View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12518_low_29 (Length: 242)
Name: NF12518_low_29
Description: NF12518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12518_low_29 |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 12508510 - 12508733
Alignment:
| Q |
19 |
atgatactaatccttgatcatcactgcatggtgttgtaccgtctgttgatactgctagggcgaagttggttcgagcattttctccgcgtaaagctcgagc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12508510 |
atgatactaatccttgatcatcactgcatggtgttgtaccgtctgttgatactgctagggcgaagttggttcgagcattttctccgcgtaaagctcgagc |
12508609 |
T |
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| Q |
119 |
agcttcgtcgtaagctcgagcagcttcttctggtgtgtcataggttccaagccataatcttacatgttgagatgagtctttgatctcagctacccatcta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12508610 |
agcttcgtcgtaagctcgagcagcttcttctggtgtgtcataggttccaagccataatcttacatgttgagatgagtctttgatctcagctacccatcta |
12508709 |
T |
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| Q |
219 |
cctgatggcctttgtctcacacca |
242 |
Q |
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|||||||||||||||||||||||| |
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| T |
12508710 |
cctgatggcctttgtctcacacca |
12508733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 242
Target Start/End: Original strand, 33274267 - 33274392
Alignment:
| Q |
117 |
gcagcttcgtcgtaagctcgagcagcttcttctggtgtgtcataggttccaagccataatcttacatgttgagatgagtctttgatctcagctacccatc |
216 |
Q |
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|||||||| || ||||||| ||| ||||| || | ||| ||| | ||||||||||| | ||||| | |||| || ||||||||||||||||||||||| |
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| T |
33274267 |
gcagcttcatcataagctctagctgcttcctcagctgtctcaaatgttccaagccacattcttatcttctgagttgtgtctttgatctcagctacccatc |
33274366 |
T |
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| Q |
217 |
tacctgatggcctttgtctcacacca |
242 |
Q |
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| T |
33274367 |
tccctgatggcctttgcctaacacca |
33274392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 3160268 - 3160221
Alignment:
| Q |
195 |
tctttgatctcagctacccatctacctgatggcctttgtctcacacca |
242 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3160268 |
tcttttatctcagctacccatcttcctgatggcctttgtctcacacca |
3160221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 46024103 - 46024054
Alignment:
| Q |
189 |
gatgagtctttgatctcagctacccatctacctgatggcctttgtctcac |
238 |
Q |
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| T |
46024103 |
gatgagtctttgatctcagctatccatcttcctgatggcctttgcctcac |
46024054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 46265264 - 46265313
Alignment:
| Q |
189 |
gatgagtctttgatctcagctacccatctacctgatggcctttgtctcac |
238 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||| ||||| |
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| T |
46265264 |
gatgagtctttgatctcagctatccatcttcctgatggcctttgcctcac |
46265313 |
T |
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