View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12518_low_7 (Length: 431)

Name: NF12518_low_7
Description: NF12518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12518_low_7
NF12518_low_7
[»] chr3 (10 HSPs)
chr3 (227-421)||(7431711-7431905)
chr3 (263-403)||(802886-803024)
chr3 (263-416)||(997781-997934)
chr3 (263-416)||(1014171-1014324)
chr3 (326-386)||(1889348-1889408)
chr3 (311-356)||(3754865-3754910)
chr3 (342-386)||(1890830-1890874)
chr3 (134-206)||(1940141-1940213)
chr3 (326-386)||(2932153-2932213)
chr3 (345-393)||(13479803-13479851)
[»] chr4 (1 HSPs)
chr4 (270-401)||(22671841-22671970)
[»] scaffold0044 (1 HSPs)
scaffold0044 (342-400)||(89382-89440)
[»] chr5 (4 HSPs)
chr5 (263-381)||(23813789-23813907)
chr5 (106-167)||(11082252-11082313)
chr5 (273-338)||(23732446-23732511)
chr5 (359-395)||(6401362-6401398)
[»] chr2 (1 HSPs)
chr2 (314-388)||(33038443-33038517)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 3e-89; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 227 - 421
Target Start/End: Original strand, 7431711 - 7431905
Alignment:
Q  227 tagttaacaatgatatatgaaataaccgacaatcaccaagtaaaaaataaatagcataaacataaattaacacataggttatttttgaatctcatgttta 326  Q
    |||||||||||||||| |||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7431711 tagttaacaatgatatgtgaaataaccaacaattagcaagtaaaaaataaatagcataaacataaattaacacataggttatttttgaatctcatgctta 7431810  T
Q  327 agtgatatagcacagcatctacatcctagcggtaagaacaaggagatatcaaactctcaatgcaaacttttggggtggaatcaaactcagtgaac 421  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  7431811 agtgatatagcacagcatctacatcctagcggtaagaacaaggagatatcaaactctcaatgcaaacttttggggtgggatcaaacttagtgaac 7431905  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 263 - 403
Target Start/End: Original strand, 802886 - 803024
Alignment:
Q  263 caagtaaaaaataaatagcataaacataaattaacacataggttatttttgaatctcatgtttaagtgatatagcacagcatctacatcctagcggtaag 362  Q
    ||||||||||| ||||| |||||||||||||||| | |||||||   || |||||||||| |||||||| || |||| |||||||| || | ||  ||||    
T  802886 caagtaaaaaagaaataacataaacataaattaaaatataggtt-ccttagaatctcatgcttaagtga-attgcaccgcatctacgtcttcgcattaag 802983  T
Q  363 aacaaggagatatcaaactctcaatgcaaacttttggggtg 403  Q
    ||||||| |||||||| ||||||||||| | || |||||||    
T  802984 aacaaggtgatatcaagctctcaatgcagatttctggggtg 803024  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 416
Target Start/End: Complemental strand, 997934 - 997781
Alignment:
Q  263 caagtaaaaaataaatagcataaacataaattaacacataggttatttttgaatctcatgtttaagtgatatagcacagcatctacatcctagcggtaag 362  Q
    |||||| |||||||||| |||||||||||||||||| ||||| | |  || ||| ||||  | |||||| |||||||  |||| |||| |||||  ||||    
T  997934 caagtacaaaataaatatcataaacataaattaacatataggctctagttaaatatcatactcaagtgacatagcacctcatcaacatactagcattaag 997835  T
Q  363 aacaaggagatatcaaactctcaatgcaaacttttggggtggaatcaaactcag 416  Q
    || || | ||||| |||||||||| ||| |||| |||| |||  ||||||||||    
T  997834 aaaaaagggatattaaactctcaacgcagacttctgggttgggttcaaactcag 997781  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 416
Target Start/End: Complemental strand, 1014324 - 1014171
Alignment:
Q  263 caagtaaaaaataaatagcataaacataaattaacacataggttatttttgaatctcatgtttaagtgatatagcacagcatctacatcctagcggtaag 362  Q
    |||||| |||||||||| |||| ||||||||||||| ||||| | |  || ||| ||||  | |||||| |||||||  |||| |||| |||||  ||||    
T  1014324 caagtacaaaataaatatcatatacataaattaacatataggctctagttaaatatcatactcaagtgacatagcacctcatcaacatactagcattaag 1014225  T
Q  363 aacaaggagatatcaaactctcaatgcaaacttttggggtggaatcaaactcag 416  Q
    || || | ||||| |||||||||| ||| |||| |||| |||  ||||||||||    
T  1014224 aaaaaagggatattaaactctcaacgcagacttctgggttgggttcaaactcag 1014171  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 386
Target Start/End: Original strand, 1889348 - 1889408
Alignment:
Q  326 aagtgatatagcacagcatctacatcctagcggtaagaacaaggagatatcaaactctcaa 386  Q
    |||||| |||||||  ||||||||| |||||  ||||||||||| ||||||||||||||||    
T  1889348 aagtgacatagcaccacatctacattctagcattaagaacaaggtgatatcaaactctcaa 1889408  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 356
Target Start/End: Complemental strand, 3754910 - 3754865
Alignment:
Q  311 ttgaatctcatgtttaagtgatatagcacagcatctacatcctagc 356  Q
    |||||||| |||||||||||| |||||||  |||||||||||||||    
T  3754910 ttgaatcttatgtttaagtgacatagcaccacatctacatcctagc 3754865  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 386
Target Start/End: Original strand, 1890830 - 1890874
Alignment:
Q  342 catctacatcctagcggtaagaacaaggagatatcaaactctcaa 386  Q
    ||||||||| |||||  ||||||||||| ||||||||||||||||    
T  1890830 catctacattctagcattaagaacaaggcgatatcaaactctcaa 1890874  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 1940141 - 1940213
Alignment:
Q  134 aaaatgtaatgcatgataagaggacaaaaacctcaagcaaataaataaatttaaataacaatagtttctcaag 206  Q
    |||||| ||||||||||||||| ||||| ||||||| |||| |||||| |  ||||||| | | |||||||||    
T  1940141 aaaatgaaatgcatgataagagaacaaagacctcaaacaaacaaataagtaaaaataactacaatttctcaag 1940213  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 386
Target Start/End: Complemental strand, 2932213 - 2932153
Alignment:
Q  326 aagtgatatagcacagcatctacatcctagcggtaagaacaaggagatatcaaactctcaa 386  Q
    |||||||||||| |  ||||| ||| |||||  ||||||||||| ||||||||||||||||    
T  2932213 aagtgatatagccccacatctgcattctagcattaagaacaaggtgatatcaaactctcaa 2932153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 393
Target Start/End: Complemental strand, 13479851 - 13479803
Alignment:
Q  345 ctacatcctagcggtaagaacaaggagatatcaaactctcaatgcaaac 393  Q
    |||||||||| || ||| ||||||| |||||||||||||||| ||||||    
T  13479851 ctacatcctatcgttaaaaacaaggcgatatcaaactctcaacgcaaac 13479803  T

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Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 270 - 401
Target Start/End: Original strand, 22671841 - 22671970
Alignment:
Q  270 aaaataaatagcataaacataaattaacacataggttatttttgaatctcatgtttaagtgatatagcacagcatctacatcctagcggtaagaacaagg 369  Q
    |||||||||| |||||||||||||||||| ||||||| |  ||  ||||||| ||||  ||| |||||||  ||||||||| |||||  |||||||||||    
T  22671841 aaaataaatatcataaacataaattaacatataggttctggttagatctcattttta--tgacatagcacctcatctacatactagcactaagaacaagg 22671938  T
Q  370 agatatcaaactctcaatgcaaacttttgggg 401  Q
     ||||| |||||||||| |||||||| |||||    
T  22671939 tgatattaaactctcaacgcaaacttctgggg 22671970  T

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Target: scaffold0044 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 342 - 400
Target Start/End: Complemental strand, 89440 - 89382
Alignment:
Q  342 catctacatcctagcggtaagaacaaggagatatcaaactctcaatgcaaacttttggg 400  Q
    ||||||||||||| || ||||||||||| |||||||||||||||||| | |||||||||    
T  89440 catctacatcctaacgttaagaacaaggtgatatcaaactctcaatgtagacttttggg 89382  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 381
Target Start/End: Original strand, 23813789 - 23813907
Alignment:
Q  263 caagtaaaaaataaatagcataaacataaattaacacataggttatttttgaatctcatgtttaagtgatatagcacagcatctacatcctagcggtaag 362  Q
    |||||| |||||||||| |||||||||||||||| | |||| |  |  |||||||||||||| ||| |||||||||   |  |||||| ||| |  ||||    
T  23813789 caagtacaaaataaatatcataaacataaattaaaatatagttcttagttgaatctcatgttcaagcgatatagcatcactactacattctaacattaag 23813888  T
Q  363 aacaaggagatatcaaact 381  Q
    ||||||| |||||||||||    
T  23813889 aacaaggtgatatcaaact 23813907  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 11082313 - 11082252
Alignment:
Q  106 taacataatgcatatatgtgaactgtataaaatgtaatgcatgataagaggacaaaaacctc 167  Q
    |||| |||||||||  |||||||| ||| |||||||||| ||||| |||| |||||||||||    
T  11082313 taacgtaatgcataattgtgaactatatcaaatgtaatgtatgatgagagaacaaaaacctc 11082252  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 338
Target Start/End: Complemental strand, 23732511 - 23732446
Alignment:
Q  273 ataaatagcataaacataaattaacacataggttatttttgaatctcatgtttaagtgatatagca 338  Q
    ||||||| |||||||||||||||| | |||| || |  |||||||||||||| ||| |||||||||    
T  23732511 ataaatatcataaacataaattaaaatatagtttttagttgaatctcatgttcaagcgatatagca 23732446  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 6401362 - 6401398
Alignment:
Q  359 taagaacaaggagatatcaaactctcaatgcaaactt 395  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  6401362 taagaaaaaggagatatcaaactctcaatgtaaactt 6401398  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 388
Target Start/End: Complemental strand, 33038517 - 33038443
Alignment:
Q  314 aatctcatgtttaagtgatatagcacagcatctacatcctagcggtaagaacaaggagatatcaaactctcaatg 388  Q
    ||||||||||| |||||| ||| || ||||||||||||||| |  ||||||||||| ||||||| ||| ||||||    
T  33038517 aatctcatgttcaagtgacatatcatagcatctacatcctaacattaagaacaaggtgatatcagactttcaatg 33038443  T

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