View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12519_low_3 (Length: 495)
Name: NF12519_low_3
Description: NF12519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12519_low_3 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 258 - 495
Target Start/End: Original strand, 4871981 - 4872216
Alignment:
| Q |
258 |
ggccagcctaaagctcttctgacaggaaaaaattatttctcaaagttagctttaggcaccactcgttatcgagtcgatcgacagtgtaagtaattataat |
357 |
Q |
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| T |
4871981 |
ggccagcctaaagctctt--gacaggaaaaagttatttctcaaagttagctttaggtaccactcattatcgagtcgatcgacagtgtaagtaattataat |
4872078 |
T |
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| Q |
358 |
atgcagcataattttacctgacatctagcatcatcgagactatacatgatttttaggtgtctctttaactttaaaagaagttgcaacgcaatcgcagata |
457 |
Q |
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| T |
4872079 |
atgcagcataattttacctgacatctagcatcatcgagactatacatgatttttaggtgtctctttaactttaaaagaagttgcaacgcaatcgcagata |
4872178 |
T |
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| Q |
458 |
aacagtcagcctgcagaagcatagtgaacaaaacaaac |
495 |
Q |
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| T |
4872179 |
aacagtcagcctgcagaagcatagtgaacaaaacaaac |
4872216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 4871723 - 4871920
Alignment:
| Q |
8 |
gttcactgggagaataagcctgaatgaaaatgggaaaacatcccaaagagagactacggttagcatgctatttcatccctctagtcaaaaggaacacaat |
107 |
Q |
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| T |
4871723 |
gttcactgggagaataagcctgaatgaaaatgggaaaacatcccaaagagagactacggttagcatgctatttcatccctctagtcaaaaggaacacaat |
4871822 |
T |
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| Q |
108 |
gtttgaatgtctgtaattgatcaaggccggaccaaga------ccactaaaacaagggctttaagcctcaaaaatttggttagcttagtattactgat |
199 |
Q |
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| T |
4871823 |
gttcgaatgtctgtaattgatcaaggccggaccaagacaaaagctactaaaacaagggctttaagcctcaaaattttggttagcttagtattactgat |
4871920 |
T |
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