View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12519_low_2 (Length: 503)
Name: NF12519_low_2
Description: NF12519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12519_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 35228264 - 35228045
Alignment:
| Q |
1 |
tcaagtggaattttgaaaggaaaatgtggaatttatttagatcatacagtgactatagatggttatggcaccagtgatgatggtgtgaagtattggctag |
100 |
Q |
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| T |
35228264 |
tcaagtggaattttgaaaggaaaatgtggaattgatttagatcatacagttactatagttggttatggtaccagtgatgatggtgtgaagtattggctag |
35228165 |
T |
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| Q |
101 |
tgaaaaattcatggggtactaaatggggtgagaagggatatatcaagattaagagagacgtgcatgccaaggaaggttcatgtggaattgctatggttcc |
200 |
Q |
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| T |
35228164 |
tgaaaaattcatggggtactaaatggggtgagaaaggatatatcaagattaagagagacgtgcatgccaaggaaggttcatgtggaattgctatggttcc |
35228065 |
T |
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| Q |
201 |
cacttatccaattgtttaag |
220 |
Q |
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| T |
35228064 |
cacttatccaattgtttaag |
35228045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 378 - 486
Target Start/End: Complemental strand, 35227961 - 35227853
Alignment:
| Q |
378 |
tgtaatacttgagatttttctcatgaattatatgaattgagtgagtttgtttcccttcaaaatgagaactaagttaccattggtatcactcaataaccca |
477 |
Q |
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| T |
35227961 |
tgtaatacttgagatttttctcatgaatgatatgaaatgagtgagtttgtttcacttcaaaatgagaactaagttaccattggtatcactcaataaccca |
35227862 |
T |
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| Q |
478 |
ttactatat |
486 |
Q |
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| T |
35227861 |
ttactatat |
35227853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 35228046 - 35227963
Alignment:
| Q |
260 |
agtcttcttatactagtttgatgaattgcttgtgtttgaattagttatgtgtgtgagtgtttgaataaatagctagggtgtgta |
343 |
Q |
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| T |
35228046 |
agtcttcttatactagtttgatgaattgcttgtgtttgaattagttatgtgtgtgagtgtttgaataaatagctagggtgtgta |
35227963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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