View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12519_low_1 (Length: 591)

Name: NF12519_low_1
Description: NF12519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12519_low_1
NF12519_low_1
[»] chr2 (36 HSPs)
chr2 (17-583)||(43808171-43808737)
chr2 (347-436)||(33267572-33267661)
chr2 (339-422)||(11307229-11307312)
chr2 (347-422)||(18962108-18962183)
chr2 (347-422)||(9478224-9478299)
chr2 (347-422)||(17952771-17952846)
chr2 (352-422)||(28902007-28902077)
chr2 (319-416)||(15171147-15171244)
chr2 (347-419)||(3102618-3102690)
chr2 (347-435)||(14209202-14209290)
chr2 (467-532)||(43456649-43456714)
chr2 (338-422)||(29430672-29430755)
chr2 (338-378)||(44606202-44606242)
chr2 (376-426)||(3458610-3458661)
chr2 (316-422)||(28803576-28803682)
chr2 (467-526)||(29430821-29430880)
chr2 (470-512)||(1625967-1626009)
chr2 (338-419)||(3423841-3423922)
chr2 (350-407)||(5998787-5998844)
chr2 (347-420)||(37053519-37053592)
chr2 (350-388)||(42826314-42826352)
chr2 (389-422)||(1160814-1160847)
chr2 (464-501)||(18525210-18525247)
chr2 (390-435)||(19243577-19243622)
chr2 (347-427)||(34339048-34339128)
chr2 (361-422)||(40722547-40722606)
chr2 (347-380)||(44458450-44458483)
chr2 (467-524)||(44606060-44606117)
chr2 (467-507)||(1741999-1742039)
chr2 (349-420)||(3673734-3673805)
chr2 (378-422)||(5043630-5043674)
chr2 (354-401)||(5045248-5045295)
chr2 (349-377)||(13864577-13864605)
chr2 (390-422)||(31740029-31740061)
chr2 (390-422)||(37292417-37292449)
chr2 (337-377)||(43965245-43965285)
[»] chr5 (30 HSPs)
chr5 (337-422)||(35135732-35135817)
chr5 (347-422)||(32059659-32059733)
chr5 (352-436)||(32197657-32197741)
chr5 (322-419)||(20982208-20982305)
chr5 (319-377)||(26516195-26516253)
chr5 (347-436)||(11684348-11684435)
chr5 (347-415)||(29014681-29014749)
chr5 (347-422)||(36539671-36539746)
chr5 (349-420)||(37063146-37063217)
chr5 (353-420)||(41277422-41277490)
chr5 (337-388)||(4991048-4991098)
chr5 (481-532)||(7550460-7550511)
chr5 (472-507)||(8090004-8090039)
chr5 (467-521)||(11297149-11297203)
chr5 (474-524)||(12407680-12407730)
chr5 (347-413)||(29365544-29365609)
chr5 (465-515)||(37611174-37611224)
chr5 (465-515)||(37787904-37787954)
chr5 (347-419)||(6733966-6734037)
chr5 (348-416)||(7096203-7096271)
chr5 (319-388)||(33961600-33961668)
chr5 (465-538)||(40534260-40534333)
chr5 (465-525)||(4619768-4619828)
chr5 (317-377)||(6738522-6738582)
chr5 (390-422)||(8158371-8158403)
chr5 (353-405)||(8571302-8571353)
chr5 (467-507)||(10152397-10152437)
chr5 (465-497)||(11406255-11406287)
chr5 (468-512)||(12242672-12242716)
chr5 (467-507)||(14980572-14980612)
[»] chr1 (29 HSPs)
chr1 (347-420)||(45107548-45107620)
chr1 (358-422)||(48830146-48830210)
chr1 (471-526)||(4033965-4034020)
chr1 (339-420)||(30815707-30815789)
chr1 (355-420)||(1232964-1233029)
chr1 (339-423)||(870962-871046)
chr1 (469-522)||(16980868-16980921)
chr1 (355-411)||(1730825-1730881)
chr1 (342-413)||(48282053-48282125)
chr1 (467-514)||(49692012-49692059)
chr1 (347-401)||(3244829-3244883)
chr1 (337-422)||(4200144-4200229)
chr1 (466-524)||(4757400-4757458)
chr1 (470-512)||(6557039-6557081)
chr1 (347-412)||(33339500-33339565)
chr1 (467-524)||(38867783-38867838)
chr1 (322-388)||(46504322-46504387)
chr1 (341-422)||(52286597-52286678)
chr1 (335-422)||(4256112-4256200)
chr1 (467-504)||(6262801-6262838)
chr1 (483-520)||(7707269-7707306)
chr1 (347-422)||(28467377-28467454)
chr1 (466-507)||(28467495-28467536)
chr1 (467-524)||(34536221-34536278)
chr1 (353-385)||(7357455-7357487)
chr1 (390-422)||(9656618-9656650)
chr1 (355-422)||(15360827-15360894)
chr1 (319-422)||(17420100-17420203)
chr1 (337-432)||(23895251-23895346)
[»] scaffold0590 (1 HSPs)
scaffold0590 (347-421)||(1145-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (347-421)||(2756-2830)
[»] chr4 (32 HSPs)
chr4 (319-425)||(22684583-22684689)
chr4 (319-420)||(54414846-54414950)
chr4 (347-414)||(28581988-28582054)
chr4 (319-401)||(8422928-8423010)
chr4 (472-526)||(18628501-18628555)
chr4 (467-521)||(27123305-27123359)
chr4 (467-524)||(2996636-2996693)
chr4 (337-422)||(44319865-44319949)
chr4 (361-420)||(437504-437564)
chr4 (337-420)||(24193500-24193583)
chr4 (467-506)||(27725277-27725316)
chr4 (469-524)||(33534119-33534174)
chr4 (353-419)||(42321952-42322018)
chr4 (347-422)||(54325107-54325182)
chr4 (347-422)||(55437356-55437429)
chr4 (347-401)||(32920491-32920543)
chr4 (349-414)||(47970245-47970310)
chr4 (465-514)||(1554968-1555017)
chr4 (350-422)||(4071811-4071882)
chr4 (390-419)||(5219573-5219602)
chr4 (347-420)||(23819015-23819087)
chr4 (347-419)||(36734818-36734890)
chr4 (342-422)||(49219059-49219139)
chr4 (472-505)||(52428733-52428766)
chr4 (348-401)||(54986348-54986400)
chr4 (380-416)||(12162911-12162947)
chr4 (347-422)||(21157693-21157768)
chr4 (319-422)||(30024597-30024700)
chr4 (349-421)||(32724046-32724118)
chr4 (345-377)||(52645623-52645655)
chr4 (319-371)||(55599063-55599115)
chr4 (458-514)||(56007734-56007789)
[»] chr8 (24 HSPs)
chr8 (467-525)||(21130675-21130733)
chr8 (338-422)||(34788497-34788581)
chr8 (339-420)||(2699223-2699304)
chr8 (337-422)||(28769409-28769494)
chr8 (354-418)||(4558730-4558794)
chr8 (347-420)||(10722556-10722629)
chr8 (361-436)||(26215435-26215510)
chr8 (354-405)||(2595084-2595134)
chr8 (368-422)||(42237492-42237547)
chr8 (467-521)||(9700064-9700118)
chr8 (467-521)||(14949929-14949983)
chr8 (347-421)||(26717182-26717254)
chr8 (319-377)||(31875674-31875732)
chr8 (322-422)||(3645886-3645986)
chr8 (338-422)||(11056737-11056821)
chr8 (472-505)||(27412851-27412884)
chr8 (349-424)||(29262942-29263016)
chr8 (465-514)||(30191101-30191150)
chr8 (347-379)||(6918956-6918988)
chr8 (482-538)||(10923674-10923730)
chr8 (466-526)||(11376765-11376825)
chr8 (347-379)||(11952478-11952510)
chr8 (470-522)||(31915245-31915297)
chr8 (347-426)||(40357824-40357903)
[»] chr7 (26 HSPs)
chr7 (339-422)||(40428471-40428555)
chr7 (347-422)||(49060465-49060540)
chr7 (467-526)||(3500913-3500974)
chr7 (466-532)||(22387838-22387904)
chr7 (469-503)||(31149705-31149739)
chr7 (469-503)||(31167997-31168031)
chr7 (347-420)||(45593791-45593864)
chr7 (319-422)||(26935620-26935723)
chr7 (337-377)||(27389298-27389338)
chr7 (347-422)||(36370595-36370669)
chr7 (482-526)||(44151424-44151468)
chr7 (347-395)||(45078218-45078265)
chr7 (347-417)||(47004012-47004082)
chr7 (319-377)||(28844383-28844441)
chr7 (467-512)||(44808221-44808266)
chr7 (337-377)||(1431423-1431463)
chr7 (466-514)||(8094368-8094416)
chr7 (347-422)||(22759111-22759186)
chr7 (351-422)||(27481364-27481435)
chr7 (337-373)||(27517969-27518005)
chr7 (340-419)||(30496622-30496701)
chr7 (337-420)||(31341109-31341192)
chr7 (341-420)||(35536026-35536105)
chr7 (465-521)||(36537969-36538025)
chr7 (347-422)||(39551618-39551693)
chr7 (390-422)||(40689056-40689088)
[»] chr6 (28 HSPs)
chr6 (355-437)||(2034494-2034575)
chr6 (337-422)||(7351678-7351763)
chr6 (349-423)||(32513752-32513825)
chr6 (347-422)||(10452430-10452505)
chr6 (467-514)||(1669758-1669805)
chr6 (338-420)||(3217262-3217344)
chr6 (465-512)||(20368142-20368189)
chr6 (467-521)||(2460104-2460158)
chr6 (319-377)||(32975875-32975933)
chr6 (390-422)||(1402964-1402996)
chr6 (347-422)||(10032496-10032571)
chr6 (465-521)||(27693392-27693448)
chr6 (319-421)||(9833168-9833270)
chr6 (337-404)||(24332858-24332924)
chr6 (467-526)||(32577934-32577993)
chr6 (337-422)||(22742281-22742366)
chr6 (350-388)||(30817671-30817709)
chr6 (467-521)||(30863309-30863363)
chr6 (468-522)||(30865547-30865601)
chr6 (319-377)||(33068676-33068734)
chr6 (349-424)||(27693507-27693581)
chr6 (469-526)||(27857423-27857480)
chr6 (467-520)||(32917260-32917313)
chr6 (351-407)||(33911366-33911422)
chr6 (376-419)||(2027479-2027523)
chr6 (347-415)||(8010282-8010349)
chr6 (376-419)||(28660833-28660877)
chr6 (477-521)||(31668430-31668474)
[»] chr3 (30 HSPs)
chr3 (466-514)||(2175809-2175857)
chr3 (345-420)||(25459696-25459770)
chr3 (347-416)||(16790432-16790501)
chr3 (469-514)||(25182947-25182992)
chr3 (347-422)||(25183058-25183134)
chr3 (337-378)||(28842971-28843012)
chr3 (347-418)||(38462206-38462277)
chr3 (347-379)||(49772781-49772813)
chr3 (467-514)||(1810040-1810087)
chr3 (338-420)||(22232742-22232824)
chr3 (340-422)||(28779274-28779356)
chr3 (347-422)||(32703063-32703138)
chr3 (468-507)||(40880915-40880954)
chr3 (477-524)||(47584523-47584570)
chr3 (466-521)||(50015948-50016003)
chr3 (319-416)||(12985399-12985497)
chr3 (465-507)||(21574551-21574593)
chr3 (473-511)||(47132063-47132101)
chr3 (465-538)||(50004713-50004787)
chr3 (362-422)||(1395611-1395671)
chr3 (469-514)||(14548681-14548726)
chr3 (319-419)||(33965564-33965665)
chr3 (465-521)||(2304224-2304280)
chr3 (337-401)||(9279417-9279481)
chr3 (367-422)||(37689454-37689509)
chr3 (347-422)||(41028921-41028996)
chr3 (363-426)||(42809242-42809305)
chr3 (347-422)||(43116498-43116573)
chr3 (333-416)||(44284134-44284217)
chr3 (474-514)||(50211805-50211845)
[»] scaffold0153 (2 HSPs)
scaffold0153 (390-422)||(6568-6600)
scaffold0153 (390-422)||(13588-13620)
[»] scaffold0024 (1 HSPs)
scaffold0024 (361-436)||(21334-21409)


Alignment Details
Target: chr2 (Bit Score: 555; Significance: 0; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 17 - 583
Target Start/End: Original strand, 43808171 - 43808737
Alignment:
Q  17 ataattaatatgcaggagtggctctgtagtagcaaagtatggtgacaagagtgtgtactttgatttggaggatattggcaacactacaggtcagtgggat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43808171 ataattaatatgcaggagtggctctgtagtagcaaagtatggtgacaagagtgtgtactttgatttggaggatattggcaacactacaggtcagtgggat 43808270  T
Q  117 ttgtacggctcagatgcaccctcaccctacaaccctcttcaggtttgtctactggattttagatcactttactttgtttttgtgcattcacttggtagta 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43808271 ttgtacggctcagatgcaccctcaccctacaaccctcttcaggtttgtctactggattttagatcactttactttgtttttgtgcattcactttgtagta 43808370  T
Q  217 agtaagtagtgaacataaagtgatttttatatgtgtctaggcttaggaaggccatagattttgttgatctaatctaacagattatttgttggataaaata 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43808371 agtaagtagtgaacataaagtgatttttatatgtgtctaggcttaggaaggccatagattttgttgatctaatctaacagattatttgttggataaaata 43808470  T
Q  317 gtttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcata 416  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43808471 gtttaattaagtgtttatagcataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcata 43808570  T
Q  417 taagctgtttctataagctaataagctgaaaataacttatggacaatcgaacatgtcataagttattttcataagctctctcaaatagtcttacaagtat 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43808571 taagctgtttctataagctaataagctgaaaataacttatggacaatcgaacatgtcataagttattttcataagctctctcaaatagtcttacaagtat 43808670  T
Q  517 ttatgtcagtgaataaagtcaatctaaacatgttctcattataagttcactttaagtctcctttgct 583  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43808671 ttatgtcagtgaataaagtcaatctaaacatgttctcattataagttcactttaagtctcctttgct 43808737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 347 - 436
Target Start/End: Complemental strand, 33267661 - 33267572
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataacaaaca-taaaataaagttaaactattttcatataagctgtttctataagcta 436  Q
    ||||||||||||| |||||||||| |||||| | |||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||    
T  33267661 tatcatataagtgcttatgtataatctatttct-ataacaaacagtaaaataaagttaaactgttttcatataagctgtttttataagcta 33267572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 339 - 422
Target Start/End: Original strand, 11307229 - 11307312
Alignment:
Q  339 taagcgcgtatcatataagtgtttatgtataagctattttttat-aacaaacataaaataaagttaaactattttcatataagct 422  Q
    ||||||| ||||||| ||||||| |||||||||||||||||| | |||||| ||||| |||||| |||||||||||||| |||||    
T  11307229 taagcgcttatcataaaagtgtt-atgtataagctatttttttttaacaaagataaagtaaagtcaaactattttcataaaagct 11307312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 18962183 - 18962108
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 422  Q
    |||||| |||||| |||||||| |||||||||| ||||||||  |||||||||||||||||| ||||||||||||||    
T  18962183 tatcatgtaagtgcttatgtattagctattttt-ataacaaaagataaaataaagttaaactgttttcatataagct 18962108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 422
Target Start/End: Original strand, 9478224 - 9478299
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataagct 422  Q
    |||||||||||||||||||||||||||| ||| |||||||  | |||||||||| | ||| ||||||||||||||||    
T  9478224 tatcatataagtgtttatgtataagcta-tttctataacagtagataaaataaactcaaaatattttcatataagct 9478299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 17952846 - 17952771
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 422  Q
    ||||||||||| | |||| |||||||||||| | ||||||||  |||||||||||| ||||||||||||||||||||    
T  17952846 tatcatataagagcttatatataagctatttct-ataacaaaagataaaataaagtcaaactattttcatataagct 17952771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 352 - 422
Target Start/End: Original strand, 28902007 - 28902077
Alignment:
Q  352 tataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataagct 422  Q
    |||||||| |||||||||||||| ||||||||||| ||  ||||||||| ||||||| ||||||||||||||    
T  28902007 tataagtgcttatgtataagcta-tttttataacataagttaaaataaaattaaactgttttcatataagct 28902077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 416
Target Start/End: Original strand, 15171147 - 15171244
Alignment:
Q  319 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcata 416  Q
    ||||||||||||| ||| ||||||| |||||  |||||||||||||||||||| | |||| ||||||| || ||||| |||||| ||| | ||||||||    
T  15171147 ttaattaagtgtttatagcataagctcgtattttataagtgtttatgtataag-ttttttctataacagaagataaattaaagtcaaaatgttttcata 15171244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 347 - 419
Target Start/End: Original strand, 3102618 - 3102690
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataa 419  Q
    |||||||||| || |||||||||||||| |||||||| | ||| |||||||||||| |||||||||| ||||||    
T  3102618 tatcatataactgcttatgtataagcta-tttttatagcaaaatataaaataaagtcaaactatttttatataa 3102690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 347 - 435
Target Start/End: Original strand, 14209202 - 14209290
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagctgtttctataagct 435  Q
    |||||||||||||||| ||| ||||||||||   ||||||||  |||||||||| | ||||| |||||||||||||| |||| |||||||    
T  14209202 tatcatataagtgtttctgtctaagctatttca-ataacaaaagataaaataaattcaaactgttttcatataagctatttccataagct 14209290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 43456714 - 43456649
Alignment:
Q  467 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataa 532  Q
    ||||||||| |||| |||||| ||||||| ||||| |||||||||||| ||||||| ||| |||||    
T  43456714 acatgtcatgagttgttttcacaagctctttcaaacagtcttacaagtgtttatgtgagtaaataa 43456649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 422
Target Start/End: Original strand, 29430672 - 29430755
Alignment:
Q  338 ataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 422  Q
    |||||||  ||||||| ||| |||||||||||||||| ||| |||||||||  | ||||||||| ||||| ||||| ||||||||    
T  29430672 ataagcgtttatcatacaagggtttatgtataagcta-tttctataacaaaagttaaataaagtcaaactgttttcttataagct 29430755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 378
Target Start/End: Complemental strand, 44606242 - 44606202
Alignment:
Q  338 ataagcgcgtatcatataagtgtttatgtataagctatttt 378  Q
    |||||||| ||| ||||||||||||||||||||||||||||    
T  44606242 ataagcgcttattatataagtgtttatgtataagctatttt 44606202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 426
Target Start/End: Original strand, 3458610 - 3458661
Alignment:
Q  376 tttttataacaaac-ataaaataaagttaaactattttcatataagctgttt 426  Q
    |||||||||||||  |||||||||||| ||||| ||||||||||||||||||    
T  3458610 tttttataacaaaagataaaataaagtcaaacttttttcatataagctgttt 3458661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 422
Target Start/End: Complemental strand, 28803682 - 28803576
Alignment:
Q  316 agtttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttca 414  Q
    |||||||||||||||| ||  |||||  || ||||||||||||| |||| |||||| || |||  ||||| ||| |||||||||||| |||||  |||||    
T  28803682 agtttaattaagtgtttatggcataaatgcttatcatataagtgcttatatataagtta-tttcgataacaaaagataaaataaagtcaaactgatttca 28803584  T
Q  415 tataagct 422  Q
    ||||||||    
T  28803583 tataagct 28803576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 526
Target Start/End: Original strand, 29430821 - 29430880
Alignment:
Q  467 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 526  Q
    |||||||||||| |||||||||||| |||  |||||||||  |||||| |||||||||||    
T  29430821 acatgtcataagctattttcataagttcttccaaatagtcccacaagtgtttatgtcagt 29430880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 512
Target Start/End: Original strand, 1625967 - 1626009
Alignment:
Q  470 tgtcataagttattttcataagctctctcaaatagtcttacaa 512  Q
    ||||||||| || ||||||||| ||||||||||||||||||||    
T  1625967 tgtcataagctactttcataagttctctcaaatagtcttacaa 1626009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 419
Target Start/End: Complemental strand, 3423922 - 3423841
Alignment:
Q  338 ataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataa 419  Q
    ||||| || ||||||| ||||||||||||||||| |||||||  || ||||  |||||||||||| ||| |||||||||||||    
T  3423922 ataagtgcttatcatacaagtgtttatgtataagttatttttg-taccaaaagataaaataaagtcaaattattttcatataa 3423841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 407
Target Start/End: Complemental strand, 5998844 - 5998787
Alignment:
Q  350 catataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaact 407  Q
    ||||||| ||||||| |||||||||| ||||||||| ||| ||||||||||||||||||    
T  5998844 catataattgtttatatataagctat-ttttataacaaaagataaaataaagttaaact 5998787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 420
Target Start/End: Original strand, 37053519 - 37053592
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataag 420  Q
    ||||||||||||| |||||||||  |||||| | |||||| || |||||||||||| ||||| ||||||||||||    
T  37053519 tatcatataagtgcttatgtatagactatttct-ataacagaaaataaaataaagtcaaactgttttcatataag 37053592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 388
Target Start/End: Original strand, 42826314 - 42826352
Alignment:
Q  350 catataagtgtttatgtataagctattttttataacaaa 388  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  42826314 catataagtgcttatatataagctattttttataacaaa 42826352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 422
Target Start/End: Complemental strand, 1160847 - 1160814
Alignment:
Q  389 cataaaataaagttaaactattttcatataagct 422  Q
    ||||||||||||| ||||||||||||||||||||    
T  1160847 cataaaataaagtcaaactattttcatataagct 1160814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 501
Target Start/End: Complemental strand, 18525247 - 18525210
Alignment:
Q  464 cgaacatgtcataagttattttcataagctctctcaaa 501  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  18525247 cgaatatgtcataagctattttcataagctctctcaaa 18525210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 435
Target Start/End: Original strand, 19243577 - 19243622
Alignment:
Q  390 ataaaataaagttaaactattttcatataagctgtttctataagct 435  Q
    |||||||||| ||||| | |||| ||||||||||||||||||||||    
T  19243577 ataaaataaatttaaattgttttgatataagctgtttctataagct 19243622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 427
Target Start/End: Original strand, 34339048 - 34339128
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagctgtttc 427  Q
    ||||||||||||| |||||||||| || |||| |||| | ||| |||||||||||| | ||| ||||| |||||||||||||    
T  34339048 tatcatataagtgcttatgtataaact-ttttctatagctaaagataaaataaagtcagactgttttcgtataagctgtttc 34339128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 422
Target Start/End: Complemental strand, 40722606 - 40722547
Alignment:
Q  361 ttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 422  Q
    ||||| ||||||| |||||||||||||| ||||||||||||  |||| ||||||||||||||    
T  40722606 ttatgcataagct-ttttttataacaaa-ataaaataaagtcgaactgttttcatataagct 40722547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 380
Target Start/End: Complemental strand, 44458483 - 44458450
Alignment:
Q  347 tatcatataagtgtttatgtataagctatttttt 380  Q
    |||||||||||| |||||||||||||||||||||    
T  44458483 tatcatataagtatttatgtataagctatttttt 44458450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 524
Target Start/End: Complemental strand, 44606117 - 44606060
Alignment:
Q  467 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 524  Q
    |||||||||||||| |||||||||| |||  |||| |||| |||||||| ||||||||    
T  44606117 acatgtcataagttgttttcataagttcttccaaacagtcgtacaagtacttatgtca 44606060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 507
Target Start/End: Complemental strand, 1742039 - 1741999
Alignment:
Q  467 acatgtcataagttattttcataagctctctcaaatagtct 507  Q
    |||||||||||||| ||| ||||||||||| ||||||||||    
T  1742039 acatgtcataagttgtttccataagctctcccaaatagtct 1741999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 420
Target Start/End: Original strand, 3673734 - 3673805
Alignment:
Q  349 tcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataag 420  Q
    ||||||||||| |||||||| || ||||| | ||||||||  |||||||||||||||| | ||||||||||||    
T  3673734 tcatataagtgcttatgtattagttatttct-ataacaaaatataaaataaagttaaattgttttcatataag 3673805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 422
Target Start/End: Complemental strand, 5043674 - 5043630
Alignment:
Q  378 tttataacaaacataaaataaagttaaactattttcatataagct 422  Q
    ||||||| ||| |||||||||||| ||||| ||||||||||||||    
T  5043674 tttataagaaagataaaataaagtcaaactgttttcatataagct 5043630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 5045295 - 5045248
Alignment:
Q  354 taagtgtttatgtataagctattttttataac-aaacataaaataaagt 401  Q
    |||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  5045295 taagtgtttatgtataagctat-ttttataacaaaagataaaataaagt 5045248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 377
Target Start/End: Original strand, 13864577 - 13864605
Alignment:
Q  349 tcatataagtgtttatgtataagctattt 377  Q
    |||||||||||||||||||||||||||||    
T  13864577 tcatataagtgtttatgtataagctattt 13864605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 31740061 - 31740029
Alignment:
Q  390 ataaaataaagttaaactattttcatataagct 422  Q
    |||||||||||| ||||||||||||||||||||    
T  31740061 ataaaataaagtcaaactattttcatataagct 31740029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 37292449 - 37292417
Alignment:
Q  390 ataaaataaagttaaactattttcatataagct 422  Q
    |||||||||||| ||||||||||||||||||||    
T  37292449 ataaaataaagtaaaactattttcatataagct 37292417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 43965285 - 43965245
Alignment:
Q  337 cataagcgcgtatcatataagtgtttatgtataagctattt 377  Q
    ||||||| | ||||||||||||||||||| |||||||||||    
T  43965285 cataagcacttatcatataagtgtttatgaataagctattt 43965245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 337 - 422
Target Start/End: Complemental strand, 35135817 - 35135732
Alignment:
Q  337 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 422  Q
    |||||| || || |||||||||||||||||||||| ||||| | ||||||||  |||||||||||| ||||||||||||||||||||    
T  35135817 cataagtgcttaacatataagtgtttatgtataagatatttct-ataacaaaagataaaataaagtcaaactattttcatataagct 35135732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 32059733 - 32059659
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 422  Q
    ||||||||||||| ||||||||||||| |||||  |||| || |||||||||||| ||||| ||||||||||||||    
T  32059733 tatcatataagtgcttatgtataagctgtttttg-taactaagataaaataaagtcaaactgttttcatataagct 32059659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 352 - 436
Target Start/End: Original strand, 32197657 - 32197741
Alignment:
Q  352 tataagtgtttatgtataagctattttttataacaaacataaa-ataaagttaaactattttcatataagctgtttctataagcta 436  Q
    |||||||||||| |||||| |||||| || ||||||| ||  | ||||||| ||||||||||||||||||||||||| ||||||||    
T  32197657 tataagtgtttacgtataaactatttatt-taacaaaaatttatataaagtcaaactattttcatataagctgtttccataagcta 32197741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 419
Target Start/End: Complemental strand, 20982305 - 20982208
Alignment:
Q  322 attaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataa 419  Q
    |||||||| | ||| |||||| || ||||||||||||| |||||||||||||| ||| |||||||||  |||||||||||| || |  |||||||||||    
T  20982305 attaagtgcttatagcataagtgcttatcatataagtgcttatgtataagcta-tttctataacaaaggataaaataaagtcaacccgttttcatataa 20982208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 377
Target Start/End: Original strand, 26516195 - 26516253
Alignment:
Q  319 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattt 377  Q
    ||||||||| | | ||| ||||||||| ||||||||||||| |||||||||||||||||    
T  26516195 ttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctattt 26516253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 347 - 436
Target Start/End: Original strand, 11684348 - 11684435
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagctgtttctataagcta 436  Q
    ||||||||||||| | |||||||||||| ||||||||||||| ||| || | ||| ||||| |||||||||||||| |||  ||||||||    
T  11684348 tatcatataagtgctaatgtataagcta-tttttataacaaa-atataaaatagtgaaactgttttcatataagctattttcataagcta 11684435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 29014681 - 29014749
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcat 415  Q
    ||||||||||||||| |||||||||||| ||||||| | |||| ||||||| |||| |||||||||||||    
T  29014681 tatcatataagtgttcatgtataagcta-tttttatgataaacgataaaatcaagtcaaactattttcat 29014749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 422
Target Start/End: Original strand, 36539671 - 36539746
Alignment:
Q  347 tatcatataagtgtttatgtataagctattt-tttataacaaacataaaataaagttaaactattttcatataagct 422  Q
    ||||||||||||| |||||| |||||||||| ||||| | ||| |||||||||||| || || ||||||||||||||    
T  36539671 tatcatataagtgcttatgtgtaagctatttgtttatca-aaagataaaataaagtcaacctgttttcatataagct 36539746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 420
Target Start/End: Complemental strand, 37063217 - 37063146
Alignment:
Q  349 tcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataag 420  Q
    |||||||| || |||||||||| |||||| | ||||||||  |||||||||||| ||||||||||||||||||    
T  37063217 tcatataaatgcttatgtataaactatttct-ataacaaaagataaaataaagtcaaactattttcatataag 37063146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 420
Target Start/End: Complemental strand, 41277490 - 41277422
Alignment:
Q  353 ataagtgtttatgtataagctattttttataa-caaacataaaataaagttaaactattttcatataag 420  Q
    ||||||| ||||||| ||||| |||||| ||| |||| |||||||||||| ||||| ||||||||||||    
T  41277490 ataagtgcttatgtaaaagcttttttttgtaatcaaagataaaataaagtcaaactgttttcatataag 41277422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 388
Target Start/End: Complemental strand, 4991098 - 4991048
Alignment:
Q  337 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaa 388  Q
    ||||||||  |||||||||||||||| |||||||||||| ||||||||||||    
T  4991098 cataagcgattatcatataagtgtttgtgtataagctat-ttttataacaaa 4991048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 532
Target Start/End: Complemental strand, 7550511 - 7550460
Alignment:
Q  481 attttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataa 532  Q
    |||| |||||||||||||||| ||||| ||||||| ||||||||||| ||||    
T  7550511 atttccataagctctctcaaagagtctcacaagtaattatgtcagtggataa 7550460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 507
Target Start/End: Original strand, 8090004 - 8090039
Alignment:
Q  472 tcataagttattttcataagctctctcaaatagtct 507  Q
    ||||||||| ||||||||||||||||||||||||||    
T  8090004 tcataagttgttttcataagctctctcaaatagtct 8090039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 521
Target Start/End: Complemental strand, 11297203 - 11297149
Alignment:
Q  467 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 521  Q
    ||||||| |||||| ||| |||||||||| ||||| |||||||||||| ||||||    
T  11297203 acatgtcttaagttgtttccataagctctttcaaacagtcttacaagtgtttatg 11297149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 524
Target Start/End: Complemental strand, 12407730 - 12407680
Alignment:
Q  474 ataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 524  Q
    |||||| |||||||||||||||||||||  |||| |||||| |||||||||    
T  12407730 ataagtcattttcataagctctctcaaaccgtctcacaagtgtttatgtca 12407680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 413
Target Start/End: Original strand, 29365544 - 29365609
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttc 413  Q
    ||||||||||||| | |||||||||||| ||||||| | ||| |||| || ||||||||||||||||    
T  29365544 tatcatataagtgctcatgtataagcta-tttttatgataaaaataacatcaagttaaactattttc 29365609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 515
Target Start/End: Complemental strand, 37611224 - 37611174
Alignment:
Q  465 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagta 515  Q
    |||||||||| ||||| |||||||||||||||||||| | ||| |||||||    
T  37611224 gaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagta 37611174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 515
Target Start/End: Complemental strand, 37787954 - 37787904
Alignment:
Q  465 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagta 515  Q
    |||||||||| ||||| |||||||||||||||||||| | ||| |||||||    
T  37787954 gaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagta 37787904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 419
Target Start/End: Complemental strand, 6734037 - 6733966
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataa 419  Q
    ||||||||||||||||||| |||| ||| |||||||||| ||| ||||||||||| |||| | |||||||||||    
T  6734037 tatcatataagtgtttatgcataatcta-tttttataacgaaagataaaataaag-taaattgttttcatataa 6733966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 416
Target Start/End: Complemental strand, 7096271 - 7096203
Alignment:
Q  348 atcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcata 416  Q
    |||||| ||||| |||||||||||||| ||| |||||| ||| |||||||||||| |||| |||||||||    
T  7096271 atcatacaagtgcttatgtataagcta-tttctataacaaaagataaaataaagtcaaaccattttcata 7096203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 388
Target Start/End: Original strand, 33961600 - 33961668
Alignment:
Q  319 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaa 388  Q
    ||||||||||||| |||  |||||| | |||||||||||||||| |||||||| ||  ||||||||||||    
T  33961600 ttaattaagtgtttatagtataagcacttatcatataagtgtttttgtataaggta-cttttataacaaa 33961668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 538
Target Start/End: Original strand, 40534260 - 40534333
Alignment:
Q  465 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataaagtcaa 538  Q
    |||||||||||||| || || |||||||||||  ||| ||| | |||||| ||||||||||| |||||| ||||    
T  40534260 gaacatgtcataagctacttccataagctctcctaaacagtatcacaagtgtttatgtcagtaaataaactcaa 40534333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 525
Target Start/End: Original strand, 4619768 - 4619828
Alignment:
Q  465 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcag 525  Q
    ||||||||||| |||| ||||||||||||||| |||| ||| || |||||  |||||||||    
T  4619768 gaacatgtcattagttgttttcataagctctcccaaacagtgttgcaagtgcttatgtcag 4619828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 377
Target Start/End: Complemental strand, 6738582 - 6738522
Alignment:
Q  317 gtttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattt 377  Q
    ||||||||||| ||| ||| ||||| | | ||||||||||||  |||||||||||||||||    
T  6738582 gtttaattaagagtttatagcataaacacttatcatataagtacttatgtataagctattt 6738522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 8158403 - 8158371
Alignment:
Q  390 ataaaataaagttaaactattttcatataagct 422  Q
    |||||||||||||||| ||||||||||||||||    
T  8158403 ataaaataaagttaaattattttcatataagct 8158371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 353 - 405
Target Start/End: Original strand, 8571302 - 8571353
Alignment:
Q  353 ataagtgtttatgtataagctattttttataacaaacataaaataaagttaaa 405  Q
    ||||||||||||||||| | |||||| ||||||||| | ||||||||||||||    
T  8571302 ataagtgtttatgtatatgatatttt-tataacaaagaaaaaataaagttaaa 8571353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 507
Target Start/End: Original strand, 10152397 - 10152437
Alignment:
Q  467 acatgtcataagttattttcataagctctctcaaatagtct 507  Q
    |||||||||||||| |||||||||||||||  |||||||||    
T  10152397 acatgtcataagttgttttcataagctctccaaaatagtct 10152437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 497
Target Start/End: Original strand, 11406255 - 11406287
Alignment:
Q  465 gaacatgtcataagttattttcataagctctct 497  Q
    |||||| ||||||||||||||||||||||||||    
T  11406255 gaacatatcataagttattttcataagctctct 11406287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 512
Target Start/End: Complemental strand, 12242716 - 12242672
Alignment:
Q  468 catgtcataagttattttcataagctctctcaaatagtcttacaa 512  Q
    ||||||||||||| ||| |||||||||||||||||| ||| ||||    
T  12242716 catgtcataagttttttccataagctctctcaaataatctcacaa 12242672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 507
Target Start/End: Original strand, 14980572 - 14980612
Alignment:
Q  467 acatgtcataagttattttcataagctctctcaaatagtct 507  Q
    ||||||||||||| ||||| ||||||||||||||| |||||    
T  14980572 acatgtcataagtcatttttataagctctctcaaacagtct 14980612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 347 - 420
Target Start/End: Original strand, 45107548 - 45107620
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataag 420  Q
    ||||||||||||| |||| |||||||||||| | |||| ||| |||||||||||| ||||||||||||||||||    
T  45107548 tatcatataagtgcttatctataagctatttct-ataagaaaaataaaataaagtcaaactattttcatataag 45107620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 358 - 422
Target Start/End: Complemental strand, 48830210 - 48830146
Alignment:
Q  358 tgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 422  Q
    |||||||||||||| ||||| |  || |||| |||||||||||| ||||||||||||||||||||    
T  48830210 tgtttatgtataagttatttctattaccaaagataaaataaagtcaaactattttcatataagct 48830146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 471 - 526
Target Start/End: Complemental strand, 4034020 - 4033965
Alignment:
Q  471 gtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 526  Q
    ||||||||||||||||||||||||||||||| | ||| |||||| |||||| ||||    
T  4034020 gtcataagttattttcataagctctctcaaacaatctcacaagtgtttatgccagt 4033965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 339 - 420
Target Start/End: Complemental strand, 30815789 - 30815707
Alignment:
Q  339 taagcgcgtatcatataagtg-tttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataag 420  Q
    ||||||| |||||||||| |  ||||||| |||||| |||| |||||||||  |||||||||||||||||||||||||||||||    
T  30815789 taagcgcttatcatataattactttatgtctaagct-ttttctataacaaaagataaaataaagttaaactattttcatataag 30815707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 420
Target Start/End: Complemental strand, 1233029 - 1232964
Alignment:
Q  355 aagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataag 420  Q
    ||||||||||| ||||||| ||||| |||||||| ||||||||||||||||| ||||||| ||||||    
T  1233029 aagtgtttatgcataagctgttttt-ataacaaaacataaaataaagttaaattattttcgtataag 1232964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 339 - 423
Target Start/End: Original strand, 870962 - 871046
Alignment:
Q  339 taagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagctg 423  Q
    ||||||| ||||||||||||| |||||||||| ||| |||||||||| ||| ||||||| |||| ||  | |||||||||||||||    
T  870962 taagcgcttatcatataagtgcttatgtataaacta-tttttataacaaaagataaaattaagtcaattttttttcatataagctg 871046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 469 - 522
Target Start/End: Original strand, 16980868 - 16980921
Alignment:
Q  469 atgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgt 522  Q
    ||||| |||||| ||| |||||||||||||||||||||| ||||||| ||||||    
T  16980868 atgtcgtaagttgtttccataagctctctcaaatagtctcacaagtacttatgt 16980921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 1730825 - 1730881
Alignment:
Q  355 aagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattt 411  Q
    ||||| ||||||||||||||||||||  | |||| |||||||||||| |||||||||    
T  1730825 aagtgcttatgtataagctatttttttaaccaaagataaaataaagtcaaactattt 1730881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 413
Target Start/End: Original strand, 48282053 - 48282125
Alignment:
Q  342 gcgcgtatcatataagtgtttatgtataagctattt-tttataacaaacataaaataaagttaaactattttc 413  Q
    |||| ||||||||||||| ||||||| ||||||||| | || || ||| |||||||||||| |||||||||||    
T  48282053 gcgcttatcatataagtgcttatgtaaaagctatttctataaaagaaagataaaataaagtcaaactattttc 48282125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 514
Target Start/End: Complemental strand, 49692059 - 49692012
Alignment:
Q  467 acatgtcataagttattttcataagctctctcaaatagtcttacaagt 514  Q
    |||||||||||| |||||||||||| ||||||||| ||||| ||||||    
T  49692059 acatgtcataagctattttcataagttctctcaaacagtctcacaagt 49692012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 401
Target Start/End: Original strand, 3244829 - 3244883
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagt 401  Q
    |||||| |||||| ||||||||||||||||| || ||  ||||||||||||||||    
T  3244829 tatcatgtaagtgcttatgtataagctatttcttgtacaaaacataaaataaagt 3244883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 422
Target Start/End: Original strand, 4200144 - 4200229
Alignment:
Q  337 cataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagct 422  Q
    ||||||| | |||||| ||||||||||| |||||| || |||||||||| ||| |||||||||||| ||  | ||||||||||||||    
T  4200144 cataagcacttatcatctaagtgtttatatataagtta-tttttataacaaaagataaaataaagtcaagttgttttcatataagct 4200229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 524
Target Start/End: Original strand, 4757400 - 4757458
Alignment:
Q  466 aacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 524  Q
    ||||||||||||||| |||||||||| |||  ||||| |||| |||||| |||||||||    
T  4757400 aacatgtcataagttgttttcataagttctgccaaatggtctcacaagtgtttatgtca 4757458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 512
Target Start/End: Original strand, 6557039 - 6557081
Alignment:
Q  470 tgtcataagttattttcataagctctctcaaatagtcttacaa 512  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||    
T  6557039 tgtcataagctattttcataagttctctcaaatagtctcacaa 6557081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 412
Target Start/End: Complemental strand, 33339565 - 33339500
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactatttt 412  Q
    ||||||||| |||||||||||||||||| ||| |||| | ||| ||||||| |||||||||||||||    
T  33339565 tatcatataggtgtttatgtataagcta-tttctataccaaaagataaaatgaagttaaactatttt 33339500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 524
Target Start/End: Complemental strand, 38867838 - 38867783
Alignment:
Q  467 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 524  Q
    |||| ||||||||||||| |||||||||||||||| ||||  |||||| |||||||||    
T  38867838 acatatcataagttatttccataagctctctcaaacagtc--acaagtgtttatgtca 38867783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 322 - 388
Target Start/End: Complemental strand, 46504387 - 46504322
Alignment:
Q  322 attaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaa 388  Q
    |||||||||| ||| ||||||| | |||||||||||||||| | ||||| ||| |||||||||||||    
T  46504387 attaagtgtttatagcataagctcttatcatataagtgtttgtctataaacta-tttttataacaaa 46504322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 422
Target Start/End: Original strand, 52286597 - 52286678
Alignment:
Q  341 agcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 422  Q
    ||||| ||||||||||| | ||||| ||||| ||||| | | ||||||  ||||||||||||||||| |||||||||||||||    
T  52286597 agcgcttatcatataagcgcttatgaataagatatttct-acaacaaaagataaaataaagttaaacaattttcatataagct 52286678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 422
Target Start/End: Complemental strand, 4256200 - 4256112
Alignment:
Q  335 accataagcgcgtatcat-ataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 422  Q
    |||||||| || |||||| ||| ||||||||||||||||||||| | | ||||||  ||| |||||||||||| ||||||| ||||||||    
T  4256200 accataagtgcttatcatgatacgtgtttatgtataagctatttct-acaacaaaagatacaataaagttaaattattttcgtataagct 4256112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 504
Target Start/End: Original strand, 6262801 - 6262838
Alignment:
Q  467 acatgtcataagttattttcataagctctctcaaatag 504  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  6262801 acatatcataagttattttcataagctctcccaaatag 6262838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 520
Target Start/End: Original strand, 7707269 - 7707306
Alignment:
Q  483 tttcataagctctctcaaatagtcttacaagtatttat 520  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  7707269 tttcataaactctctcaaataatcttacaagtatttat 7707306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 28467454 - 28467377
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttt-tataacaaac-ataaaataaagttaaactattttcatataagct 422  Q
    ||||||| | ||| |||||||||| |||||| | |||||||||  |||||||||||| ||| ||||||||||||||||    
T  28467454 tatcatacaggtgattatgtataacctatttgtgtataacaaaagataaaataaagtcaaattattttcatataagct 28467377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 507
Target Start/End: Original strand, 28467495 - 28467536
Alignment:
Q  466 aacatgtcataagttattttcataagctctctcaaatagtct 507  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||    
T  28467495 aacatgtcataagttatttccataatctctcccaaatagtct 28467536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 524
Target Start/End: Original strand, 34536221 - 34536278
Alignment:
Q  467 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 524  Q
    |||||||||||| | |||||||||||  ||||||| ||||| |||||| |||||||||    
T  34536221 acatgtcataagctgttttcataagccatctcaaacagtctcacaagtgtttatgtca 34536278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 353 - 385
Target Start/End: Original strand, 7357455 - 7357487
Alignment:
Q  353 ataagtgtttatgtataagctattttttataac 385  Q
    ||||| |||||||||||||||||||||||||||    
T  7357455 ataagcgtttatgtataagctattttttataac 7357487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 9656618 - 9656650
Alignment:
Q  390 ataaaataaagttaaactattttcatataagct 422  Q
    |||||||||||||||| ||||||||||||||||    
T  9656618 ataaaataaagttaaattattttcatataagct 9656650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 422
Target Start/End: Original strand, 15360827 - 15360894
Alignment:
Q  355 aagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 422  Q
    |||||||||||||| || ||||| | ||||||||  |||||||||||| ||||| ||||||||||||||    
T  15360827 aagtgtttatgtattagttatttct-ataacaaaagataaaataaagtcaaactgttttcatataagct 15360894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 422
Target Start/End: Original strand, 17420100 - 17420203
Alignment:
Q  319 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataa-caaacataaaataaagttaaactattttcatat 417  Q
    ||||||||||| | |||  |||||||| || || ||||||  |||||||||| ||| |||||||||  ||| ||||||||||||  ||| ||||||||||    
T  17420100 ttaattaagtgattatagtataagcgcttagcacataagtacttatgtataaacta-tttttataagaaaagataaaataaagtcgaacaattttcatat 17420198  T
Q  418 aagct 422  Q
    |||||    
T  17420199 aagct 17420203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 337 - 432
Target Start/End: Original strand, 23895251 - 23895346
Alignment:
Q  337 cataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagctgtttctataa 432  Q
    ||||||| | ||||||||||||  |||||||||||||| ||| |||||| ||| |||||||||| | ||||| || ||||||| ||| ||| |||||    
T  23895251 cataagcccttatcatataagttattatgtataagcta-tttctataacaaaagataaaataaattcaaactgttctcatatatgctatttttataa 23895346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 421
Target Start/End: Complemental strand, 1219 - 1145
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagc 421  Q
    ||||||||||||| |||||||||||||| ||| |||||| ||| |||||||||||| |||||||| ||||||||||    
T  1219 tatcatataagtgcttatgtataagcta-tttctataacaaaagataaaataaagtcaaactattctcatataagc 1145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 421
Target Start/End: Original strand, 2756 - 2830
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagc 421  Q
    ||||||||||||| |||||||||||||| ||| |||||| ||| |||||||||||| |||||||| ||||||||||    
T  2756 tatcatataagtgcttatgtataagcta-tttctataacaaaagataaaataaagtcaaactattctcatataagc 2830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 425
Target Start/End: Complemental strand, 22684689 - 22684583
Alignment:
Q  319 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatat 417  Q
    |||||||| || | |||||||| |||| |||||||||| || || ||||||||||| ||| ||||||||||  ||||||||||| ||| | |||||||||    
T  22684689 ttaattaattgcttataccatatgcgcttatcatataaatgcttctgtataagcta-tttctataacaaacggtaaaataaagtcaaattgttttcatat 22684591  T
Q  418 aagctgtt 425  Q
    ||||||||    
T  22684590 aagctgtt 22684583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 319 - 420
Target Start/End: Original strand, 54414846 - 54414950
Alignment:
Q  319 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctat--tttttat-aacaaacataaaataaagttaaactattttcat 415  Q
    ||||||||||||| ||   |||||||| ||||||||||||| |||||||||||||||  ||||||| || ||| | |||||||||| || |||||||| |    
T  54414846 ttaattaagtgtttatgttataagcgcttatcatataagtgcttatgtataagctattatttttataaagaaagagaaaataaagtcaatctattttcct 54414945  T
Q  416 ataag 420  Q
    |||||    
T  54414946 ataag 54414950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 347 - 414
Target Start/End: Complemental strand, 28582054 - 28581988
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttca 414  Q
    ||||||| |||||||||||||||| ||||||||||  | ||| |||||||||||| ||||||||||||    
T  28582054 tatcatagaagtgtttatgtataaactattttttagca-aaagataaaataaagtcaaactattttca 28581988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 401
Target Start/End: Complemental strand, 8423010 - 8422928
Alignment:
Q  319 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagt 401  Q
    ||||||||||||| ||| ||||| |  |||||||||| ||| |||||||||||||||||||   || ||| ||||||||||||    
T  8423010 ttaattaagtgtttatagcataatcatgtatcatatatgtgcttatgtataagctatttttataaaaaaagataaaataaagt 8422928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 526
Target Start/End: Complemental strand, 18628555 - 18628501
Alignment:
Q  472 tcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 526  Q
    ||||||||| ||||||||||||||| |||| ||||| |||||| |||||||||||    
T  18628555 tcataagttgttttcataagctctcccaaacagtctcacaagtgtttatgtcagt 18628501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 521
Target Start/End: Complemental strand, 27123359 - 27123305
Alignment:
Q  467 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 521  Q
    |||||||||||||| ||| |||||||||||||||| ||||| ||||||| |||||    
T  27123359 acatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatg 27123305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 467 - 524
Target Start/End: Original strand, 2996636 - 2996693
Alignment:
Q  467 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 524  Q
    |||||||||||||| |||||||||||||||||||| ||||| | ||||  ||||||||    
T  2996636 acatgtcataagttgttttcataagctctctcaaacagtctcaaaagtgcttatgtca 2996693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 337 - 422
Target Start/End: Original strand, 44319865 - 44319949
Alignment:
Q  337 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 422  Q
    ||||||| | ||||||||||||| | |||||||| |||||| | |||| ||| ||||||||||||  |||| ||||||||||||||    
T  44319865 cataagcacttatcatataagtgctcatgtataaactatttct-ataaaaaagataaaataaagtcgaactgttttcatataagct 44319949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 420
Target Start/End: Complemental strand, 437564 - 437504
Alignment:
Q  361 ttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataag 420  Q
    ||||||||||||||||||||||| | ||| |||||||||||||||| | | ||||||||||    
T  437564 ttatgtataagctattttttatagcaaaagataaaataaagttaaattgtgttcatataag 437504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 420
Target Start/End: Original strand, 24193500 - 24193583
Alignment:
Q  337 cataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataag 420  Q
    ||||| ||| ||||||||||||  ||||||||||| || |||||| ||| ||| |||||| | ||||||||||||||||||||||    
T  24193500 cataaacgcttatcatataagtacttatgtataagtta-tttttacaacaaaatataaaacagagttaaactattttcatataag 24193583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 506
Target Start/End: Original strand, 27725277 - 27725316
Alignment:
Q  467 acatgtcataagttattttcataagctctctcaaatagtc 506  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  27725277 acatgtcataagttatttccataagctctctcaaacagtc 27725316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 524
Target Start/End: Complemental strand, 33534174 - 33534119
Alignment:
Q  469 atgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtca 524  Q
    |||||| || || |||||||||||||||||||||| ||| ||||||| ||||||||    
T  33534174 atgtcacaatttgttttcataagctctctcaaatactctcacaagtacttatgtca 33534119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 419
Target Start/End: Complemental strand, 42322018 - 42321952
Alignment:
Q  353 ataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataa 419  Q
    ||||||||||||| ||||||||| ||||||||||||  |||||||||||| ||| | |||||||||||    
T  42322018 ataagtgtttatgaataagctat-ttttataacaaatgataaaataaagtcaaattgttttcatataa 42321952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 54325182 - 54325107
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 422  Q
    ||||||||||||| || ||||||| |||||| |  ||  ||| |||||||||||| ||||| ||||||||||||||    
T  54325182 tatcatataagtgcttgtgtataaactatttctattacaaaagataaaataaagtcaaactgttttcatataagct 54325107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 55437429 - 55437356
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 422  Q
    ||||||||||| | |||| |||||||||||| | |||||||  |||||||||||| ||| ||||||||||||||||    
T  55437429 tatcatataagcgattatctataagctatttct-ataacaat-ataaaataaagtcaaattattttcatataagct 55437356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 401
Target Start/End: Complemental strand, 32920543 - 32920491
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagt 401  Q
    ||||||||||||||||||| ||||||||| ||||||||| || ||||||||||||    
T  32920543 tatcatataagtgtttatggataagctat-ttttataac-aagataaaataaagt 32920491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 414
Target Start/End: Original strand, 47970245 - 47970310
Alignment:
Q  349 tcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttca 414  Q
    ||||||||||| |||||||||||||| ||| |||||| ||| ||||||| |||| ||||||||||||    
T  47970245 tcatataagtgcttatgtataagcta-tttctataacaaaagataaaatgaagtcaaactattttca 47970310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 514
Target Start/End: Complemental strand, 1555017 - 1554968
Alignment:
Q  465 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagt 514  Q
    |||||||||||||| |||||||||||  ||||||||| |||||| |||||    
T  1555017 gaacatgtcataagctattttcataaattctctcaaacagtcttgcaagt 1554968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 422
Target Start/End: Original strand, 4071811 - 4071882
Alignment:
Q  350 catataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 422  Q
    ||||||||||||||| ||||| |||||| | ||||||||  |||||||||||| ||| ||||||||||||||||    
T  4071811 catataagtgtttatatataa-ctatttct-ataacaaaagataaaataaagtcaaattattttcatataagct 4071882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 419
Target Start/End: Complemental strand, 5219602 - 5219573
Alignment:
Q  390 ataaaataaagttaaactattttcatataa 419  Q
    ||||||||||||||||||||||||||||||    
T  5219602 ataaaataaagttaaactattttcatataa 5219573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 420
Target Start/End: Original strand, 23819015 - 23819087
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataag 420  Q
    ||||||| ||||||||||||||||| || |||  |||||||| |||||||  ||| ||||| ||||||||||||    
T  23819015 tatcatacaagtgtttatgtataagtta-tttccataacaaatataaaatgtagtcaaactgttttcatataag 23819087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 419
Target Start/End: Original strand, 36734818 - 36734890
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataacaaaca-taaaataaagttaaactattttcatataa 419  Q
    ||||||||||||| |||||||||| || ||| | ||||||||   ||||||||||| |||||||||||||||||    
T  36734818 tatcatataagtgcttatgtataatctctttct-ataacaaaaggtaaaataaagtcaaactattttcatataa 36734890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 422
Target Start/End: Original strand, 49219059 - 49219139
Alignment:
Q  342 gcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 422  Q
    |||| |||||||| |||| ||| ||||||| ||||| | ||||||||  |||||||||||| ||| ||||||||||||||||    
T  49219059 gcgcttatcatatgagtggttaggtataagttatttct-ataacaaaatataaaataaagtcaaattattttcatataagct 49219139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Original strand, 52428733 - 52428766
Alignment:
Q  472 tcataagttattttcataagctctctcaaatagt 505  Q
    ||||||||| ||||||||||||||||||||||||    
T  52428733 tcataagttgttttcataagctctctcaaatagt 52428766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 401
Target Start/End: Original strand, 54986348 - 54986400
Alignment:
Q  348 atcatataagtgtttatgtataagctattttttataacaaacataaaataaagt 401  Q
    ||||||||||| ||||||||||||||| ||| ||||||||| |||| |||||||    
T  54986348 atcatataagtttttatgtataagcta-tttctataacaaaaataagataaagt 54986400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 416
Target Start/End: Original strand, 12162911 - 12162947
Alignment:
Q  380 tataacaaacataaaataaagttaaactattttcata 416  Q
    |||||||||||||||||||||| ||| ||||||||||    
T  12162911 tataacaaacataaaataaagtcaaattattttcata 12162947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 422
Target Start/End: Original strand, 21157693 - 21157768
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataagct 422  Q
    ||||||||||||| |||||||| ||||| |||| ||||||||  ||||| |||||| ||||| ||||||| ||||||    
T  21157693 tatcatataagtgcttatgtatcagcta-ttttgataacaaagtataaactaaagtcaaactgttttcatgtaagct 21157768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 422
Target Start/End: Original strand, 30024597 - 30024700
Alignment:
Q  319 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatat 417  Q
    ||||||||||||| |||  | |||||  ||||||||||||  ||||| ||||| ||||| | ||||||||  |||||||||||| ||| | |||||||||    
T  30024597 ttaattaagtgtttatagtagaagcgtttatcatataagtacttatgcataagttatttct-ataacaaaagataaaataaagtaaaattgttttcatat 30024695  T
Q  418 aagct 422  Q
    |||||    
T  30024696 aagct 30024700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 421
Target Start/End: Original strand, 32724046 - 32724118
Alignment:
Q  349 tcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagc 421  Q
    |||||| |||| |||||| ||| |||||| |  ||  ||| |||||||||||| |||||||||||||||||||    
T  32724046 tcatatcagtgcttatgtctaatctatttctattacaaaagataaaataaagtcaaactattttcatataagc 32724118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 377
Target Start/End: Original strand, 52645623 - 52645655
Alignment:
Q  345 cgtatcatataagtgtttatgtataagctattt 377  Q
    |||||||||||||||||||||||| ||||||||    
T  52645623 cgtatcatataagtgtttatgtatgagctattt 52645655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 55599063 - 55599115
Alignment:
Q  319 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataag 371  Q
    |||||||||||   ||| ||||||||||||||| |||||||||||| ||||||    
T  55599063 ttaattaagtgcatatagcataagcgcgtatcacataagtgtttatatataag 55599115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 514
Target Start/End: Original strand, 56007734 - 56007789
Alignment:
Q  458 gacaatcgaacatgtcataagttattttcataagctctctcaaatagtcttacaagt 514  Q
    ||||||||| |||||||||||||| ||  || |||||||||||| ||||||||||||    
T  56007734 gacaatcga-catgtcataagttacttgtattagctctctcaaacagtcttacaagt 56007789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 467 - 525
Target Start/End: Original strand, 21130675 - 21130733
Alignment:
Q  467 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcag 525  Q
    |||||||| ||| ||||| |||||||||||||||| ||||| |||||||||||||||||    
T  21130675 acatgtcaaaagctatttccataagctctctcaaacagtctcacaagtatttatgtcag 21130733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 422
Target Start/End: Complemental strand, 34788581 - 34788497
Alignment:
Q  338 ataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 422  Q
    |||||||| |||||||||| || ||| |||||||||||||||   | |||| |||||||||||| ||||| ||| ||||||||||    
T  34788581 ataagcgcttatcatataaatgcttacgtataagctatttttatgaccaaagataaaataaagtcaaactgtttccatataagct 34788497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 420
Target Start/End: Original strand, 2699223 - 2699304
Alignment:
Q  339 taagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataag 420  Q
    ||||||| ||||||||| |||| ||| |||||| ||||| | | ||||||  |||||||||||||||||||||||||||||||    
T  2699223 taagcgcctatcatatacgtgtctatatataagttatttct-acaacaaaatataaaataaagttaaactattttcatataag 2699304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 422
Target Start/End: Complemental strand, 28769494 - 28769409
Alignment:
Q  337 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 422  Q
    |||||| || |||||||||| || |||||||||||||| ||  |||||||||| ||||||| |||| ||||||||||| ||||||||    
T  28769494 cataagtgcttatcatataaatgcttatgtataagcta-ttcctataacaaactataaaattaagtcaaactattttcttataagct 28769409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 354 - 418
Target Start/End: Original strand, 4558730 - 4558794
Alignment:
Q  354 taagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatata 418  Q
    |||||||||||||||||||||||| | |||| |||  |||||||||||||||| ||||||||||||    
T  4558730 taagtgtttatgtataagctatttct-ataataaaagataaaataaagttaaattattttcatata 4558794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 347 - 420
Target Start/End: Original strand, 10722556 - 10722629
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataag 420  Q
    ||||||||||||| || ||||||| ||  ||| ||||||||| |||||||||| | ||| ||||||||||||||    
T  10722556 tatcatataagtgcttgtgtataatcttatttatataacaaagataaaataaactaaaattattttcatataag 10722629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 436
Target Start/End: Original strand, 26215435 - 26215510
Alignment:
Q  361 ttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagctgtttctataagcta 436  Q
    ||||||||||||||||| | ||||||||  |||||||||||||||||||||||| |||||  |||||  ||||||||    
T  26215435 ttatgtataagctatttct-ataacaaaagataaaataaagttaaactattttcgtataatatgttttcataagcta 26215510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 405
Target Start/End: Complemental strand, 2595134 - 2595084
Alignment:
Q  354 taagtgtttatgtataagctattttttataacaaacataaaataaagttaaa 405  Q
    |||||||||||||||||| | ||||||||||| || ||||||||||||||||    
T  2595134 taagtgtttatgtataaggttttttttataac-aagataaaataaagttaaa 2595084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 422
Target Start/End: Complemental strand, 42237547 - 42237492
Alignment:
Q  368 taagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 422  Q
    |||||| ||||||||||||||  |||||||||||||||| | ||||||||||||||    
T  42237547 taagctcttttttataacaaaagataaaataaagttaaattgttttcatataagct 42237492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 521
Target Start/End: Original strand, 9700064 - 9700118
Alignment:
Q  467 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 521  Q
    ||||||||||| ||  ||||| ||||||||||||||||||| |||||| ||||||    
T  9700064 acatgtcataaattgatttcacaagctctctcaaatagtctcacaagtgtttatg 9700118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 521
Target Start/End: Original strand, 14949929 - 14949983
Alignment:
Q  467 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 521  Q
    ||||||||||||||||||||||||||||||  ||| ||||| |||| | ||||||    
T  14949929 acatgtcataagttattttcataagctctcctaaacagtctcacaaatgtttatg 14949983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 421
Target Start/End: Original strand, 26717182 - 26717254
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagc 421  Q
    ||||||||||||| || || |||||||| |||| |||||||  |||||||||||| |||||||||||| ||||||    
T  26717182 tatcatataagtgcttctgaataagctaatttt-ataacaag-ataaaataaagtcaaactattttcaaataagc 26717254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 377
Target Start/End: Complemental strand, 31875732 - 31875674
Alignment:
Q  319 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattt 377  Q
    ||||| ||| ||| ||| ||||||||| ||||||||||||| |||| ||||||||||||    
T  31875732 ttaatgaagcgtttatagcataagcgcttatcatataagtgcttatctataagctattt 31875674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 422
Target Start/End: Complemental strand, 3645986 - 3645886
Alignment:
Q  322 attaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataa-caaacataaaataaagttaaactattttcatataag 420  Q
    ||||| |||| ||| |||||| |  ||||||||||||| || ||||||||||| ||| |||||  ||| |||||| ||| | ||||||||||||||||||    
T  3645986 attaaatgtttatagcataagtgtttatcatataagtgcttgtgtataagcta-tttctataagaaaatataaaacaaaatcaaactattttcatataag 3645888  T
Q  421 ct 422  Q
    ||    
T  3645887 ct 3645886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 422
Target Start/End: Complemental strand, 11056821 - 11056737
Alignment:
Q  338 ataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaa-taaagttaaactattttcatataagct 422  Q
    |||||| | ||||||||||||||| ||| || |||||||| | ||||||||   |||| ||||||| |||||||||||||||||||    
T  11056821 ataagctcttatcatataagtgttcatgcatgagctatttct-ataacaaaaggaaaaataaagttgaactattttcatataagct 11056737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 27412884 - 27412851
Alignment:
Q  472 tcataagttattttcataagctctctcaaatagt 505  Q
    ||||||||| ||||||||||||||||||||||||    
T  27412884 tcataagttgttttcataagctctctcaaatagt 27412851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 424
Target Start/End: Complemental strand, 29263016 - 29262942
Alignment:
Q  349 tcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataagctgt 424  Q
    |||||||||||||||| |||  | |||||| ||||| | || |||||||||||| ||| ||||||||||||||||||    
T  29263016 tcatataagtgtttatatat--gttattttctataatagaagataaaataaagtcaaattattttcatataagctgt 29262942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 514
Target Start/End: Complemental strand, 30191150 - 30191101
Alignment:
Q  465 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagt 514  Q
    |||||||||||||||| ||| ||||||||||| |||| ||||| ||||||    
T  30191150 gaacatgtcataagttgtttccataagctctcccaaacagtctaacaagt 30191101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 379
Target Start/End: Original strand, 6918956 - 6918988
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttt 379  Q
    ||||||||||||| |||||||||||||||||||    
T  6918956 tatcatataagtgcttatgtataagctattttt 6918988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 538
Target Start/End: Original strand, 10923674 - 10923730
Alignment:
Q  482 ttttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataaagtcaa 538  Q
    ||||||||| ||||||||||| ||||||||||| |||||| || | |||||| ||||    
T  10923674 ttttcataaactctctcaaattgtcttacaagtgtttatgccactaaataaactcaa 10923730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 526
Target Start/End: Original strand, 11376765 - 11376825
Alignment:
Q  466 aacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 526  Q
    ||||||||| ||| |||||||||||| |||| |||||||||| ||||| | |||| |||||    
T  11376765 aacatgtcacaagctattttcataagttctcccaaatagtctcacaagaacttatatcagt 11376825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 379
Target Start/End: Complemental strand, 11952510 - 11952478
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttt 379  Q
    |||||||||||||||||||||||||| ||||||    
T  11952510 tatcatataagtgtttatgtataagccattttt 11952478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 522
Target Start/End: Complemental strand, 31915297 - 31915245
Alignment:
Q  470 tgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgt 522  Q
    ||||||||||| |||  ||||||| ||||||| ||||| ||||||||||||||    
T  31915297 tgtcataagttgtttgtataagctttctcaaacagtctcacaagtatttatgt 31915245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 426
Target Start/End: Original strand, 40357824 - 40357903
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagctgttt 426  Q
    |||||||||||| ||||||||||||||  ||  |||||| ||| |||||||||||| ||| |||||||||| | |||||||    
T  40357824 tatcatataagtatttatgtataagct-cttgatataacaaaagataaaataaagtaaaattattttcataaatgctgttt 40357903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 339 - 422
Target Start/End: Original strand, 40428471 - 40428555
Alignment:
Q  339 taagcgcgtatcatataagtgtttatgtataagctattttttataac--aaacataaaataaagttaaactattttcatataagct 422  Q
    ||||||| ||| ||||||||| ||||| |||||| ||||| ||||||  ||| |||||||||||||||| ||||||||||||||||    
T  40428471 taagcgcctattatataagtgattatggataagc-attttctataacgaaaaaataaaataaagttaaattattttcatataagct 40428555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 422
Target Start/End: Original strand, 49060465 - 49060540
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagct 422  Q
    |||||||||||| ||||||||||||||| ||| |||||| ||| |||||||||||| ||| |||||| |||||||||    
T  49060465 tatcatataagtatttatgtataagcta-tttctataacaaaaaataaaataaagtcaaattatttttatataagct 49060540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 526
Target Start/End: Complemental strand, 3500974 - 3500913
Alignment:
Q  467 acatgtcataagttattttcataagctctctcaaatagtctta--caagtatttatgtcagt 526  Q
    |||||||||||||||||| ||||||||||| ||||||| ||||  ||||| |||||||||||    
T  3500974 acatgtcataagttatttccataagctctcacaaatagacttacgcaagtttttatgtcagt 3500913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 466 - 532
Target Start/End: Complemental strand, 22387904 - 22387838
Alignment:
Q  466 aacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagtgaataa 532  Q
    |||||| |||||||| ||||||||||||||| |||| ||||| ||| || ||||||||||| |||||    
T  22387904 aacatgccataagttgttttcataagctctcccaaacagtctcacacgtgtttatgtcagtaaataa 22387838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 469 - 503
Target Start/End: Original strand, 31149705 - 31149739
Alignment:
Q  469 atgtcataagttattttcataagctctctcaaata 503  Q
    |||||||||||||||||||||||||||||||||||    
T  31149705 atgtcataagttattttcataagctctctcaaata 31149739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 469 - 503
Target Start/End: Original strand, 31167997 - 31168031
Alignment:
Q  469 atgtcataagttattttcataagctctctcaaata 503  Q
    |||||||||||||||||||||||||||||||||||    
T  31167997 atgtcataagttattttcataagctctctcaaata 31168031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 420
Target Start/End: Complemental strand, 45593864 - 45593791
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataag 420  Q
    |||||||||| || ||||||||||||||||| |  ||||||| ||||||||||||| ||||| ||||||||||||    
T  45593864 tatcatataaatgcttatgtataagctatttctg-taacaaaacataaaataaagtcaaactgttttcatataag 45593791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 422
Target Start/End: Complemental strand, 26935723 - 26935620
Alignment:
Q  319 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatat 417  Q
    ||||||||| | | |||||||||| |  ||||||||||||| || ||| |||||||| ||||||||||||  ||||||||| |||||| | |||||||||    
T  26935723 ttaattaagcgcttataccataagagattatcatataagtgcttttgtgtaagctat-ttttataacaaatgataaaataaggttaaattgttttcatat 26935625  T
Q  418 aagct 422  Q
     ||||    
T  26935624 gagct 26935620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 337 - 377
Target Start/End: Original strand, 27389298 - 27389338
Alignment:
Q  337 cataagcgcgtatcatataagtgtttatgtataagctattt 377  Q
    |||||| || |||||||||||||||||||||||||||||||    
T  27389298 cataagtgcttatcatataagtgtttatgtataagctattt 27389338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 422
Target Start/End: Original strand, 36370595 - 36370669
Alignment:
Q  347 tatcatataagtgttt-atgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 422  Q
    ||||||||| |||||| |||||||||||||||| |||||| || ||||||| |||||||||| |||||| |||||||    
T  36370595 tatcatatatgtgttttatgtataagctattttctataac-aagataaaat-aagttaaactgttttcacataagct 36370669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 526
Target Start/End: Complemental strand, 44151468 - 44151424
Alignment:
Q  482 ttttcataagctctctcaaatagtcttacaagtatttatgtcagt 526  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||||    
T  44151468 ttttcataagctctctcaaataatctcacaagtacttatgtcagt 44151424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 395
Target Start/End: Original strand, 45078218 - 45078265
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataacaaacataaaa 395  Q
    ||||||||||||| |||||||||||||| ||||||||||||| ||||||    
T  45078218 tatcatataagtgcttatgtataagcta-tttttataacaaaaataaaa 45078265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 417
Target Start/End: Original strand, 47004012 - 47004082
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataacaa-acataaaataaagttaaactattttcatat 417  Q
    |||||||||||||||||| | ||||||| ||| |||||||| | |||||||||||| |||||||||| ||||    
T  47004012 tatcatataagtgtttatatgtaagcta-tttctataacaatagataaaataaagtcaaactatttttatat 47004082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 377
Target Start/End: Original strand, 28844383 - 28844441
Alignment:
Q  319 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattt 377  Q
    ||||||||||||| ||| ||||||||| |||  |||||||| ||||||||||| |||||    
T  28844383 ttaattaagtgtttatagcataagcgcttattgtataagtgcttatgtataagatattt 28844441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 512
Target Start/End: Original strand, 44808221 - 44808266
Alignment:
Q  467 acatgtcataagttattttcataagctctctcaaatagtcttacaa 512  Q
    ||||||||||||||||||||||||| ||| ||||| ||||| ||||    
T  44808221 acatgtcataagttattttcataaggtctatcaaacagtctgacaa 44808266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 337 - 377
Target Start/End: Complemental strand, 1431463 - 1431423
Alignment:
Q  337 cataagcgcgtatcatataagtgtttatgtataagctattt 377  Q
    |||||| || ||||||||||||||||||||||||| |||||    
T  1431463 cataagtgcttatcatataagtgtttatgtataagttattt 1431423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 514
Target Start/End: Original strand, 8094368 - 8094416
Alignment:
Q  466 aacatgtcataagttattttcataagctctctcaaatagtcttacaagt 514  Q
    ||||||||||||| | |||||||||  ||||||||||||||| ||||||    
T  8094368 aacatgtcataagctgttttcataaaatctctcaaatagtctcacaagt 8094416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 422
Target Start/End: Original strand, 22759111 - 22759186
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagct 422  Q
    ||||||||||| |||||||| ||||||| ||| |||||| ||| |||||||||||  ||| | ||||||||||||||    
T  22759111 tatcatataagcgtttatgtttaagcta-tttgtataacaaaagataaaataaaggaaaattgttttcatataagct 22759186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 422
Target Start/End: Complemental strand, 27481435 - 27481364
Alignment:
Q  351 atataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataagct 422  Q
    |||||||||||||||||||||||| ||| |||||||||  ||||||  |||| ||||| ||| ||||||||||    
T  27481435 atataagtgtttatgtataagcta-tttctataacaaaggataaaacgaagtcaaactgtttccatataagct 27481364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 337 - 373
Target Start/End: Complemental strand, 27518005 - 27517969
Alignment:
Q  337 cataagcgcgtatcatataagtgtttatgtataagct 373  Q
    |||||| || |||||||||||||||||||||||||||    
T  27518005 cataagtgcttatcatataagtgtttatgtataagct 27517969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 419
Target Start/End: Original strand, 30496622 - 30496701
Alignment:
Q  340 aagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataa 419  Q
    |||||| ||||| |||||||||||||||||| ||| ||| |||||| ||| |||||||||||| ||| | ||||| |||||    
T  30496622 aagcgcatatcacataagtgtttatgtataaacta-tttctataacaaaatataaaataaagtcaaattgttttcgtataa 30496701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 337 - 420
Target Start/End: Original strand, 31341109 - 31341192
Alignment:
Q  337 cataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataag 420  Q
    ||||||||| |||||| ||| || |||||||||||||| ||| |||||| ||| |||||||||||| |||||  ||| |||||||    
T  31341109 cataagcgcttatcatctaaatgcttatgtataagcta-tttgtataacaaaagataaaataaagtcaaactggttttatataag 31341192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 341 - 420
Target Start/End: Original strand, 35536026 - 35536105
Alignment:
Q  341 agcgcgtatcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataag 420  Q
    ||||| ||||||||||  | |||||||||||||| ||| ||||||| || |||||||||||| ||| | ||||||||||||    
T  35536026 agcgcttatcatataaaggcttatgtataagcta-tttctataacataagataaaataaagtcaaattgttttcatataag 35536105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 521
Target Start/End: Original strand, 36537969 - 36538025
Alignment:
Q  465 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 521  Q
    |||||||||||||||| ||| |||||| ||||||||| | ||| |||||| ||||||    
T  36537969 gaacatgtcataagttgtttccataagttctctcaaacaatctcacaagtgtttatg 36538025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 39551693 - 39551618
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagct 422  Q
    |||||||||||| |||| |||||||||| ||| |||||| ||| ||| | |||||| ||||| ||||||||||||||    
T  39551693 tatcatataagtatttaagtataagcta-tttctataacaaaagatatactaaagtaaaactgttttcatataagct 39551618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 40689088 - 40689056
Alignment:
Q  390 ataaaataaagttaaactattttcatataagct 422  Q
    |||||||||||||||| ||||||||||||||||    
T  40689088 ataaaataaagttaaattattttcatataagct 40689056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 355 - 437
Target Start/End: Complemental strand, 2034575 - 2034494
Alignment:
Q  355 aagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagctgtttctataagctaa 437  Q
    ||||| ||||||||||||| ||||| | |||||| |||||||||||| |||||| ||||||||||||| |||  |||||||||    
T  2034575 aagtgcttatgtataagctgttttt-acaacaaagataaaataaagtcaaactactttcatataagcttttttcataagctaa 2034494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 337 - 422
Target Start/End: Complemental strand, 7351763 - 7351678
Alignment:
Q  337 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 422  Q
    ||||||| | |||||||||| || |||||||||| |||||| | |||| |||| |||||||||||||||||| ||||||||||||||    
T  7351763 cataagctcttatcatataaatgcttatgtataaactatttat-ataataaactataaaataaagttaaactgttttcatataagct 7351678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 349 - 423
Target Start/End: Original strand, 32513752 - 32513825
Alignment:
Q  349 tcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagctg 423  Q
    |||||| |||||||||| ||||| ||||| | |||||||| |||||||||||| ||||||||| |||||||||||    
T  32513752 tcatattagtgtttatgcataagttatttct-ataacaaaaataaaataaagtcaaactatttccatataagctg 32513825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 10452505 - 10452430
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 422  Q
    |||||||| |||| ||||||||||||||||| | ||||||||  |||||||||| | ||||||||||||||||||||    
T  10452505 tatcatatcagtgcttatgtataagctatttct-ataacaaaatataaaataaaatcaaactattttcatataagct 10452430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 467 - 514
Target Start/End: Complemental strand, 1669805 - 1669758
Alignment:
Q  467 acatgtcataagttattttcataagctctctcaaatagtcttacaagt 514  Q
    |||||||||||||| ||||||||||||||| ||| |||||||||||||    
T  1669805 acatgtcataagttgttttcataagctctcccaattagtcttacaagt 1669758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 338 - 420
Target Start/End: Complemental strand, 3217344 - 3217262
Alignment:
Q  338 ataagcgcgtatcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataag 420  Q
    |||||||  ||||||||||||| |||||||||||||||||||  ||| | || |||||||||||| ||| ||||||||||||||    
T  3217344 ataagcgattatcatataagtgcttatgtataagctatttttg-taagagaagataaaataaagtcaaattattttcatataag 3217262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 465 - 512
Target Start/End: Complemental strand, 20368189 - 20368142
Alignment:
Q  465 gaacatgtcataagttattttcataagctctctcaaatagtcttacaa 512  Q
    |||||||||||||||| |||||||||| |||| |||||||||||||||    
T  20368189 gaacatgtcataagttgttttcataagttctcccaaatagtcttacaa 20368142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 521
Target Start/End: Complemental strand, 2460158 - 2460104
Alignment:
Q  467 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 521  Q
    |||||||||||||| ||| |||||||||||||||| ||||| ||||||| |||||    
T  2460158 acatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatg 2460104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 377
Target Start/End: Original strand, 32975875 - 32975933
Alignment:
Q  319 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattt 377  Q
    ||||||||| ||| ||| ||||||||| | ||||||||||||||||||||||| |||||    
T  32975875 ttaattaagcgtttatagcataagcgcttctcatataagtgtttatgtataagttattt 32975933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 1402964 - 1402996
Alignment:
Q  390 ataaaataaagttaaactattttcatataagct 422  Q
    |||||||||||||||||||||||||||||||||    
T  1402964 ataaaataaagttaaactattttcatataagct 1402996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 422
Target Start/End: Original strand, 10032496 - 10032571
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataacaa-acataaaataaagttaaactattttcatataagct 422  Q
    |||||||||| ||||||||||||||||| |||||||||||| |  | ||||||||  |||||| |||||||||||||    
T  10032496 tatcatataaatgtttatgtataagcta-tttttataacaataggtgaaataaaggcaaactaatttcatataagct 10032571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 521
Target Start/End: Complemental strand, 27693448 - 27693392
Alignment:
Q  465 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 521  Q
    |||||||||||||||| ||| |||||  ||||||||||||||| ||||||| |||||    
T  27693448 gaacatgtcataagttgtttccataaattctctcaaatagtctcacaagtacttatg 27693392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 421
Target Start/End: Complemental strand, 9833270 - 9833168
Alignment:
Q  319 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataacaa-acataaaataaagttaaactattttcatat 417  Q
    ||||||||||||| ||| ||||||||  ||||||||||||| || | |||||| || ||| ||| |||| | |||||||||||| ||||| ||||| |||    
T  9833270 ttaattaagtgtttataacataagcgtttatcatataagtgcttctctataagata-tttctattacaataaataaaataaagtcaaactgttttcttat 9833172  T
Q  418 aagc 421  Q
    ||||    
T  9833171 aagc 9833168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 404
Target Start/End: Original strand, 24332858 - 24332924
Alignment:
Q  337 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaa 404  Q
    ||||||| | |||| |||||||| ||||||||||||||||| || ||| ||| |||||||||||||||    
T  24332858 cataagcacttatcctataagtgattatgtataagctatttctt-taaaaaagataaaataaagttaa 24332924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 526
Target Start/End: Complemental strand, 32577993 - 32577934
Alignment:
Q  467 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 526  Q
    |||||||||||||| |||||||||||||||||||| | | |  |||||||||||| ||||    
T  32577993 acatgtcataagttgttttcataagctctctcaaacaatgtcccaagtatttatgccagt 32577934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 422
Target Start/End: Original strand, 22742281 - 22742366
Alignment:
Q  337 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaa-cataaaataaagttaaactattttcatataagct 422  Q
    ||||||||| |||| |||||||  |||| ||||||||| ||| |||||||||  |||||||||||| ||| | ||||||||||||||    
T  22742281 cataagcgcttatcgtataagttcttatctataagcta-tttgtataacaaaggataaaataaagtcaaattgttttcatataagct 22742366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 30817709 - 30817671
Alignment:
Q  350 catataagtgtttatgtataagctattttttataacaaa 388  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  30817709 catataagtgcttatgtatatgctattttttataacaaa 30817671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 521
Target Start/End: Original strand, 30863309 - 30863363
Alignment:
Q  467 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 521  Q
    |||||||||||||| ||||||||||||||  |||| ||||| |||||| ||||||    
T  30863309 acatgtcataagttgttttcataagctctaccaaagagtctaacaagtgtttatg 30863363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 522
Target Start/End: Original strand, 30865547 - 30865601
Alignment:
Q  468 catgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgt 522  Q
    ||||||||||||||||| |||||||||||| |||  |||| |||||| |||||||    
T  30865547 catgtcataagttatttccataagctctcttaaactgtctaacaagtgtttatgt 30865601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 377
Target Start/End: Complemental strand, 33068734 - 33068676
Alignment:
Q  319 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattt 377  Q
    ||||||||||||| ||| ||||||||| ||||| |||| || ||||||||||| |||||    
T  33068734 ttaattaagtgtttatagcataagcgcttatcaaataaatgcttatgtataagttattt 33068676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 424
Target Start/End: Complemental strand, 27693581 - 27693507
Alignment:
Q  349 tcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcatataagctgt 424  Q
    |||||||||||||||| |||  | |||||| ||||| | || |||||||||||| ||| ||||||||||||||||||    
T  27693581 tcatataagtgtttatatat--gttattttctataatagaagataaaataaagtcaaattattttcatataagctgt 27693507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 526
Target Start/End: Original strand, 27857423 - 27857480
Alignment:
Q  469 atgtcataagttattttcataagctctctcaaatagtcttacaagtatttatgtcagt 526  Q
    |||||||||||| ||||||||||||||| |||| ||| | |||||| | |||||||||    
T  27857423 atgtcataagttgttttcataagctctcccaaacagtttcacaagtgtctatgtcagt 27857480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 520
Target Start/End: Original strand, 32917260 - 32917313
Alignment:
Q  467 acatgtcataagttattttcataagctctctcaaatagtcttacaagtatttat 520  Q
    |||||||||||||| ||| ||||||||||| |||| ||||| |||||| |||||    
T  32917260 acatgtcataagttgtttccataagctctcccaaacagtctcacaagtgtttat 32917313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 407
Target Start/End: Complemental strand, 33911422 - 33911366
Alignment:
Q  351 atataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaact 407  Q
    |||||||||||||||||||| ||| |||||||||| ||| || |||||||||||||||    
T  33911422 atataagtgtttatgtataatcta-tttttataacaaaagatcaaataaagttaaact 33911366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 419
Target Start/End: Complemental strand, 2027523 - 2027479
Alignment:
Q  376 tttttataacaaac-ataaaataaagttaaactattttcatataa 419  Q
    |||||||||||||  |||||||||||| |||||||||||||||||    
T  2027523 tttttataacaaaagataaaataaagtcaaactattttcatataa 2027479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 415
Target Start/End: Original strand, 8010282 - 8010349
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcat 415  Q
    ||||||||||||| ||| |||||||||| ||| ||||||||  |||||||||||| || ||| ||||||    
T  8010282 tatcatataagtgcttaggtataagcta-tttctataacaacaataaaataaagtcaatctactttcat 8010349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 419
Target Start/End: Complemental strand, 28660877 - 28660833
Alignment:
Q  376 tttttataacaa-acataaaataaagttaaactattttcatataa 419  Q
    |||||||||||| | |||||||||||||||| |||||||||||||    
T  28660877 tttttataacaatagataaaataaagttaaattattttcatataa 28660833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 521
Target Start/End: Original strand, 31668430 - 31668474
Alignment:
Q  477 agttattttcataagctctctcaaatagtcttacaagtatttatg 521  Q
    |||| ||||||||||||||||| |||||||| |||||| ||||||    
T  31668430 agttgttttcataagctctctctaatagtctcacaagtgtttatg 31668474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 466 - 514
Target Start/End: Complemental strand, 2175857 - 2175809
Alignment:
Q  466 aacatgtcataagttattttcataagctctctcaaatagtcttacaagt 514  Q
    ||||||||||||||| ||||||||| || ||||||||||||||||||||    
T  2175857 aacatgtcataagttgttttcataaactatctcaaatagtcttacaagt 2175809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 345 - 420
Target Start/End: Complemental strand, 25459770 - 25459696
Alignment:
Q  345 cgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataag 420  Q
    |||||||| |||||| || ||||||| ||||| || |||||||| |||| |||||| |||||||||||||||||||    
T  25459770 cgtatcatgtaagtgcttttgtataaactattgtt-ataacaaagataatataaagataaactattttcatataag 25459696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 416
Target Start/End: Complemental strand, 16790501 - 16790432
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataacaa-acataaaataaagttaaactattttcata 416  Q
    ||||||||||||| ||||||||||||||| ||||||||||| | |||||||||| | ||| ||||||||||    
T  16790501 tatcatataagtgcttatgtataagctat-ttttataacaacagataaaataaaatcaaattattttcata 16790432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 469 - 514
Target Start/End: Complemental strand, 25182992 - 25182947
Alignment:
Q  469 atgtcataagttattttcataagctctctcaaatagtcttacaagt 514  Q
    |||||||||||| |||||||||||||||||||| ||||| ||||||    
T  25182992 atgtcataagttgttttcataagctctctcaaacagtctcacaagt 25182947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 25183134 - 25183058
Alignment:
Q  347 tatcatataagtgttta-tgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 422  Q
    ||||||||||||||||| ||||||| |||||||| ||||||||  || |||||||||||| |||||||||||| ||||    
T  25183134 tatcatataagtgtttaatgtataaactattttt-ataacaaaagattaaataaagttaagctattttcatatgagct 25183058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 337 - 378
Target Start/End: Complemental strand, 28843012 - 28842971
Alignment:
Q  337 cataagcgcgtatcatataagtgtttatgtataagctatttt 378  Q
    ||||||||| ||||||||||||| ||||||||||||||||||    
T  28843012 cataagcgcttatcatataagtgcttatgtataagctatttt 28842971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 418
Target Start/End: Original strand, 38462206 - 38462277
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatata 418  Q
    |||||||||||||||||| ||||||||| ||| |||| | ||| |||||||||||| ||||| ||||||||||    
T  38462206 tatcatataagtgtttatttataagcta-tttctataccaaaagataaaataaagtcaaactgttttcatata 38462277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 379
Target Start/End: Complemental strand, 49772813 - 49772781
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttt 379  Q
    |||||||||||||||||||||||||||||||||    
T  49772813 tatcatataagtgtttatgtataagctattttt 49772781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 514
Target Start/End: Original strand, 1810040 - 1810087
Alignment:
Q  467 acatgtcataagttattttcataagctctctcaaatagtcttacaagt 514  Q
    |||||||||||||| ||| | |||||||||||||||||||| ||||||    
T  1810040 acatgtcataagttgtttccgtaagctctctcaaatagtctcacaagt 1810087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 420
Target Start/End: Original strand, 22232742 - 22232824
Alignment:
Q  338 ataagcgcgtatcatataagtgtttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataag 420  Q
    |||||| | |||||||||| || | ||||||||||||||| | ||||||||  |||||||||||| ||||| ||||||||||||    
T  22232742 ataagctcttatcatataaatgctcatgtataagctatttat-ataacaaatgataaaataaagtcaaactgttttcatataag 22232824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 422
Target Start/End: Original strand, 28779274 - 28779356
Alignment:
Q  340 aagcgcgtatcatataagtgtttatgtataagctattttttataacaa-acataaaataaagttaaactattttcatataagct 422  Q
    |||||| |||||||||| || || |||||||||| ||||| ||||||  | || ||||||||| ||||||||||||||||||||    
T  28779274 aagcgcttatcatataattgcttttgtataagctgttttt-ataacatcagatgaaataaagtcaaactattttcatataagct 28779356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 422
Target Start/End: Original strand, 32703063 - 32703138
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcatataagct 422  Q
    |||||||||| |||||||||||||||||||| |  ||  ||| |||||||||| | ||| | ||||||||||||||    
T  32703063 tatcatataaatgtttatgtataagctatttctattataaaagataaaataaactcaaattgttttcatataagct 32703138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 507
Target Start/End: Complemental strand, 40880954 - 40880915
Alignment:
Q  468 catgtcataagttattttcataagctctctcaaatagtct 507  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  40880954 catgtcataagttgttttcataagctctctcaaacagtct 40880915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 524
Target Start/End: Original strand, 47584523 - 47584570
Alignment:
Q  477 agttattttcataagctctctcaaatagtcttacaagtatttatgtca 524  Q
    |||| |||||||||||||||||||||||||| ||||||  ||||||||    
T  47584523 agttcttttcataagctctctcaaatagtctcacaagtgcttatgtca 47584570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 521
Target Start/End: Original strand, 50015948 - 50016003
Alignment:
Q  466 aacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 521  Q
    ||||||||||| ||| |||||||||| ||||||||| ||||| |||||| ||||||    
T  50015948 aacatgtcatacgttcttttcataagttctctcaaacagtctcacaagtgtttatg 50016003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 416
Target Start/End: Complemental strand, 12985497 - 12985399
Alignment:
Q  319 ttaattaagtgttgataccataagcgcgtatcatata---agtgtttatgtataagctattttttataacaaacataaaataaagttaaactattttcat 415  Q
    ||||||||||||| || | |||||||| |||||| ||   |||||||||||||||| | ||| | |||||||| ||||||||||| |||||| |||||||    
T  12985497 ttaattaagtgtttattctataagcgcttatcatgtagtaagtgtttatgtataagttgtttct-ataacaaa-ataaaataaagataaactgttttcat 12985400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 507
Target Start/End: Original strand, 21574551 - 21574593
Alignment:
Q  465 gaacatgtcataagttattttcataagctctctcaaatagtct 507  Q
    |||||||||||||||| ||||||||||||||| |||| |||||    
T  21574551 gaacatgtcataagttgttttcataagctctcccaaacagtct 21574593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 511
Target Start/End: Original strand, 47132063 - 47132101
Alignment:
Q  473 cataagttattttcataagctctctcaaatagtcttaca 511  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  47132063 cataagttgttttcataagttctctcaaatagtcttaca 47132101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 538
Target Start/End: Original strand, 50004713 - 50004787
Alignment:
Q  465 gaacatgtcataagttattttcataa-gctctctcaaatagtcttacaagtatttatgtcagtgaataaagtcaa 538  Q
    |||||||||||||||| ||| ||||| || |||||||| |||||||||| |  |||||||||| |||||| ||||    
T  50004713 gaacatgtcataagttgtttccataaggccctctcaaacagtcttacaattgcttatgtcagtaaataaactcaa 50004787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 422
Target Start/End: Original strand, 1395611 - 1395671
Alignment:
Q  362 tatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 422  Q
    |||||||||||||||| | ||||||||  |||||||||||| ||| ||||||||||||||||    
T  1395611 tatgtataagctatttct-ataacaaaagataaaataaagtcaaattattttcatataagct 1395671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 514
Target Start/End: Complemental strand, 14548726 - 14548681
Alignment:
Q  469 atgtcataagttattttcataagctctctcaaatagtcttacaagt 514  Q
    |||||||| ||| |||||||||||||||||||| ||||| ||||||    
T  14548726 atgtcatacgttgttttcataagctctctcaaacagtctcacaagt 14548681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 419
Target Start/End: Complemental strand, 33965665 - 33965564
Alignment:
Q  319 ttaattaagtgttgataccataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatat 417  Q
    ||||||||| | | ||| ||||| | |||||  |||| |||||| |||| ||| ||||||||||||| |||  ||||||||||| ||||| |||||||||    
T  33965665 ttaattaagcgcttatagcataaacacgtattgtataggtgtttttgtacaagttattttttataacaaaaggtaaaataaagtcaaactgttttcatat 33965566  T
Q  418 aa 419  Q
    ||    
T  33965565 aa 33965564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 465 - 521
Target Start/End: Complemental strand, 2304280 - 2304224
Alignment:
Q  465 gaacatgtcataagttattttcataagctctctcaaatagtcttacaagtatttatg 521  Q
    ||||||||||||||||  ||||||||  ||||||||||||| | |||||| ||||||    
T  2304280 gaacatgtcataagttgctttcataatttctctcaaatagtttcacaagtgtttatg 2304224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 337 - 401
Target Start/End: Complemental strand, 9279481 - 9279417
Alignment:
Q  337 cataagcgcgtatcatataagtgtttatgtataagctattttttataacaaacataaaataaagt 401  Q
    ||||||||| |||||||||||  |||||||||||| ||||||||  || ||| ||| ||||||||    
T  9279481 cataagcgcttatcatataagcatttatgtataagttattttttcgaaaaaagatacaataaagt 9279417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 422
Target Start/End: Complemental strand, 37689509 - 37689454
Alignment:
Q  367 ataagctattttttataacaaac-ataaaataaagttaaactattttcatataagct 422  Q
    ||||||||||||| ||||||||  ||||| |||||||||| ||||||||||||||||    
T  37689509 ataagctattttt-ataacaaaagataaagtaaagttaaattattttcatataagct 37689454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 41028996 - 41028921
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagct 422  Q
    ||||||||||||| |||||||||||||| ||| |||||| ||| | |||||||||| || || |||||| |||||||    
T  41028996 tatcatataagtgcttatgtataagcta-tttctataacaaaagaaaaaataaagtcaatctgttttcaaataagct 41028921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 426
Target Start/End: Original strand, 42809242 - 42809305
Alignment:
Q  363 atgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagctgttt 426  Q
    ||||||||||||||| | ||||||||  |||||||| ||||||| | ||||||||||||||||||    
T  42809242 atgtataagctatttct-ataacaaaagataaaatatagttaaattgttttcatataagctgttt 42809305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 347 - 422
Target Start/End: Complemental strand, 43116573 - 43116498
Alignment:
Q  347 tatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcatataagct 422  Q
    ||||||| |||||||||||| ||||||| ||| |||||| ||| ||||||| || | |||| |||||||||||||||    
T  43116573 tatcatacaagtgtttatgtgtaagcta-tttctataacaaaagataaaatcaaatcaaacaattttcatataagct 43116498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 333 - 416
Target Start/End: Complemental strand, 44284217 - 44284134
Alignment:
Q  333 ataccataagcgcgtatcatataagtgtttatgtataagctattttttataac-aaacataaaataaagttaaactattttcata 416  Q
    ||||||||||||  ||||||||||||  | |||||||||||| ||| |||||| ||| |||||| ||||| ||||| ||||||||    
T  44284217 ataccataagcgattatcatataagtactaatgtataagcta-tttctataacaaaaaataaaacaaagtcaaactgttttcata 44284134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 514
Target Start/End: Original strand, 50211805 - 50211845
Alignment:
Q  474 ataagttattttcataagctctctcaaatagtcttacaagt 514  Q
    ||||||| |||||||||| ||||||||| ||||||||||||    
T  50211805 ataagttgttttcataagttctctcaaacagtcttacaagt 50211845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 6600 - 6568
Alignment:
Q  390 ataaaataaagttaaactattttcatataagct 422  Q
    |||||||||||| ||||||||||||||||||||    
T  6600 ataaaataaagtcaaactattttcatataagct 6568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 13620 - 13588
Alignment:
Q  390 ataaaataaagttaaactattttcatataagct 422  Q
    |||||||||||| ||||||||||||||||||||    
T  13620 ataaaataaagtcaaactattttcatataagct 13588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 361 - 436
Target Start/End: Complemental strand, 21409 - 21334
Alignment:
Q  361 ttatgtataagctattttttataacaaac-ataaaataaagttaaactattttcatataagctgtttctataagcta 436  Q
    ||||||||||||||||||| |||  |||  |||||||||||||||| | ||||| ||||||||||||  ||||||||    
T  21409 ttatgtataagctattttt-ataggaaaagataaaataaagttaaattgttttcgtataagctgttttcataagcta 21334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University