View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12518_low_33 (Length: 219)
Name: NF12518_low_33
Description: NF12518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12518_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 48653411 - 48653620
Alignment:
| Q |
1 |
aaagggttttccaacaagtttgagctgtgctatgtagccagtaatatctcctctaataggatcatcatcttctaaacaatcatcaaagaactcaaaagtg |
100 |
Q |
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| T |
48653411 |
aaagggttttccaacaagtttgagctgtgctatgtagccagtaatatctcctctaataggatcatcatcttctaaacaatcatcaaagaactcaaaagtg |
48653510 |
T |
|
| Q |
101 |
agtgaaccatcaccaattggagtgaatgatttttcaatgatgttgttaacagttcttatgtcttttccagctctttctgttgtcatgaaaatgacagaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
48653511 |
agtgaaccatcaccaattggagtgaatgatttttcaatgatgttgttaacagttcttatgtcttttccagctctttctgttgtgatgaaaatgacagaag |
48653610 |
T |
|
| Q |
201 |
caccctttgc |
210 |
Q |
| |
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|||||||||| |
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| T |
48653611 |
caccctttgc |
48653620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 48618044 - 48617835
Alignment:
| Q |
1 |
aaagggttttccaacaagtttgagctgtgctatgtagccagtaatatctcctctaataggatcatcatcttctaaacaatcatcaaagaactcaaaagtg |
100 |
Q |
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|||||||||||||||||||||||| ||| |||||||||| || || |||||||| ||||| |||||||||||||| |||||| |||||||||||||| |
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| T |
48618044 |
aaagggttttccaacaagtttgagatgttctatgtagcctaaaagatttcctctaagaggatgatcatcttctaaaccatcatctaagaactcaaaagta |
48617945 |
T |
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| Q |
101 |
agtgaaccatcaccaattggagtgaatgatttttcaatgatgttgttaacagttcttatgtcttttccagctctttctgttgtcatgaaaatgacagaag |
200 |
Q |
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| T |
48617944 |
agagaaccatcaccaattgaagtgagtgatttttcaatgatattgttaacagttcttatgtctttgccagctttctctgttgtgatgaagatgacagaag |
48617845 |
T |
|
| Q |
201 |
caccctttgc |
210 |
Q |
| |
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|||||||||| |
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| T |
48617844 |
caccctttgc |
48617835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 210
Target Start/End: Original strand, 11547526 - 11547731
Alignment:
| Q |
5 |
ggttttccaacaagtttgagctgtgctatgtagccagtaatatctcctctaataggatcatcatcttctaaacaatcatcaaagaactcaaaagtgagtg |
104 |
Q |
| |
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||||| |||| |||||| || ||| ||||||||||| || || | | ||||||||||||||||||| ||||| |||||||||||||||||||||||| | |
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| T |
11547526 |
ggtttcccaaaaagttttagttgttctatgtagccacaaagatttgccctaataggatcatcatcttgtaaaccatcatcaaagaactcaaaagtgagag |
11547625 |
T |
|
| Q |
105 |
aaccatcaccaattggagtgaatgatttttcaatgatgttgttaacagttcttatgtcttttccagctctttctgttgtcatgaaaatgacagaagcacc |
204 |
Q |
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| T |
11547626 |
aaccattacctattgatgtgactgatttttcaacgatgttgttaaccgtttgtatgtctttgccagctttctttgttgtgatgaagatgacagaagcacc |
11547725 |
T |
|
| Q |
205 |
ctttgc |
210 |
Q |
| |
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|||||| |
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|
| T |
11547726 |
ctttgc |
11547731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 210
Target Start/End: Original strand, 48585690 - 48585827
Alignment:
| Q |
73 |
taaacaatcatcaaagaactcaaaagtgagtgaaccatcaccaattggagtgaatgatttttcaatgatgttgttaacagttcttatgtcttttccagct |
172 |
Q |
| |
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||||| ||||||||||||||| |||| || | |||||||||||||||||| | |||| ||||||||||||||| ||| || |||| ||| ||||| |
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| T |
48585690 |
taaaccatcatcaaagaactcgaaagcgaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatgtttttgccagcc |
48585789 |
T |
|
| Q |
173 |
ctttctgttgtcatgaaaatgacagaagcaccctttgc |
210 |
Q |
| |
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| |||||||| |||| || |||| ||||||||||| |
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| T |
48585790 |
gtctctgttgtggtgaagataacagtggcaccctttgc |
48585827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 210
Target Start/End: Original strand, 48640263 - 48640400
Alignment:
| Q |
73 |
taaacaatcatcaaagaactcaaaagtgagtgaaccatcaccaattggagtgaatgatttttcaatgatgttgttaacagttcttatgtcttttccagct |
172 |
Q |
| |
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||||| ||| ||||||||||| |||| || | |||||||||||||||||| | |||| ||||||||||||||| ||| || |||| ||| ||||| |
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| T |
48640263 |
taaaccatcgtcaaagaactcgaaagcgaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatgtttttgccagcc |
48640362 |
T |
|
| Q |
173 |
ctttctgttgtcatgaaaatgacagaagcaccctttgc |
210 |
Q |
| |
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| |||||||| |||| || |||| ||||||||||| |
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| T |
48640363 |
gtctctgttgtggtgaagataacagtggcaccctttgc |
48640400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 48629203 - 48629263
Alignment:
| Q |
63 |
catcatcttctaaacaatcatcaaagaactcaaaagtgagtgaaccatcaccaattggagt |
123 |
Q |
| |
|
|||||||| |||||||| |||||||||||| |||||||| ||||||| || |||||||| |
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|
| T |
48629203 |
catcatctagtaaacaatgatcaaagaactcgaaagtgaggcaaccatcgcctattggagt |
48629263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 48667587 - 48667623
Alignment:
| Q |
174 |
tttctgttgtcatgaaaatgacagaagcaccctttgc |
210 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||| |
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| T |
48667587 |
tttctgttgtgatgaagatgacagaagcaccctttgc |
48667623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 210
Target Start/End: Complemental strand, 19665350 - 19665191
Alignment:
| Q |
51 |
ctctaataggatcatcatcttctaaacaatcatcaaagaactcaaaagtgagtgaaccatcaccaattggagtgaatgatttttcaatgatgttgttaac |
150 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||| | ||| |||| ||||||||||| |||||||||| |||||| | | ||||||||||||| |
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| T |
19665350 |
ctctaatgggatcatcatcttctaaaccatcatcaaagaagtggaaaatgagagaaccatcacctattggagtgagtgatttgtgagtgatgttgttaac |
19665251 |
T |
|
| Q |
151 |
agttcttatgtcttttccagctctttctgttgtcatgaaaatgacagaagcaccctttgc |
210 |
Q |
| |
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|||| |||||||| |||||| | ||||| || ||||| ||||| |||| ||||||||| |
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|
| T |
19665250 |
agtttgcatgtctttgccagctttctctgtagtgatgaagatgactgaagaaccctttgc |
19665191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 52 - 209
Target Start/End: Original strand, 27224312 - 27224469
Alignment:
| Q |
52 |
tctaataggatcatcatcttctaaacaatcatcaaagaactcaaaagtgagtgaaccatcaccaattggagtgaatgatttttcaatgatgttgttaaca |
151 |
Q |
| |
|
|||||| |||||||||||| ||||| ||||||||||||| ||| ||||| ||||||| ||||| |||| ||| | |||||||| |||| ||||||||| |
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| T |
27224312 |
tctaatgggatcatcatctgataaaccgtcatcaaagaactgaaatgtgagagaaccattaccaactggaatgactaatttttcagtgatattgttaaca |
27224411 |
T |
|
| Q |
152 |
gttcttatgtcttttccagctctttctgttgtcatgaaaatgacagaagcaccctttg |
209 |
Q |
| |
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||||| | ||||| |||||| | |||||||| ||||| || ||||||| |||||||| |
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|
| T |
27224412 |
gttctcaattctttgccagctttctctgttgtgatgaagataacagaagaaccctttg |
27224469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 209
Target Start/End: Original strand, 27228514 - 27228672
Alignment:
| Q |
51 |
ctctaataggatcatcatcttctaaacaatcatcaaagaactcaaaagtgagtgaaccatcaccaattggagtgaatgatttttcaatgatgttgttaac |
150 |
Q |
| |
|
||||||| |||||||||||| ||||| || ||||||||||| || | ||| ||||||| ||||| |||| ||| |||||| ||||||||||||||||| |
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| T |
27228514 |
ctctaatgggatcatcatctgataaaccgtcttcaaagaactcgaatgcgagagaaccattaccaactggaatgactgatttatcaatgatgttgttaac |
27228613 |
T |
|
| Q |
151 |
agttcttatgtcttttccagctctttctgttgtcatgaaaatgacagaagcaccctttg |
209 |
Q |
| |
|
|||||| | ||| | |||||| | || ||||| ||||| || ||||||| |||||||| |
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|
| T |
27228614 |
agttctcaactctctgccagctttctcagttgtgatgaagataacagaagaaccctttg |
27228672 |
T |
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