View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12518_low_6 (Length: 454)
Name: NF12518_low_6
Description: NF12518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12518_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 30 - 388
Target Start/End: Complemental strand, 31134845 - 31134470
Alignment:
| Q |
30 |
aaagctccaacctcacagcaatggtcctcaatattggttcaatataagattttacctacaaatgtactacaatcaaaaatggaataaaaaatatccaatt |
129 |
Q |
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| T |
31134845 |
aaagctccaaccccatagcaatggtcctcaatattggttcaatataagcttttacctacaatt-tactacaatcaaaaatggaataaaaaatatccaata |
31134747 |
T |
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| Q |
130 |
---------------aatattaaatgagaaagacttcaaaagtaatattacatttgtataaccgtttgccttcttgtctaggtatcttgcaaattcaaca |
214 |
Q |
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| T |
31134746 |
gttgtataaattgaaaataggaaatgagaaagacttcgaaattaatattacatttgtataatcatttgccttcttgtttaggtatcttgcaaattcgaca |
31134647 |
T |
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| Q |
215 |
caaaaatctcggatttcaagttgggaacattgtgtggcgcattcataaacaactttcacaaactctatt---ccatttctctcttcaacctaaaagttac |
311 |
Q |
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| T |
31134646 |
caaaaatctcggacttcaagctcggaacaatgtctggcgcatttacaaacaactttcacaaactctattcgactatttccctcttcaacctaatagttac |
31134547 |
T |
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| Q |
312 |
aaatataattgacgatcatgagattcaagcacacccggtaagaaaatatcataattattaagcacctattccatatt |
388 |
Q |
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| T |
31134546 |
aaatataattgatgatcatgagattcaagcacacccagtaagaaaatatcataattattaagcaccttttccatatt |
31134470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 392 - 441
Target Start/End: Complemental strand, 31134431 - 31134382
Alignment:
| Q |
392 |
tatccaatttatgtctagatgtataaaaacaataaatatatctaataatt |
441 |
Q |
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| T |
31134431 |
tatccaatttatgtctagatgtataaaaacaataaatgtatctaataatt |
31134382 |
T |
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