View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12519_low_14 (Length: 229)
Name: NF12519_low_14
Description: NF12519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12519_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 41557736 - 41557930
Alignment:
| Q |
18 |
aaaatcaccgatcatcctcatcgatcgattcaaaaatcactgtactctttcagattccaactggttcgttccattcttatctcaaatctcacattcatcg |
117 |
Q |
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| T |
41557736 |
aaaatcaccgatcatcctcatcgatcgattcaaaaatcactgtactctttcagattccaactggttcgttccattcttatctcaaatctcacattcatca |
41557835 |
T |
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| Q |
118 |
tttatcgcaatcatcatttttgtttaatttctatgttctttacagcttctgtggctccgatttgccggttggaaaggaagttctaacactttgca |
212 |
Q |
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| T |
41557836 |
tttatcgcaatcatcatttttgtttaatttctatgttcttcacagcttctgtggctccgatttgccggttggaaaggaagttctaacactttgca |
41557930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 26 - 212
Target Start/End: Original strand, 41541988 - 41542166
Alignment:
| Q |
26 |
cgatcatcctcatcgatcgattcaaaaatcactgtactctttcagattccaactggttcgttccattcttatctcaaatctcacattcatcgtttatcgc |
125 |
Q |
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||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||| || ||| ||| |
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| T |
41541988 |
cgatcattctcatcaatcgattcagaaatcactgtactctttcagattccaactggttcgttctcttctaatctcaaatc--------atgatttgtcgt |
41542079 |
T |
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| Q |
126 |
aatcatcatttttgtttaatttctatgttctttacagcttctgtggctccgatttgccggttggaaaggaagttctaacactttgca |
212 |
Q |
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| T |
41542080 |
aatcatcatttttgtttaatttctatgttcttcacagcttctgtggctccgatttgccggtcggaaatgaagttctaacactttgca |
41542166 |
T |
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