View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12519_low_9 (Length: 256)

Name: NF12519_low_9
Description: NF12519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12519_low_9
NF12519_low_9
[»] chr3 (8 HSPs)
chr3 (5-238)||(33609121-33609354)
chr3 (4-234)||(33618295-33618525)
chr3 (5-177)||(33627511-33627683)
chr3 (84-189)||(33588484-33588589)
chr3 (84-189)||(33595656-33595761)
chr3 (84-189)||(33602787-33602892)
chr3 (84-174)||(33562979-33563069)
chr3 (14-177)||(33622494-33622657)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 238
Target Start/End: Original strand, 33609121 - 33609354
Alignment:
Q  5 gagtgagatgaacttattaagtcaatagaacttgcaaaatcggttaaccaagaggcctttaaaaccatattaaaaagggaatatcgacctcacttggtga 104  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  33609121 gagttagaagaacttattaagtcaatagaacttgcaaaatcggttaaccaagagccctttaaaaccatattaaaaagggagtatcgacctcacttggtga 33609220  T
Q  105 tggcatttgcaatcccatttttccaacaacttaccgggatcaacatcgtcgctttctattcacctaacctcttccattctgtgggcttgggacgtgacgg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33609221 tggcatttgcaatcccatttttccaacaacttaccgggatcaacatcgtcgctttctattcacctaacctcttccattctgtgggcttgggacgtgacgg 33609320  T
Q  205 cgctttaatttccgccattgtacttggatccgtt 238  Q
    ||||||||||||||||||||||||||||||||||    
T  33609321 cgctttaatttccgccattgtacttggatccgtt 33609354  T

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Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 4 - 234
Target Start/End: Original strand, 33618295 - 33618525
Alignment:
Q  4 cgagtgagatgaacttattaagtcaatagaacttgcaaaatcggttaaccaagaggcctttaaaaccatattaaaaagggaatatcgacctcacttggtg 103  Q
    ||||| ||| |||||||| ||||  | |||| |||| ||||| ||  | |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33618295 cgagttagaagaacttatcaagtggacagaaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtg 33618394  T
Q  104 atggcatttgcaatcccatttttccaacaacttaccgggatcaacatcgtcgctttctattcacctaacctcttccattctgtgggcttgggacgtgacg 203  Q
    ||||||||||||||||| ||||||||||| ||||| |||||||| || || || || |||||||| |||||||| || |||||||| || ||||  ||||    
T  33618395 atggcatttgcaatcccgtttttccaacagcttacagggatcaatattgtagccttttattcacccaacctctttcactctgtgggttttggacacgacg 33618494  T
Q  204 gcgctttaatttccgccattgtacttggatc 234  Q
    | |||||| ||||||||||| ||||||||||    
T  33618495 gagctttactttccgccattatacttggatc 33618525  T

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Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 177
Target Start/End: Original strand, 33627511 - 33627683
Alignment:
Q  5 gagtgagatgaacttattaagtcaatagaacttgcaaaatcggttaaccaagaggcctttaaaaccatattaaaaagggaatatcgacctcacttggtga 104  Q
    |||| ||| |||||||||| ||||| | || ||||||||||  |  | |||||| |||||||||||||||| |||||||| ||||||||||||||||| |    
T  33627511 gagttagaagaacttattaggtcaacaaaaattgcaaaatcactgcaacaagagccctttaaaaccatattcaaaagggagtatcgacctcacttggtaa 33627610  T
Q  105 tggcatttgcaatcccatttttccaacaacttaccgggatcaacatcgtcgctttctattcacctaacctctt 177  Q
    ||||  | |||||||| ||||| |||||| |||| |||||||||||  | |||||||||||||||||||||||    
T  33627611 tggcgatagcaatcccgttttttcaacaagttacagggatcaacattattgctttctattcacctaacctctt 33627683  T

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Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 84 - 189
Target Start/End: Original strand, 33588484 - 33588589
Alignment:
Q  84 aatatcgacctcacttggtgatggcatttgcaatcccatttttccaacaacttaccgggatcaacatcgtcgctttctattcacctaacctcttccattc 183  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| |||||  |||| ||||||||||| ||||||||||||||||| |||||||| || ||    
T  33588484 aatatcgacctcacttggtcatggcattttcaatcccattttttcaacagtttacagggatcaacattgtcgctttctattcaccaaacctctttcaatc 33588583  T
Q  184 tgtggg 189  Q
    ||||||    
T  33588584 tgtggg 33588589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 84 - 189
Target Start/End: Original strand, 33595656 - 33595761
Alignment:
Q  84 aatatcgacctcacttggtgatggcatttgcaatcccatttttccaacaacttaccgggatcaacatcgtcgctttctattcacctaacctcttccattc 183  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| |||||  |||| ||||||||||| ||||||||||||||||| |||||||| || ||    
T  33595656 aatatcgacctcacttggtcatggcattttcaatcccattttttcaacagtttacagggatcaacattgtcgctttctattcaccaaacctctttcaatc 33595755  T
Q  184 tgtggg 189  Q
    ||||||    
T  33595756 tgtggg 33595761  T

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Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 84 - 189
Target Start/End: Original strand, 33602787 - 33602892
Alignment:
Q  84 aatatcgacctcacttggtgatggcatttgcaatcccatttttccaacaacttaccgggatcaacatcgtcgctttctattcacctaacctcttccattc 183  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| |||||  |||| ||||||||||| ||||||||||||||||| |||||||| || ||    
T  33602787 aatatcgacctcacttggtcatggcattttcaatcccattttttcaacagtttacagggatcaacattgtcgctttctattcaccaaacctctttcaatc 33602886  T
Q  184 tgtggg 189  Q
    ||||||    
T  33602887 tgtggg 33602892  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 174
Target Start/End: Original strand, 33562979 - 33563069
Alignment:
Q  84 aatatcgacctcacttggtgatggcatttgcaatcccatttttccaacaacttaccgggatcaacatcgtcgctttctattcacctaacct 174  Q
    |||||||||||||||||||||| ||| |||| || ||  |||| |||||||| || ||||||||||| || || |||||| ||||||||||    
T  33562979 aatatcgacctcacttggtgatagcagttgctattccgctttttcaacaactcacggggatcaacatggttgcattctatgcacctaacct 33563069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 177
Target Start/End: Original strand, 33622494 - 33622657
Alignment:
Q  14 gaacttattaagtcaatagaacttgcaaaatcggttaaccaagaggcctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggcatttg 113  Q
    |||| ||||||||||| | || ||| |||||| || ||  ||||  |||||||||||||| ||||||| || |||| ||||||  |  | ||||| || |    
T  33622494 gaacatattaagtcaacacaaattgtaaaatcagtaaaaaaagatccctttaaaaccatactaaaaagagagtatcaacctcagattttaatggccttag 33622593  T
Q  114 caatcccatttttccaacaacttaccgggatcaacatcgtcgctttctattcacctaacctctt 177  Q
    ||||| | | |||| ||||  |||| |||| |||||| || |||||||||||||||||||||||    
T  33622594 caatctcgtgtttcgaacatgttacagggaacaacattgttgctttctattcacctaacctctt 33622657  T

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