View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12518_low_5 (Length: 461)
Name: NF12518_low_5
Description: NF12518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12518_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 15 - 451
Target Start/End: Complemental strand, 3641871 - 3641435
Alignment:
| Q |
15 |
agtaatcattgatgttgaaaaaatttatatttcttcgctcatatcaacatcatttcgaacttctgggacttgaacagatcggagtgaaagcgtactgctt |
114 |
Q |
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| T |
3641871 |
agtaatcattgatgttgaaaaaatttatatttcttcgctcatatcaacatcatttcgaacttctgggacttgaacagatcggagtgaaagcgtactgttt |
3641772 |
T |
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| Q |
115 |
tcttccgtcaaaggaattaaatttccagaatataagcttttgatgatccagctagaagtctgcaaaacaaaaaccaatgcacttcagaaataaacacaat |
214 |
Q |
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| T |
3641771 |
tcttccgtcaaaggaattaaatttccagaatataagcttttgatgatccagctagaagtctgcaaaacaaaaaccaatgcacttcagaaataaacacaat |
3641672 |
T |
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| Q |
215 |
cacttagagaataacatacaatcacttgataaacagtacgtaaacaggaaaatatcaagaggtctgtttttgtacgaaattgaaggactgaagagtaaat |
314 |
Q |
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| T |
3641671 |
cacttagagaataacatacaatcacttgataaacagtacgtaaacaggaaaatatcaagaggtctgtttttgtacgaaattgaaggactgaagagtaaat |
3641572 |
T |
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| Q |
315 |
cttgaccttaactatacatttcttttttacatgaaaggtcaaaattaagtagtttgttgacatatatcttctctcaagacatttctgattttactacctg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3641571 |
cttgaccttaactatacatttcttttttacatgaaaggtcaaaattaagtagtttgttgacatatatcttctctcaagacatttctgattttactacctg |
3641472 |
T |
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| Q |
415 |
cactctgacatttctaaaatcggttctttaagttcat |
451 |
Q |
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| T |
3641471 |
cactctgacatttctaaaatcggttctttaagttcat |
3641435 |
T |
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