View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1251_high_1 (Length: 571)
Name: NF1251_high_1
Description: NF1251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1251_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 29 - 545
Target Start/End: Original strand, 39966711 - 39967226
Alignment:
| Q |
29 |
agtattaacaagaaaagcttcggtaacaattcatctcataccatatcacttataaataaaaatttaataagatttgctaaatgattaagagtgagttcct |
128 |
Q |
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| T |
39966711 |
agtattaacaagaaaagcttccgtaacaattcatctcataccatatcacttataaataaaaatttaataagatttgctaaatgattaagagtgagttcct |
39966810 |
T |
|
| Q |
129 |
ggagtactagtttacatcagaaagaggcaaaaaatacaatatcacctcgtctttgcatatgattataagcagacaaaaagcagagaacaaatggcatggt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39966811 |
ggagtactagtttacatcagaaagaggcaaaaaatacaatatcacctcgtctttgcatatgattataagcagacaaaaagcagagaacaaatggcatggt |
39966910 |
T |
|
| Q |
229 |
tacagacacggtagcagacatgacaatatgaaaagtattagaccatctcctttcttgaagagcccaacgtgtattgacaaagtgagtaacaccatccacc |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39966911 |
tacagacacggtagcagacatgacaatatgaaaagtattagaccatctcctttcttgaagagcccaacgtgtattgacaaagtgagtaacactatccacc |
39967010 |
T |
|
| Q |
329 |
atcattgctaccacattttttatcatcattgaacatcaatgtgtgcttgttgaagaggaataaggaatattgttgtgatgatgattgagaaaagttaagt |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39967011 |
atcattgctaccacattttttatcatcattgaacatcaatgtgtgcttgttgaagaggaataaggaatattgttgtgatgatgattgagaaaagttaagt |
39967110 |
T |
|
| Q |
429 |
ataataaaggaagagaatcgattctaggtttgtgcttacaggaactggcagtttataaagagacgttgtttccgggatgtttcctcaattttatcttttg |
528 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39967111 |
ataataaaggaagagaatcgattctaggtttgtgcttacgggaactggcagtttataaagagacgttgtttccgggatgtttcctcaattttatcttttg |
39967210 |
T |
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| Q |
529 |
ttttttgagggaaacgg |
545 |
Q |
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|||||||||||||||| |
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| T |
39967211 |
-tttttgagggaaacgg |
39967226 |
T |
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