View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12519_low_7 (Length: 320)
Name: NF12519_low_7
Description: NF12519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12519_low_7 |
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| [»] scaffold0122 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 3180848 - 3180522
Alignment:
| Q |
1 |
acaccggacacgacactgacacgtctacaatgataaaactttaagaaaatgacataggttatgattccgggacacaccttcaatcagaagtgtcagtgca |
100 |
Q |
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| T |
3180848 |
acaccggacaggacactgacacgtctacaatgataaaattttaagaaaatgacataggttatgattccgggacacacgttcaatcagaagtgtcagtgca |
3180749 |
T |
|
| Q |
101 |
atagagatcatgacaaatgatgctcacaattatacaggaaaacatacctctga-----------------ggagcaagatatggcagatgaatgaaataa |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3180748 |
atagagatcatgacaaatgatgctcacaattatacaggaaaacatacctctgaggagacctatcccctgaggagcaagatatggcagatgaatgaaataa |
3180649 |
T |
|
| Q |
184 |
ctatcaagtgaagttgtgatagagatttcaccttttatttctccaataggctaaaaaaggtcaaattgaatcacaagcataatagattgcagtaatccag |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
3180648 |
ctatcaagtgaagttgtgatagagatttcaccttttatttctccaataggctaaaaaaggtcaagttgaatcacaagcataatagattgcagtaacccag |
3180549 |
T |
|
| Q |
284 |
tggacat---gtgattatatacaaact |
307 |
Q |
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||||||| ||||||||||||||||| |
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| T |
3180548 |
tggacatatagtgattatatacaaact |
3180522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 27 - 153
Target Start/End: Original strand, 20946556 - 20946682
Alignment:
| Q |
27 |
acaatgataaaactttaagaaaatgacataggttatgattccgggacacaccttcaatcagaagtgtcagtgcaatagagatcatgacaaatgatgctca |
126 |
Q |
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| T |
20946556 |
acaatgataaaattttgagaaaatgacataagttatgattttgggacacaccttagatcagaagcgtcggtgcaatagatatcataacaaatgatgctca |
20946655 |
T |
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| Q |
127 |
caattatacaggaaaacatacctctga |
153 |
Q |
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| T |
20946656 |
caattatagaggaaaacatacctctga |
20946682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 151 - 301
Target Start/End: Original strand, 20959650 - 20959809
Alignment:
| Q |
151 |
tgaggagcaagatatggcagatgaatgaaataactatcaagtga-------agttgt-gatagagatttcaccttttatttctccaataggctaaaaaag |
242 |
Q |
| |
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||||||||||||||||||| ||||| |||||||||| ||||||| || || |||||||||||||||| |||| |||||||||||| | ||||| |
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| T |
20959650 |
tgaggagcaagatatggcaaatgaaagaaataactaccaagtgagtgatagagaagttgatagagatttcacctcttatatctccaataggcaacaaaag |
20959749 |
T |
|
| Q |
243 |
gtcaaattgaatcacaagcataatagattgcagtaatccagtggacat-gtgattatata |
301 |
Q |
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| T |
20959750 |
gacaaattgaaccaaaagcataatagattgcagtaatcaagtggacatagtgattatata |
20959809 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 106
Target Start/End: Original strand, 25956525 - 25956563
Alignment:
| Q |
68 |
cgggacacaccttcaatcagaagtgtcagtgcaatagag |
106 |
Q |
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| T |
25956525 |
cgggacacgccttcaatcagaagtgtccgtgcaatagag |
25956563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 26178564 - 26178610
Alignment:
| Q |
68 |
cgggacacaccttcaatcagaagtgtcagtgcaatagagatcatgac |
114 |
Q |
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| T |
26178564 |
cgggacataccttcaatcagaagtgtccgtgcatcagagatcatgac |
26178610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 785420 - 785384
Alignment:
| Q |
70 |
ggacacaccttcaatcagaagtgtcagtgcaatagag |
106 |
Q |
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| T |
785420 |
ggacacaccttcaatcagaagtgtccgtgcaacagag |
785384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 34197199 - 34197235
Alignment:
| Q |
70 |
ggacacaccttcaatcagaagtgtcagtgcaatagag |
106 |
Q |
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| T |
34197199 |
ggacacaccttcaactagaagtgtcagtgcaatagag |
34197235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 101
Target Start/End: Complemental strand, 39619081 - 39619047
Alignment:
| Q |
67 |
ccgggacacaccttcaatcagaagtgtcagtgcaa |
101 |
Q |
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|||||||||||||||||||||||||||| |||||| |
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| T |
39619081 |
ccgggacacaccttcaatcagaagtgtccgtgcaa |
39619047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0122 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0122
Description:
Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 10283 - 10247
Alignment:
| Q |
70 |
ggacacaccttcaatcagaagtgtcagtgcaatagag |
106 |
Q |
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||||||||||||||||||||||||| |||||| |||| |
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| T |
10283 |
ggacacaccttcaatcagaagtgtctgtgcaagagag |
10247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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