
T  30050005 tgacgcagtacggaagcgaagggttagcaagcgctaaacctatatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 30049921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 250
Target Start/End: Complemental strand, 19232286 - 19232213
Alignment:
Q  176 tccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatgctgcataagttctc 250  Q
    |||||||||||||||| |||||||||||||||| ||| ||||| ||| |||||||| || |||||||||||||||    
T  19232286 tccaccaaaattgagataaaagtctcgaatattgttattgaat-aaagtgtgtctcgtaggctgcataagttctc 19232213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 30052273 - 30052208
Alignment:
Q  97 agggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||||  ||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  30052273 agggttagaaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 30052208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 29340810 - 29340890
Alignment:
Q  82 gcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||||  |||| |||||||| || ||||||||| |||||| |||| |||||||||||||||||||||||| | ||||||    
T  29340810 gcagtacggaagcgtagggttagcaggcgctaaacctagatagaaaaaaacaagtttgcaagcgacaaacttgtgaaaata 29340890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 249
Target Start/End: Complemental strand, 3565733 - 3565627
Alignment:
Q  141 aagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatgctgc 240  Q
    |||||| |||| ||||||| |||  |||| || ||||||||| ||||||||||||||||||||||||| ||| ||||| |||| ||| |||||  ||| |    
T  3565733 aagcgataaacctatcaaa-taagagtttccaaaatccaccagaattgagagaaaagtctcgaatatttttattgaatgaaaa-gtgcctctttggctac 3565636  T
Q  241 ataagttct 249  Q
    |||||||||    
T  3565635 ataagttct 3565627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 33615530 - 33615588
Alignment:
Q  105 caagcgctaaacttagata-aaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    ||||||| |||| |||||| |||||||||||||||||||||||||||||| | ||||||    
T  33615530 caagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaata 33615588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 244
Target Start/End: Complemental strand, 11190498 - 11190394
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatg 236  Q
    ||||||||||||||| |||||||   || |||| | |||||||||| ||||||||||||| ||||||||| | ||| ||||| |||| |||||| ||| |    
T  11190498 ttgcaagcgacaaacctatcaaat--aaggtttccggaatccaccagaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtcttttaag 11190402  T
Q  237 ctgcataa 244  Q
    || |||||    
T  11190401 ctacataa 11190394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 254
Target Start/End: Original strand, 2939781 - 2939896
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgt-ctcttat 235  Q
    ||||||||||||||| |||||||   || ||||||  ||||||||| ||||||||||||  | | ||||||| ||| ||||| |||| |||| ||||||     
T  2939781 ttgcaagcgacaaacctatcaaa--taaggttttcgaaatccaccataattgagagaaattttttgaatatt-ttattgaatgaaaaagtgtcctcttag 2939877  T
Q  236 gctgcataagttctcctta 254  Q
    |||||||||||||| ||||    
T  2939878 gctgcataagttctgctta 2939896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 29342116 - 29342061
Alignment:
Q  75 tattgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaaga 130  Q
    ||||||||||||||  |||| |||||||| |||||||||||| |||||| ||||||    
T  29342116 tattgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaaga 29342061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 2339173 - 2339249
Alignment:
Q  174 aatccaccaaaattgagagaaaagtctcgaatattattaatgaat-aaaaatgtgtctcttatgctgcataagttctc 250  Q
    ||||||||| ||||||||||||||||||| ||| | ||| ||||| |||||  || |||||| |||||||||||||||    
T  2339173 aatccaccagaattgagagaaaagtctcg-ataattttattgaatgaaaaagatgcctcttaggctgcataagttctc 2339249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 1127315 - 1127271
Alignment:
Q  107 agcgctaaacttagataaaaaagaa-caagtttgcaagcgacaaa 150  Q
    |||||||||| ||||| |||||||| |||||||||||||||||||    
T  1127315 agcgctaaacctagattaaaaagaaacaagtttgcaagcgacaaa 1127271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 137 - 263
Target Start/End: Complemental strand, 22691312 - 22691186
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatg 236  Q
    ||||||||||||||| |||| ||||||  |||| | |||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||||| |    
T  22691312 ttgcaagcgacaaacctatcgaaataagggtttccggaatccaccagaattgagagaaaagtcttgaatattattaatgaataaaagtgtgcctcttagg 22691213  T
Q  237 ctgcataagttctccttatacagtgaa 263  Q
    || |||||||||| |||||| ||||||    
T  22691212 ctacataagttctgcttatatagtgaa 22691186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 137 - 249
Target Start/End: Complemental strand, 22716659 - 22716548
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatg 236  Q
    ||||||||||||||| |||||||| ||  |||| | |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||| |    
T  22716659 ttgcaagcgacaaacctatcaaaaaaagggtttccggaatccaccagaattgagagaaaagtctcgaatattattaatgaataaaagtgtgcctctta-g 22716561  T
Q  237 ctgcataagttct 249  Q
    || ||||||||||    
T  22716560 ctacataagttct 22716548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 137 - 244
Target Start/End: Original strand, 13085180 - 13085286
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatg 236  Q
    ||||||||||||||| |||||||||||  |||||| |||||||||||||||||||||||| ||||||||| | ||| |||||||||| |||||||||| |    
T  13085180 ttgcaagcgacaaacctatcaaaataagggttttcggaatccaccaaaattgagagaaaa-tctcgaataattttattgaataaaaaagtgtctcttagg 13085278  T
Q  237 ctgcataa 244  Q
    ||||||||    
T  13085279 ctgcataa 13085286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 137 - 249
Target Start/End: Original strand, 22988558 - 22988669
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatg 236  Q
    ||||||||||||||| |||| ||| ||  |||| | |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||| |    
T  22988558 ttgcaagcgacaaacctatcgaaaaaagggtttccggaatccaccagaattgagagaaaagtctcgaatattattaatgaataaaagtgtgcctctta-g 22988656  T
Q  237 ctgcataagttct 249  Q
    || ||||||||||    
T  22988657 ctacataagttct 22988669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 263
Target Start/End: Original strand, 6659418 - 6659544
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaat-aaaaatgtgtctcttat 235  Q
    ||||||||||||||| |||||||||||  |||| | |||||||||| ||||||||||||| ||||||||| | ||| ||||| |||||  || ||||||     
T  6659418 ttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa-tctcgaatagttttagtgaatcaaaaagttgcctcttag 6659516  T
Q  236 gctgcataagttctccttatacagtgaa 263  Q
    ||| |||||||||| |||||| ||||||    
T  6659517 gctacataagttctgcttatatagtgaa 6659544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 24667637 - 24667569
Alignment:
Q  189 agagaaaagtctcgaatattattaatg-aataaaaatgtgtctcttatgctgcataagttctccttata 256  Q
    ||||||||||||||||||||||||||| ||||||| |||| |||||| ||| |||||||||| ||||||    
T  24667637 agagaaaagtctcgaatattattaatgaaataaaagtgtgcctcttaggctacataagttctgcttata 24667569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 162
Target Start/End: Original strand, 6659351 - 6659414
Alignment:
Q  99 ggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    ||||| |||||||||||  |||||| ||||||||||||||||||||||||||||| | ||||||    
T  6659351 ggttagcaagcgctaaatctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 6659414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 4053111 - 4053039
Alignment:
Q  174 aatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatgctgcataagtt 247  Q
    ||||||||| ||||||||||||||||||||||||| ||| ||||| |||| | |||||||| | ||||||||||    
T  4053111 aatccaccataattgagagaaaagtctcgaatatttttattgaatgaaaa-gagtctcttaggttgcataagtt 4053039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 244
Target Start/End: Original strand, 13086227 - 13086329
Alignment:
Q  141 aagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatgctgc 240  Q
    ||||||||||| |||||||||||  ||||||||||||||  | ||||||||||||| ||||||||| | ||| ||||| |||| ||| | |||| || ||    
T  13086227 aagcgacaaacctatcaaaataagagttttcagaatccattagaattgagagaaaa-tctcgaataattttattgaattaaaaagtgccccttaggccgc 13086325  T
Q  241 ataa 244  Q
    ||||    
T  13086326 ataa 13086329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 162
Target Start/End: Complemental strand, 19935577 - 19935492
Alignment:
Q  76 attgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||||||||||| |||| |||| | | | ||||||||||| ||||| |||| || || |||||||||||||||||||| ||||||    
T  19935577 attgacgcagtacagaagcgtaggct-agccagcgctaaactcagatagaaaaaaataaatttgcaagcgacaaacttatgaaaata 19935492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 7723665 - 7723746
Alignment:
Q  79 gacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    ||||||||||| |||| |||| | | ||||||||||||| ||||  |||||||||||||||||||| |||||||| | ||||||    
T  7723665 gacgcagtacagaagcgtaggct-agcaagcgctaaact-agattgaaaagaacaagtttgcaagctacaaacttgtgaaaata 7723746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 9596942 - 9596857
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaa 223  Q
    |||||| ||| |||| ||||||| |||  |||| || ||||||||| |||||||||||||||||| |||||| ||| ||||| ||||    
T  9596942 ttgcaaacgataaacctatcaaa-taagggtttccataatccaccagaattgagagaaaagtctcaaatattcttattgaatgaaaa 9596857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 21433594 - 21433647
Alignment:
Q  110 gctaaacttagata-aaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    ||||||| |||||| ||||||||||| || ||||||||||||||||| ||||||    
T  21433594 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaata 21433647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 34949126 - 34949162
Alignment:
Q  186 ttgagagaaaagtctcgaatattattaatgaataaaa 222  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  34949126 ttgagagaaaagtctcgaatatttttattgaataaaa 34949162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 137 - 263
Target Start/End: Original strand, 3063825 - 3063951
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatg 236  Q
    ||||||||||||||| |||||||||||  |||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| |||  |||||| |    
T  3063825 ttgcaagcgacaaacctatcaaaataagggttttcggaatcaaccagaattgagagaaaagtctcgaatattattaatgaataaaagtgtacctcttagg 3063924  T
Q  237 ctgcataagttctccttatacagtgaa 263  Q
    || |||||||| | |||||| ||||||    
T  3063925 ctacataagttatgcttatatagtgaa 3063951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 137 - 263
Target Start/End: Original strand, 3068963 - 3069089
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatg 236  Q
    ||||||||||||||| |||||||||||  |||| | |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||  ||||| |    
T  3068963 ttgcaagcgacaaacctatcaaaataagggtttccggaatccaccaaaattgagagaaaagtatcgaatattattaatgaataaaagtgtgcatcttagg 3069062  T
Q  237 ctgcataagttctccttatacagtgaa 263  Q
    || |||||||| | |||||| ||||||    
T  3069063 ctacataagttatgcttatatagtgaa 3069089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 137 - 263
Target Start/End: Original strand, 43306760 - 43306886
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatg 236  Q
    ||||||||||||||| |||||||||||  |||| |  ||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||||| |    
T  43306760 ttgcaagcgacaaacctatcaaaataagggtttccgtaatccaccagaattgagagaaaagtcttgaatattattaatgaataaaagtgtgcctcttagg 43306859  T
Q  237 ctgcataagttctccttatacagtgaa 263  Q
    || |||||||||| |||||| ||||||    
T  43306860 ctacataagttctgcttatatagtgaa 43306886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 139 - 263
Target Start/End: Complemental strand, 53013025 - 53012901
Alignment:
Q  139 gcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatgct 238  Q
    ||||||||||||| |||||||||||  |||| | |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||| |||    
T  53013025 gcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaagtctcgaatattattaatgaataaaagtgtgcctcttaggct 53012926  T
Q  239 gcataagttctccttatacagtgaa 263  Q
     ||| |||| | |||||| ||||||    
T  53012925 acattagttatgcttatatagtgaa 53012901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 137 - 263
Target Start/End: Original strand, 43304048 - 43304172
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatg 236  Q
    ||||||||||||||| ||| |||||||  |||| |  ||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||| |    
T  43304048 ttgcaagcgacaaacctattaaaataagggtttccgaaatccaccagaattgagagaaaagtctcgaatattattaatgaataaaa--gtgtctcttagg 43304145  T
Q  237 ctgcataagttctccttatacagtgaa 263  Q
    || |||||||||| |||||| ||||||    
T  43304146 ctacataagttctgcttatatagtgaa 43304172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 254
Target Start/End: Complemental strand, 41218769 - 41218688
Alignment:
Q  173 gaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatgctgcataagttctcctta 254  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| |||||||||| ||||    
T  41218769 gaatccaccagaattgagagaaaagtctcgaatattattattgaataaaagtgtgtctcttaggctccataagttctgctta 41218688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 5128998 - 5128914
Alignment:
Q  78 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||||||||| |||| |||||||| || ||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  5128998 tgacgcagtacagaagcgtagggttagcaggcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 5128914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 43303959 - 43304044
Alignment:
Q  77 ttgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    ||||||||||||  |||| || ||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  43303959 ttgacgcagtacggaagcgtaaggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 43304044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 43306672 - 43306756
Alignment:
Q  78 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||||||||  |||| |||||||| |||||||||||| |||||| |||||||||||||||||||| |||||||| | ||||||    
T  43306672 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcaacaaacttgtgaaaata 43306756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 25857756 - 25857682
Alignment:
Q  174 aatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaa-tgtgtctcttatgctgcataagtt 247  Q
    ||||||||| |||||||||||||||||| |||||||||| |||||||||| ||||||||||| ||| ||||||||    
T  25857756 aatccaccacaattgagagaaaagtctcaaatattattattgaataaaaagtgtgtctcttaggctacataagtt 25857682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 39913352 - 39913429
Alignment:
Q  173 gaatccaccaaaattgagagaaaagtctcgaatattattaatgaat-aaaaatgtgtctcttatgctgcataagttct 249  Q
    |||||||||| ||||| ||||||||||||||||||| ||| ||||| ||||||||| |||||| ||||||||||||||    
T  39913352 gaatccaccagaattgggagaaaagtctcgaatatttttattgaatcaaaaatgtgcctcttaggctgcataagttct 39913429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 3063737 - 3063821
Alignment:
Q  78 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    ||||||||||| ||||| |||||||| |||||| ||||| |||||| |||||||  |||||||||||||||||||| | ||||||    
T  3063737 tgacgcagtacgaaagcgtagggttagcaagcgttaaacctagatagaaaagaaagagtttgcaagcgacaaacttgtgaaaata 3063821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 249
Target Start/End: Complemental strand, 19950003 - 19949892
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatg 236  Q
    ||||||||||||||||||||||| |||  |||||  ||||||| || |||||||||||||||||| |||||| ||| | ||| | || ||| |||||| |    
T  19950003 ttgcaagcgacaaacttatcaaa-taagggtttttggaatccatcagaattgagagaaaagtctctaatatttttattcaatgataaagtgactcttagg 19949905  T
Q  237 ctgcataagttct 249  Q
    |||||||||||||    
T  19949904 ctgcataagttct 19949892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 249
Target Start/End: Complemental strand, 4580563 - 4580454
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatg 236  Q
    ||||||||||||||| ||||||| |||  ||||||||||||||| | ||||||||||||| ||||||||||| ||| ||||| |||| |||  ||||| |    
T  4580563 ttgcaagcgacaaacctatcaaa-taagggttttcagaatccactagaattgagagaaaattctcgaatatt-ttattgaatgaaaa-gtgcatcttacg 4580467  T
Q  237 ctgcataagttct 249  Q
    ||||| |||||||    
T  4580466 ctgcaaaagttct 4580454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 228
Target Start/End: Complemental strand, 5128910 - 5128820
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgt 228  Q
    ||||||||||||||| |||||||||||  |||| | |||||||||| ||||||||||||| ||||||||| | ||| ||||| |||| ||||    
T  5128910 ttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgt 5128820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 263
Target Start/End: Original strand, 45168338 - 45168507
Alignment:
Q  97 agggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttat-caaaataaatgttttcagaatccacca-aaattgagagaa 194  Q
    ||||||| |||| ||||||| |||||  |||  |||||||||||||||||||||||| |  |||||| | | || |||||||||| | ||||||||||||    
T  45168338 agggttagcaagtgctaaacctagattgaaataaacaagtttgcaagcgacaaacttgtgaaaaatatagggttccagaatccacaagaaattgagagaa 45168437  T
Q  195 aagtctcgaatattattaatgaat--aaaaatgtgtctcttatgctgcataagttctccttatacagtgaa 263  Q
    || ||||||||| | ||| |||||  |||||| || ||||||  |||||||| |||| |||||| ||||||    
T  45168438 aa-tctcgaataattttattgaataaaaaaatatgcctcttagtctgcataacttctgcttatatagtgaa 45168507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 3068875 - 3068940
Alignment:
Q  78 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaag 143  Q
    |||||||||||  |||| || ||||| |||||||||||| |||||| |||||||||||||||||||    
T  3068875 tgacgcagtacggaagcgtatggttagcaagcgctaaacctagatagaaaagaacaagtttgcaag 3068940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 249
Target Start/End: Original strand, 20398488 - 20398602
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctctta-- 234  Q
    |||||||||||||   ||||||| |||  |||||| |||||||||| |||||||| |||||||||||||||| ||  | ||||||||  |||||||||      
T  20398488 ttgcaagcgacaagtctatcaaa-taagggttttcggaatccaccagaattgagaaaaaagtctcgaatatttttcttaaataaaaaactgtctcttagg 20398586  T
Q  235 -tgctgcataagttct 249  Q
     |||||||||||||||    
T  20398587 ctgctgcataagttct 20398602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 40593531 - 40593598
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaata 206  Q
    ||||||||||||||| ||||||| |||  |||||| |||||||||||||||||||||||| |||||||||    
T  40593531 ttgcaagcgacaaacctatcaaa-taagggttttcggaatccaccaaaattgagagaaaa-tctcgaata 40593598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 153
Target Start/End: Complemental strand, 52708913 - 52708858
Alignment:
Q  99 ggttatcaagcgctaaacttagata-aaaaagaacaagtttgcaagcgacaaactt 153  Q
    ||||| |||||||||||| |||||| ||||||||||| ||||||||||| ||||||    
T  52708913 ggttaacaagcgctaaacctagatagaaaaagaacaaatttgcaagcgataaactt 52708858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 19795217 - 19795148
Alignment:
Q  174 aatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatgctgcataa 244  Q
    |||||||||||||| |||||||| ||| ||||| | ||| ||||||||||  ||||||||| |||||||||    
T  19795217 aatccaccaaaatttagagaaaa-tctggaataattttattgaataaaaaattgtctcttaggctgcataa 19795148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 137 - 263
Target Start/End: Original strand, 13444076 - 13444202
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatg 236  Q
    ||||||||||||||| |||||||||||  |||| |  ||||||||| |||||||||||||||||| |||||||||| |||||||||||||| |||||| |    
T  13444076 ttgcaagcgacaaacatatcaaaataagggtttccgtaatccaccagaattgagagaaaagtctctaatattattactgaataaaaatgtgcctcttagg 13444175  T
Q  237 ctgcataagttctccttatacagtgaa 263  Q
    || |||||||||| |||||| ||||||    
T  13444176 ctacataagttctgcttatatagtgaa 13444202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 137 - 263
Target Start/End: Original strand, 13441687 - 13441813
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatg 236  Q
    |||||||||| |||| ||| |||||||   ||| | ||||||| || |||||||||||||||||| |||||||||||||||||||| |||| |||||| |    
T  13441687 ttgcaagcgaaaaacctattaaaataaggatttccggaatccatcagaattgagagaaaagtctctaatattattaatgaataaaagtgtgcctcttagg 13441786  T
Q  237 ctgcataagttctccttatacagtgaa 263  Q
    ||  ||||||||  |||||| ||||||    
T  13441787 ctatataagttcagcttatatagtgaa 13441813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 137 - 263
Target Start/End: Original strand, 50857532 - 50857659
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaat--aaaaatgtgtctctta 234  Q
    ||||||||||||||| |||||||||||  |||| | |||||||||| ||||||||||||| ||||||||| | ||| || ||  |||| |||| ||||||    
T  50857532 ttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa-tctcgaataattttattgtatcaaaaagtgtgcctctta 50857630  T
Q  235 tgctgcataagttctccttatacagtgaa 263  Q
     |||||||||||||| |||||| ||||||    
T  50857631 ggctgcataagttctgcttatatagtgaa 50857659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 13443988 - 13444072
Alignment:
Q  78 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    ||||||||| |  ||||||||||||| ||||| |||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  13443988 tgacgcagttcggaagcatagggttaacaagcactaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 13444072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 50857443 - 50857528
Alignment:
Q  77 ttgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    ||||||||||||  |||| |||||||| |||||||||||| |||||| ||||||| ||||||| ||||||||||||| | ||||||    
T  50857443 ttgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaataagtttgtaagcgacaaacttgtgaaaata 50857528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 162
Target Start/End: Complemental strand, 8931310 - 8931225
Alignment:
Q  77 ttgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    ||||||||||||  |||| |||||||| |||||||||||| |||||  |||| ||||||||||||||||| |||||| | ||||||    
T  8931310 ttgacgcagtacggaagcgtagggttagcaagcgctaaacctagattgaaaaaaacaagtttgcaagcgataaacttgtgaaaata 8931225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 12033639 - 12033724
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaa 223  Q
    ||||||||||||||||||||||| | |  |||| || ||||||  | ||||||||||||||||||||||||| ||| | ||||||||    
T  12033639 ttgcaagcgacaaacttatcaaa-tgagggtttacataatccattagaattgagagaaaagtctcgaatatttttattaaataaaaa 12033724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 13441627 - 13441673
Alignment:
Q  99 ggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcg 145  Q
    ||||| ||||||||||||||||||| |||||||||| ||||||||||    
T  13441627 ggttagcaagcgctaaacttagatagaaaagaacaattttgcaagcg 13441673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 40804660 - 40804591
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatat 207  Q
    ||||||||||||||| ||||||| ||   |||| || ||||||||| ||||||||||||||||||||||||    
T  40804660 ttgcaagcgacaaacctatcaaa-tacgggtttccaaaatccaccagaattgagagaaaagtctcgaatat 40804591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 8931221 - 8931143
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccacca-aaattgagagaaaagtctcgaatattattaatga 216  Q
    ||||||||||||||| |||||| ||||  |||  | |||||||||| |||||||||||||| |||||||||||||||||||    
T  8931221 ttgcaagcgacaaacctatcaatataagggttc-cggaatccaccagaaattgagagaaaa-tctcgaatattattaatga 8931143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 153
Target Start/End: Complemental strand, 10927235 - 10927206
Alignment:
Q  124 aaaaagaacaagtttgcaagcgacaaactt 153  Q
    ||||||||||||||||||||||||||||||    
T  10927235 aaaaagaacaagtttgcaagcgacaaactt 10927206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 12486314 - 12486381
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaata 206  Q
    |||||||| |||||| ||| ||| |||  |||||| |||||||||||||||||||||||| |||||||||    
T  12486314 ttgcaagcaacaaacctattaaa-taagggttttcggaatccaccaaaattgagagaaaa-tctcgaata 12486381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 155
Target Start/End: Original strand, 8965803 - 8965831
Alignment:
Q  127 aagaacaagtttgcaagcgacaaacttat 155  Q
    |||||||||||||||||||||||||||||    
T  8965803 aagaacaagtttgcaagcgacaaacttat 8965831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 43681525 - 43681478
Alignment:
Q  105 caagcgctaaacttagat--aaaaaagaacaagtttgcaagcgacaaa 150  Q
    |||||||||||| |||||  |||||| |||||||||||||||||||||    
T  43681525 caagcgctaaacctagattgaaaaaaaaacaagtttgcaagcgacaaa 43681478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 78 - 219
Target Start/End: Complemental strand, 18468737 - 18468598
Alignment:
Q  78 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaataaatgttttcagaatc 177  Q
    |||||||||||| ||||| ||||||| |||||||||||| ||| || ||||||||||| ||||||||||||||||| | |||||  | | || | |||||    
T  18468737 tgacgcagtacagaagca-agggttagcaagcgctaaacctaggtagaaaagaacaagcttgcaagcgacaaacttgtgaaaat--agggttccggaatc 18468641  T
Q  178 cacca-aaattgagagaaaagtctcgaatattattaatgaata 219  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  18468640 caccagaaattgagagaaaagtctcgaatattattaatgaata 18468598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 137 - 248
Target Start/End: Complemental strand, 23573584 - 23573473
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatg 236  Q
    ||||||||||||||| |||||||||||  |||| |  |||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||| |    
T  23573584 ttgcaagcgacaaacctatcaaaataagggtttccgaaatccacctaaattgagagaaaagtctcgaatattattaatgaataaaagtgtgcctcttagg 23573485  T
Q  237 ctgcataagttc 248  Q
    || |||||||||    
T  23573484 ctacataagttc 23573473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 263
Target Start/End: Original strand, 22926736 - 22926861
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatg 236  Q
    ||||||||||||||| |||||||||||  ||||   |||||||||| ||||||||||||| ||||||||||| ||| ||||| ||| ||||||||||| |    
T  22926736 ttgcaagcgacaaacctatcaaaataagggtttctggaatccaccagaattgagagaaaa-tctcgaatatttttattgaattaaattgtgtctcttagg 22926834  T
Q  237 ctgcataagttctccttatacagtgaa 263  Q
    ||||||||||||| |||||| ||||||    
T  22926835 ctgcataagttctgcttatatagtgaa 22926861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 137 - 234
Target Start/End: Complemental strand, 23570585 - 23570488
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctctta 234  Q
    ||||||||||||||| |||||||||||  |||| |||||| ||||| |||||||||||||||||||||||||||| |||||||||| |||| ||||||    
T  23570585 ttgcaagcgacaaacctatcaaaataagggtttccagaatgcaccagaattgagagaaaagtctcgaatattatttatgaataaaagtgtgcctctta 23570488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 137 - 263
Target Start/End: Complemental strand, 6845337 - 6845212
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaa-ttgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttat 235  Q
    ||||||||||||||| |||||||||||  |||| | ||||||||||||| ||||||||||| ||||||||||||||||||||| |||| ||||||||||     
T  6845337 ttgcaagcgacaaacctatcaaaataagggttt-cggaatccaccaaaaattgagagaaaa-tctcgaatattattaatgaatcaaaaagtgtctcttag 6845240  T
Q  236 gctgcataagttctccttatacagtgaa 263  Q
    | | |||||||||| |||||| ||||||    
T  6845239 gatacataagttctgcttatatagtgaa 6845212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 263
Target Start/End: Original strand, 22921938 - 22922065
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaa--tgtgtctctta 234  Q
    ||||||||||||||| |||||||||||  |||| | |||||||||| ||||||||||||| ||||||||| | ||| ||||| ||||  |||||||||||    
T  22921938 ttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa-tctcgaataattttattgaatcaaaaggtgtgtctctta 22922036  T
Q  235 tgctgcataagttctccttatacagtgaa 263  Q
     |||||||||||||| | |||| ||||||    
T  22922037 ggctgcataagttctgcatatatagtgaa 22922065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 22921850 - 22921934
Alignment:
Q  78 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||||||||  |||| |||||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||| | ||||||    
T  22921850 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaataagtttgcaagcgacaaacttgtgaaaata 22921934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 23570660 - 23570588
Alignment:
Q  91 aagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaataa 163  Q
    |||| |||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| | |||||||    
T  23570660 aagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaataa 23570588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 26150657 - 26150581
Alignment:
Q  171 cagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatgctgcataagtt 247  Q
    |||||||||||| ||||||||||||||||||||||||| ||| ||||| |||| ||| |||||| ||||||||||||    
T  26150657 cagaatccaccagaattgagagaaaagtctcgaatatttttattgaatgaaaaagtgcctcttaagctgcataagtt 26150581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 244
Target Start/End: Original strand, 18180771 - 18180877
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatg 236  Q
    ||||||||||||||| |||||||||||  |||| |||||||||||| ||||||||||||| ||||||||| | ||| ||||| |||| ||| |||||| |    
T  18180771 ttgcaagcgacaaacctatcaaaataagggtttccagaatccaccagaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgcctcttagg 18180869  T
Q  237 ctgcataa 244  Q
    || |||||    
T  18180870 ctacataa 18180877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 6845425 - 6845341
Alignment:
Q  78 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||||||||  |||| |||||||| |||||||||||| |||||| |||||||||||||| ||||||| |||||| | ||||||    
T  6845425 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttacaagcgataaacttgtgaaaata 6845341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 22512046 - 22512130
Alignment:
Q  78 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||||||||  |||  |||||||| |||||||||||| ||| || ||||||||||||||||||||||||||||| | ||||||    
T  22512046 tgacgcagtacggaagtgtagggttagcaagcgctaaacctaggtagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 22512130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 22519346 - 22519430
Alignment:
Q  78 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||||||||  |||  |||||||| |||||||||||| ||| || ||||||||||||||||||||||||||||| | ||||||    
T  22519346 tgacgcagtacggaagtgtagggttagcaagcgctaaacctaggtagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 22519430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 22926648 - 22926732
Alignment:
Q  78 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    ||||| |||||  |||| ||||||||  ||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  22926648 tgacgtagtacggaagcgtagggttagaaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 22926732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 42891664 - 42891748
Alignment:
Q  78 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    ||||||| |||  |||| ||||| || |||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  42891664 tgacgcaatacggaagcgtagggctagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 42891748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 262
Target Start/End: Original strand, 42891752 - 42891878
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaat--aaaaatgtgtctctta 234  Q
    ||||||||||||||| |||||||||||  |||| | |||||||||| ||||||||||||| |||| |||| | ||| |||||  |||| |||| ||||||    
T  42891752 ttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa-tctcaaataattttattgaatcaaaaagtgtgcctctta 42891850  T
Q  235 tgctgcataagttctccttatacagtga 262  Q
     ||| |||||||||| |||||| |||||    
T  42891851 ggctacataagttctgcttatatagtga 42891878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 162
Target Start/End: Complemental strand, 37189957 - 37189871
Alignment:
Q  76 attgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||||||||||  |||| |||||||| ||||| |||||  |||||| ||||||| ||||||||||||||||||||| | ||||||    
T  37189957 attgacgcagtacggaagcttagggttagcaagctctaaaactagatagaaaagaataagtttgcaagcgacaaacttgtgaaaata 37189871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 42890454 - 42890397
Alignment:
Q  105 caagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  42890454 caagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 42890397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 2687803 - 2687747
Alignment:
Q  107 agcgctaaacttagata-aaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||| | ||||||    
T  2687803 agcgctaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaata 2687747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 263
Target Start/End: Original strand, 22512134 - 22512262
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaa---tgtgtctctt 233  Q
    ||||||| ||||||| |||||||||||  |||| |  ||||||||| ||||||||||||| ||||||||| | ||| ||||||||||   |||| |||||    
T  22512134 ttgcaagtgacaaacctatcaaaataagggtttccgaaatccaccagaattgagagaaaa-tctcgaataattttattgaataaaaaaagtgtgactctt 22512232  T
Q  234 atgctgcataagttctccttatacagtgaa 263  Q
    | | | ||||||| || |||||| ||||||    
T  22512233 aggttacataagtgctgcttatatagtgaa 22512262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 22520812 - 22520871
Alignment:
Q  91 aagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaa 150  Q
    |||| |||||||| |||||||||||| ||| || |||||| |||||||||||||||||||    
T  22520812 aagcgtagggttagcaagcgctaaacctaggtagaaaagatcaagtttgcaagcgacaaa 22520871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 2189748 - 2189806
Alignment:
Q  105 caagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaataa 163  Q
    |||||||||||| | |||  ||||||||||||||||||||||||||||| | |||||||    
T  2189748 caagcgctaaacctcgattgaaaagaacaagtttgcaagcgacaaacttgtgaaaataa 2189806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 219
Target Start/End: Original strand, 22520887 - 22520968
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaata 219  Q
    ||||||| ||||||| |||||||||||  |||| | |||||||||| ||||||||||||| ||||||||| | ||| ||||||    
T  22520887 ttgcaagtgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa-tctcgaataattttattgaata 22520968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 228
Target Start/End: Complemental strand, 37189867 - 37189778
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccacca-aaattgagagaaaagtctcgaatattattaatgaataaaaatgtgt 228  Q
    ||||||||||||||| |||||||||||  |||   | ||||||||| ||||||||| |||  |||||||||||||||||||||||||| ||||    
T  37189867 ttgcaagcgacaaacctatcaaaataagggttccga-aatccaccagaaattgagaaaaa--tctcgaatattattaatgaataaaaaagtgt 37189778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 162
Target Start/End: Complemental strand, 16598318 - 16598254
Alignment:
Q  99 ggttatcaagcgctaaacttagataaaaaagaa-caagtttgcaagcgacaaacttatcaaaata 162  Q
    ||||| |||||||||||||||||| | |||||| |||||||||| ||||||||||| | ||||||    
T  16598318 ggttagcaagcgctaaacttagattagaaagaaacaagtttgcacgcgacaaacttgtgaaaata 16598254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 859244 - 859334
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtg 227  Q
    ||||||||||||||| |||||||||||| |||| | |||||||||| |||||||||||||||||| |||||||||||||||||||| ||||    
T  859244 ttgcaagcgacaaacctatcaaaataaaggtttccggaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaagtgtg 859334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 1217248 - 1217338
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtg 227  Q
    ||||||||||||||| |||||||||||| |||| | |||||||||| |||||||||||||||||| |||||||||||||||||||| ||||    
T  1217248 ttgcaagcgacaaacctatcaaaataaaggtttccggaatccaccagaattgagagaaaagtctcaaatattattaatgaataaaagtgtg 1217338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 13882686 - 13882770
Alignment:
Q  78 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||||||||  |||| |||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  13882686 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 13882770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 13886159 - 13886243
Alignment:
Q  78 tgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||||||||  |||| |||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  13886159 tgacgcagtacggaagcgtagggttagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 13886243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 263
Target Start/End: Original strand, 13886274 - 13886401
Alignment:
Q  135 gtttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctctta 234  Q
    ||||||||||||||||| |||||||||||  |||| |||||||||||| ||||||||||||| ||||||||  | ||| ||||| |||| ||||||||||    
T  13886274 gtttgcaagcgacaaacctatcaaaataagggtttccagaatccaccataattgagagaaaa-tctcgaatgattttattgaatcaaaaagtgtctctta 13886372  T
Q  235 tgctgcataagttctccttatacagtgaa 263  Q
     | | |||||||||  |||||| ||||||    
T  13886373 ggatacataagttcagcttatatagtgaa 13886401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 137 - 263
Target Start/End: Original strand, 13882774 - 13882899
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatg 236  Q
    ||||||||||||||| |||||||||||  |||| | |||||||||| ||||||||||||| |||| |||| | ||| ||||| |||| |||||||||| |    
T  13882774 ttgcaagcgacaaacctatcaaaataagggtttccggaatccaccagaattgagagaaaa-tctcaaataattttattgaatcaaaaagtgtctcttagg 13882872  T
Q  237 ctgcataagttctccttatacagtgaa 263  Q
     | |||||||||| |||||| ||||||    
T  13882873 atacataagttctgcttatatagtgaa 13882899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 859155 - 859240
Alignment:
Q  77 ttgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||||| |||  |||| |||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  859155 ttgacgcaatacggaagcgtaggattagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 859240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 1217159 - 1217244
Alignment:
Q  77 ttgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||||| |||  |||| |||| ||| |||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  1217159 ttgacgcaatacggaagcgtaggattagcaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 1217244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 5678340 - 5678411
Alignment:
Q  178 caccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatgctgcataagttct 249  Q
    ||||| ||||||||||||||||||||||| | ||| ||||| |||| |||||||||| ||||||||||||||    
T  5678340 caccagaattgagagaaaagtctcgaataattttattgaatgaaaaagtgtctcttaagctgcataagttct 5678411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 5703392 - 5703463
Alignment:
Q  178 caccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatgctgcataagttct 249  Q
    ||||| ||||||||||||||||||||||| | ||| ||||| |||| |||||||||| ||||||||||||||    
T  5703392 caccagaattgagagaaaagtctcgaataattttattgaatgaaaaagtgtctcttaagctgcataagttct 5703463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 263
Target Start/End: Original strand, 1220528 - 1220647
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatg 236  Q
    ||||||||||||||| |||||||||| | ||||       |||||| |||||||||||||||||| |||||| |||||||||| ||  ||| |||||| |    
T  1220528 ttgcaagcgacaaacctatcaaaatagaggttt-------ccaccagaattgagagaaaagtctctaatattgttaatgaatagaagcgtgcctcttagg 1220620  T
Q  237 ctgcataagttctccttatacagtgaa 263  Q
    || ||||||||||  ||||| ||||||    
T  1220621 ctacataagttctgtttatatagtgaa 1220647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 31577271 - 31577380
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatg 236  Q
    ||||||||||||||| ||||||| |||  |||| |  ||||||||| ||||||||||||||||| ||||||| ||| ||||| |||| ||  |||||| |    
T  31577271 ttgcaagcgacaaacctatcaaa-taagggtttccgaaatccaccagaattgagagaaaagtcttgaatatttttattgaatgaaaaagttcctcttagg 31577369  T
Q  237 ctgcataagtt 247  Q
     ||||||||||    
T  31577370 ttgcataagtt 31577380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 162
Target Start/End: Original strand, 1220446 - 1220524
Alignment:
Q  84 agtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    |||||| |||| |||||||| ||| |||||||| || ||| ||| |||||||||||||| |||||||||| | ||||||    
T  1220446 agtacagaagcgtagggttagcaaacgctaaacctacatagaaatgaacaagtttgcaaacgacaaacttgtgaaaata 1220524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 151
Target Start/End: Original strand, 4888715 - 4888758
Alignment:
Q  108 gcgctaaacttagataaaaaagaacaagtttgcaagcgacaaac 151  Q
    ||||| ||| |||||| |||||||||||||||||||||||||||    
T  4888715 gcgctgaacctagatagaaaagaacaagtttgcaagcgacaaac 4888758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 162
Target Start/End: Original strand, 27309636 - 27309699
Alignment:
Q  100 gttatcaagcgctaaacttagataaaaaagaa-caagtttgcaagcgacaaacttatcaaaata 162  Q
    |||| |||||||||||| |||||  ||||||| |||||||||||||||||||||| | ||||||    
T  27309636 gttagcaagcgctaaacctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaata 27309699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 247
Target Start/End: Original strand, 4668258 - 4668363
Alignment:
Q  141 aagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaataaaaatgtgtctcttatgctgc 240  Q
    ||||||||||| ||| ||| |||  |||| || ||||||||  |||| |||||||||||||||||||| ||  | ||| |||| ||| |||||| |||||    
T  4668258 aagcgacaaacctattaaa-taagggtttccataatccacctgaattaagagaaaagtctcgaatattttttttcaatgaaaaagtgcctcttaggctgc 4668356  T
Q  241 ataagtt 247  Q
    |||||||    
T  4668357 ataagtt 4668363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 1786760 - 1786699
Alignment:
Q  91 aagcatagggttatcaagcgctaaacttagata-aaaaagaacaagtttgcaagcgacaaac 151  Q
    |||| |||| ||| |||| ||||||| |||||| ||||| ||||||||||||||||||||||    
T  1786760 aagcgtaggattagcaagtgctaaacctagatagaaaaataacaagtttgcaagcgacaaac 1786699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 29175833 - 29175780
Alignment:
Q  91 aagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagc 144  Q
    |||| |||||||| |||||||||||| |||||  ||||||| ||||||||||||    
T  29175833 aagcgtagggttagcaagcgctaaacctagattgaaaagaaaaagtttgcaagc 29175780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 40778785 - 40778870
Alignment:
Q  77 ttgacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    ||||||||||||  ||||  ||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  40778785 ttgacgcagtacggaagcgcagggttaacaagcgctaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtaaaaata 40778870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 21848966 - 21849049
Alignment:
Q  79 gacgcagtacaaaagcatagggttatcaagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    ||||||||||  |||| |||||||| ||||||| |||| |||||| ||||||||||||||||||||||||||||| | ||||||    
T  21848966 gacgcagtacggaagcgtagggttagcaagcgccaaacctagatagaaaagaacaagtttgcaagcgacaaacttgtgaaaata 21849049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 249
Target Start/End: Original strand, 19677219 - 19677330
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaata-aaaatgtgtctcttat 235  Q
    ||||||||||||||| | ||||| |||  |||||| |||||||||| ||||||||||||||||||||||||| ||| |||||| ||| |||| ||||||     
T  19677219 ttgcaagcgacaaacctttcaaa-taagggttttcggaatccaccagaattgagagaaaagtctcgaatatt-ttattgaatacaaagtgtgcctcttag 19677316  T
Q  236 gctgcataagttct 249  Q
    | ||||||||||||    
T  19677317 gatgcataagttct 19677330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 263
Target Start/End: Original strand, 40778874 - 40779001
Alignment:
Q  137 ttgcaagcgacaaacttatcaaaataaatgttttcagaatccaccaaaattgagagaaaagtctcgaatattattaatgaat--aaaaatgtgtctctta 234  Q
    ||||||||||||||| |||||||||||  ||||   |||||||||| ||||||||||||| ||||||||| | ||| |||||  |||| |||| ||||||    
T  40778874 ttgcaagcgacaaacctatcaaaataagggtttctggaatccaccagaattgagagaaaa-tctcgaataattttattgaatcaaaaagtgtgcctctta 40778972  T
Q  235 tgctgcataagttctccttatacagtgaa 263  Q
      || |||||||||| |||||| ||||||    
T  40778973 gactacataagttctgcttatatagtgaa 40779001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 162
Target Start/End: Original strand, 19497349 - 19497388
Alignment:
Q  123 aaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    ||||||||||||||||||||||||||||||| | ||||||    
T  19497349 aaaaaagaacaagtttgcaagcgacaaacttgtgaaaata 19497388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 22440920 - 22440870
Alignment:
Q  105 caagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttat 155  Q
    |||| ||||||| |||||| ||||||||| ||| |||||||||||||||||    
T  22440920 caagtgctaaacctagatagaaaagaacatgttcgcaagcgacaaacttat 22440870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 492630 - 492581
Alignment:
Q  105 caagcgctaaacttagataaaaaagaa-caagtttgcaagcgacaaactt 153  Q
    ||||||||||| ||||||  ||||||| ||||||||||||||||||||||    
T  492630 caagcgctaaatttagattgaaaagaaacaagtttgcaagcgacaaactt 492581  T

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Target: scaffold0054 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 37772 - 37716
Alignment:
Q  106 aagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    ||||||||||| |||||  ||||||||||||||||||||||||||||||| ||||||    
T  37772 aagcgctaaacctagattgaaaagaacaagtttgcaagcgacaaacttatgaaaata 37716  T

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Target: scaffold0054; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 162
Target Start/End: Complemental strand, 49362 - 49327
Alignment:
Q  127 aagaacaagtttgcaagcgacaaacttatcaaaata 162  Q
    ||||||||||||||||||||||||||||| ||||||    
T  49362 aagaacaagtttgcaagcgacaaacttatgaaaata 49327  T

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Target: scaffold0240 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 16109 - 16063
Alignment:
Q  105 caagcgctaaacttagataaaaaagaacaagtttgcaagcgacaaac 151  Q
    |||| ||||||| |||||| ||||||||||||||||||| |||||||    
T  16109 caagtgctaaacctagatagaaaagaacaagtttgcaagtgacaaac 16063  T

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