View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12518_low_9 (Length: 403)
Name: NF12518_low_9
Description: NF12518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12518_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 54952802 - 54952432
Alignment:
| Q |
18 |
actgtgggataaacacacctgtccctttgctttgtcttctcaaagccatttgctcgtacaggaaatttgactgtggaggaggatggattgctccagagaa |
117 |
Q |
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| T |
54952802 |
actgtgggataaacacacctgtccctttgctttgtcttctcaaagccatttgctcgtacaggaaatttgactgtggaggaggatggattgctccagagaa |
54952703 |
T |
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| Q |
118 |
agactgaaaatttgtttaagaatattaattaagatcataattatagttagcataatgaataaaatcactatttggtcaattccataattggaaattgttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
54952702 |
agactgaaaatttgtttaagaatattaattaagatcataattatcgttagcataatgaataaaatcactctttggtcaataccataattggaaattgttt |
54952603 |
T |
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| Q |
218 |
agtgtgaatatatgtggaatttgaattaaattgttcacatttagaccgtcggattaagatcagacaattcatgctctaactttatattttagactcgagt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
54952602 |
agtgtgaatatatgtggaatttgaattaaattgttcacatttagaccgtcggatcaagattagacaattcatgctctaattttatattttagactcgagt |
54952503 |
T |
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| Q |
318 |
cagaaagtgagtgagtcgtaatatgtagtattcatgaatttcggaatagcaatgtcccgtgagatatatgt |
388 |
Q |
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| |||||||||||||||||||||| ||||||||||||||||||| |||||||| |||| |||||||||||| |
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| T |
54952502 |
cggaaagtgagtgagtcgtaatatatagtattcatgaatttcgggatagcaatatcccatgagatatatgt |
54952432 |
T |
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