View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12519_low_4 (Length: 494)
Name: NF12519_low_4
Description: NF12519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12519_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 10 - 483
Target Start/End: Original strand, 10561636 - 10562111
Alignment:
| Q |
10 |
agcaaaggtggtagggacagttctatgtattggtggagcggtagttttatcattttatcacgcaaaagtaattgatgtacctgaatcaagggttcattgg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10561636 |
agcaaaggtggtagggacagttctatgtattggtggagcggtagttttatcattttatcacgcaaaagtaattgatgtacctgaatcaagggttcattgg |
10561735 |
T |
|
| Q |
110 |
aattatgcagagaaacttgaacatggtcatcttaacttctctgctgcccaatcaacctcgcttctaggccctgtgctcttaattcttaatgctcttgttt |
209 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10561736 |
agttatgcagagaaacttgaacatggtcatcttaacttctctgctgcccaatcaacctcacttctaggccctgtgctcttaattcttaatgctcttgttt |
10561835 |
T |
|
| Q |
210 |
ggtcactatggtttatcattcaagtaagcatcatatgcatcatgcattatattagtatcatacaacatttagggtttagggttgagctaagggattaaag |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
10561836 |
ggtcactatggtttatcattcaagtaagcatcatatgcatcatgcattatattaatatcatacaacatttagggtttagggctgagctaagggattaaag |
10561935 |
T |
|
| Q |
310 |
atctaaggagttaggtttagggttcgaatcttaacgaggaaaatgatccctataaaaatccaaaactaatctcatttcttagttgcaacattgtccatta |
409 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||| |
|
|
| T |
10561936 |
agttaaggagttaggtttagggttcgaatcttaacgaggaaaacgatccctataaaaatccaaaattaatctcaattcttagtcgcaacattttccatta |
10562035 |
T |
|
| Q |
410 |
gcatttttaggaat-aaaaaatgcttacgg-aaattttacaaaaactaaaataggtgatggtaaatattactggac |
483 |
Q |
| |
|
||||||||| ||| |||||||||||| || |||||||||||||||||||| || |||||| |||||||| ||||| |
|
|
| T |
10562036 |
gcatttttaataataaaaaaatgcttatggaaaattttacaaaaactaaaaaagttgatggaaaatattattggac |
10562111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 45936283 - 45936516
Alignment:
| Q |
10 |
agcaaaggtggtagggacagttctatgtattggtggagcggtagttttatcattttatcacgcaaaagtaattgatgtacctgaatcaagggttcattgg |
109 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||| || || |||||||||| || | | ||||||||| | |||| ||||||| |||||||| |
|
|
| T |
45936283 |
agcaaaagtggtagggacagttctatgtgttggtggagcgatacttctatcattttaccatggacaagtaattggtataccagaatcaaaaattcattgg |
45936382 |
T |
|
| Q |
110 |
aattatgcagagaaacttgaacatggtcatcttaacttctctgctgcccaatc----aacctcgcttctaggccctgtgctcttaattcttaatgctctt |
205 |
Q |
| |
|
| |||||| |||| | ||||| | | | ||||| ||||||||||||||| || | ||||||||||||| | ||||||||||| | ||||||| |
|
|
| T |
45936383 |
agttatgctgagagaattgaaggagctggtgataactcctctgctgcccaatctaataatgt-gcttctaggccctattctcttaattctcagtgctctt |
45936481 |
T |
|
| Q |
206 |
gtttggtcactatggtttatcattcaagtaagcat |
240 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
45936482 |
atttggtcactatggttcatcattcaagtaagcat |
45936516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University