View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12518_low_26 (Length: 250)
Name: NF12518_low_26
Description: NF12518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12518_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 53808470 - 53808251
Alignment:
| Q |
1 |
tggttaatttagcgaggataagcggacaatttgtaaccatcaccaatgaatggagagtaagaggacaaatactattcaaatatcattaggatcaatgttt |
100 |
Q |
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|||| |||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53808470 |
tggtcaatttagcgaggataaacagacaatttgtaaccatcatcaatgaatggagagtaagaggacaaatactattcaaatatcattaggatcaatgttt |
53808371 |
T |
|
| Q |
101 |
aaggcatgacaacaatcaatattagttatgtaatataaagaataaatcaagaaataagatagttctcaccgcaattccctttaggagtaagataatttta |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
53808370 |
aaggcatgacaaaaatcaatattagttatgtaatataaagaataaatcaagaaataagatagttctcactgcaattccctttaggagtaagataatttta |
53808271 |
T |
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| Q |
201 |
ctttgaattatttcactctct |
221 |
Q |
| |
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||||||| ||||||||||||| |
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| T |
53808270 |
ctttgaa-tatttcactctct |
53808251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 41982190 - 41982291
Alignment:
| Q |
8 |
tttagcgaggataagcggacaatttgtaaccatcaccaatgaatggagagtaagaggacaaatactattcaaatatcattaggatcaatgtttaaggcat |
107 |
Q |
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|||||| || |||| | ||||||||||||||| | |||| ||||||||| |||||| | | | | |||||||||||||||||||||||||||| ||||| |
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| T |
41982190 |
tttagcaagcataaacagacaatttgtaaccaccgccaaagaatggagaataagagcattacttcgattcaaatatcattaggatcaatgtttagggcat |
41982289 |
T |
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| Q |
108 |
ga |
109 |
Q |
| |
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|| |
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| T |
41982290 |
ga |
41982291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 43 - 170
Target Start/End: Original strand, 19043262 - 19043389
Alignment:
| Q |
43 |
ccaatgaatggagagtaagaggacaaatactattcaaatatcattaggatcaatgtttaaggcatgacaacaatcaatattagttatgtaatataaagaa |
142 |
Q |
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||||||||||||||||||||||| | | |||||||||| ||||||||||||||||||| |||||||||| ||||||| |||||||||||||||| ||| |
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| T |
19043262 |
ccaatgaatggagagtaagaggattacttctattcaaatttcattaggatcaatgtttagggcatgacaaagatcaataatagttatgtaatataatgaa |
19043361 |
T |
|
| Q |
143 |
taaatcaagaaataagatagttctcacc |
170 |
Q |
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|||||||||||||| |||||||| |||| |
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| T |
19043362 |
taaatcaagaaatatgatagttcccacc |
19043389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 47225897 - 47225973
Alignment:
| Q |
78 |
aaatatcattaggatcaatgtttaaggcatgacaacaatcaatattagttatgtaatataaagaataaatcaagaaa |
154 |
Q |
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|||||||||||| ||||||||| | |||| |||| ||||||||||| ||||||||||||| ||||||| |||||| |
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| T |
47225897 |
aaatatcattagaatcaatgttgagggcacgacagagatcaatattagctatgtaatataaataataaatgaagaaa |
47225973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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