View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12519_high_6 (Length: 250)

Name: NF12519_high_6
Description: NF12519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12519_high_6
NF12519_high_6
[»] chr3 (8 HSPs)
chr3 (1-232)||(33618311-33618542)
chr3 (34-232)||(33609169-33609367)
chr3 (4-213)||(33588423-33588632)
chr3 (4-213)||(33595595-33595804)
chr3 (4-213)||(33602726-33602935)
chr3 (14-212)||(33627539-33627737)
chr3 (22-159)||(33622521-33622658)
chr3 (65-131)||(33562979-33563045)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 33618311 - 33618542
Alignment:
Q  1 atcaagtggacagaaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggcatttgcaatcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33618311 atcaagtggacagaaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggcatttgcaatcc 33618410  T
Q  101 cgtttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttcactctgtgggttttggacacgacggagctttactttccgc 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33618411 cgtttttccaacagcttacagggatcaatattgtagccttttattcacccaacctctttcactctgtgggttttggacacgacggagctttactttccgc 33618510  T
Q  201 cattatacttggatctgttagccttttgtcta 232  Q
    ||||||||||||||||||||||||||||||||    
T  33618511 cattatacttggatctgttagccttttgtcta 33618542  T

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Target: chr3; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 34 - 232
Target Start/End: Original strand, 33609169 - 33609367
Alignment:
Q  34 caagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggcatttgcaatcccgtttttccaacagcttacagggatcaacattg 133  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |    
T  33609169 caagagccctttaaaaccatattaaaaagggagtatcgacctcacttggtgatggcatttgcaatcccatttttccaacaacttaccgggatcaacatcg 33609268  T
Q  134 tagccttttattcacccaacctctttcactctgtgggttttggacacgacggagctttactttccgccattatacttggatctgttagccttttgtcta 232  Q
    | || || |||||||| |||||||| || |||||||| || ||||  ||||| |||||| ||||||||||| |||||||||| ||||||||| ||||||    
T  33609269 tcgctttctattcacctaacctcttccattctgtgggcttgggacgtgacggcgctttaatttccgccattgtacttggatccgttagccttgtgtcta 33609367  T

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Target: chr3; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 4 - 213
Target Start/End: Original strand, 33588423 - 33588632
Alignment:
Q  4 aagtggacagaaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggcatttgcaatcccgt 103  Q
    ||||||||||||||| ||||| |||||||||||||||| ||||  ||||||||| | ||  ||||||||||||||||||| ||||||||| ||||||| |    
T  33588423 aagtggacagaaatttcgaaagcagtgcaacaagagccatttatgaccatattagagagacaatatcgacctcacttggtcatggcattttcaatcccat 33588522  T
Q  104 ttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttcactctgtgggttttggacacgacggagctttactttccgccat 203  Q
    |||| |||||| ||||||||||||||||||| || || |||||||| ||||||||||| ||||||||||| ||| || |||| ||||||||||| ||| |    
T  33588523 tttttcaacagtttacagggatcaacattgtcgctttctattcaccaaacctctttcaatctgtgggtttaggaaacaacggtgctttactttctgccgt 33588622  T
Q  204 tatacttgga 213  Q
    ||| ||||||    
T  33588623 tattcttgga 33588632  T

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Target: chr3; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 4 - 213
Target Start/End: Original strand, 33595595 - 33595804
Alignment:
Q  4 aagtggacagaaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggcatttgcaatcccgt 103  Q
    ||||||||||||||| ||||| |||||||||||||||| ||||  ||||||||  | ||  ||||||||||||||||||| ||||||||| ||||||| |    
T  33595595 aagtggacagaaatttcgaaagcagtgcaacaagagccatttatgaccatatttgagagacaatatcgacctcacttggtcatggcattttcaatcccat 33595694  T
Q  104 ttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttcactctgtgggttttggacacgacggagctttactttccgccat 203  Q
    |||| |||||| ||||||||||||||||||| || || |||||||| ||||||||||| ||||||||||| ||| || |||| ||||||||||| ||| |    
T  33595695 tttttcaacagtttacagggatcaacattgtcgctttctattcaccaaacctctttcaatctgtgggtttaggaaacaacggtgctttactttctgccgt 33595794  T
Q  204 tatacttgga 213  Q
    ||| ||||||    
T  33595795 tattcttgga 33595804  T

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Target: chr3; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 4 - 213
Target Start/End: Original strand, 33602726 - 33602935
Alignment:
Q  4 aagtggacagaaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggcatttgcaatcccgt 103  Q
    ||||||||||||||| ||||| |||||||||||||||| ||||  ||||||||  | ||  ||||||||||||||||||| ||||||||| ||||||| |    
T  33602726 aagtggacagaaatttcgaaagcagtgcaacaagagccatttatgaccatatttgagagacaatatcgacctcacttggtcatggcattttcaatcccat 33602825  T
Q  104 ttttccaacagcttacagggatcaacattgtagccttttattcacccaacctctttcactctgtgggttttggacacgacggagctttactttccgccat 203  Q
    |||| |||||| ||||||||||||||||||| || || |||||||| ||||||||||| ||||||||||| ||| || |||| ||||||||||| ||| |    
T  33602826 tttttcaacagtttacagggatcaacattgtcgctttctattcaccaaacctctttcaatctgtgggtttaggaaacaacggtgctttactttctgccgt 33602925  T
Q  204 tatacttgga 213  Q
    ||| ||||||    
T  33602926 tattcttgga 33602935  T

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Target: chr3; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 33627539 - 33627737
Alignment:
Q  14 aaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggcatttgcaatcccgtttttccaaca 113  Q
    ||||||| |||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||  | |||||||||||||| |||||    
T  33627539 aaattgcaaaatcactgcaacaagagccctttaaaaccatattcaaaagggagtatcgacctcacttggtaatggcgatagcaatcccgttttttcaaca 33627638  T
Q  114 gcttacagggatcaacattgtagccttttattcacccaacctctttcactctgtgggttttggacacgacggagctttactttccgccattatacttgg 212  Q
      ||||||||||||||||| | || || |||||||| |||||||||   ||| |||| || |||||| | |   |||||||||| || |||||||||||    
T  33627639 agttacagggatcaacattattgctttctattcacctaacctctttagatctttggggttgggacacaatgcttctttactttctgcgattatacttgg 33627737  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 33622521 - 33622658
Alignment:
Q  22 aaatcagtgcaacaagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggcatttgcaatcccgtttttccaacagcttacag 121  Q
    ||||||||  || |||| ||||||||||||||| ||||||| || |||| ||||||  |  | ||||| || |||||| ||| |||| ||||  ||||||    
T  33622521 aaatcagtaaaaaaagatccctttaaaaccatactaaaaagagagtatcaacctcagattttaatggccttagcaatctcgtgtttcgaacatgttacag 33622620  T
Q  122 ggatcaacattgtagccttttattcacccaacctcttt 159  Q
    ||| ||||||||| || || |||||||| |||||||||    
T  33622621 ggaacaacattgttgctttctattcacctaacctcttt 33622658  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 33562979 - 33563045
Alignment:
Q  65 aatatcgacctcacttggtgatggcatttgcaatcccgtttttccaacagcttacagggatcaacat 131  Q
    |||||||||||||||||||||| ||| |||| || ||| |||| ||||| || || |||||||||||    
T  33562979 aatatcgacctcacttggtgatagcagttgctattccgctttttcaacaactcacggggatcaacat 33563045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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