View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12519_low_5 (Length: 425)
Name: NF12519_low_5
Description: NF12519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12519_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 15 - 414
Target Start/End: Original strand, 2842522 - 2842922
Alignment:
| Q |
15 |
tggacatcaagaacatcagactcagtatcataaaaggagctatgcaaatcatcacatgctcgatccttgtattcagtgtttttatccaactcttcatgtt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2842522 |
tggacatcaagaacatcagactcagtatcataaaaggagctatgcaaatcatcacatgctcgatccttgtattcagtgtttttatccaactcttcatgtt |
2842621 |
T |
|
| Q |
115 |
ctgtattattcgtacaatcttgcttaacaataggtacagtactttcgatctgtgatggatcatcacatgtttcaaatgaaagtggcgagcttcgtttcca |
214 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2842622 |
ctgtattattggtacaatcttgcttaacaataagtacagtactttcgatctgtgatggatcatcacatgtttcaaatgaaagtggcgagcttcgtttcca |
2842721 |
T |
|
| Q |
215 |
ttcactaagccgcacctctgctgacttcgaatgcaactcgcaactttctgtcaaactcatttgcctataagtttcaagttccttttcc-aaaaaagattc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
2842722 |
ttcactaagccgcacctctgctgacttcgaatgcaactcgcaactttctgtcaaactcatttgcctaaaagtttcaagttccttttccaaaaaaagattt |
2842821 |
T |
|
| Q |
314 |
tccctttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagctctttcttcaattaacctctcatattgtctgatgtcca |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||| || |||| |
|
|
| T |
2842822 |
tccctttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagaaactctttcttcaattaacctctcgtattgtctcatttcca |
2842921 |
T |
|
| Q |
414 |
t |
414 |
Q |
| |
|
| |
|
|
| T |
2842922 |
t |
2842922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 277 - 414
Target Start/End: Original strand, 2838683 - 2838821
Alignment:
| Q |
277 |
gcctataagtttcaagttccttttccaaaaa-agattctccctttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagc |
375 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2838683 |
gcctataactttcaagttccttttccaaaaagagattctccttttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagc |
2838782 |
T |
|
| Q |
376 |
tctttcttcaattaacctctcatattgtctgatgtccat |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
2838783 |
tctttcttcaattaacctctcatattgtctcatttccat |
2838821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 2838500 - 2838590
Alignment:
| Q |
19 |
catcaagaacatcagactcagtatcataaaaggagctatgcaaatcatcacatgctcgatccttgtattcagtgtttttatccaactcttc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||||| || ||| ||||||||| || | |||||| |||| |||||| |
|
|
| T |
2838500 |
catcaagaacatcagactcagtatcataaaaggatctatgcatatcattgcacgcttgatccttgtgttgactgttttcctccacctcttc |
2838590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 2838645 - 2838679
Alignment:
| Q |
164 |
ctgtgatggatcatcacatgtttcaaatgaaagtg |
198 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
2838645 |
ctgtgatggatcatcacaagtttcaaatgaaagtg |
2838679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University