View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1251_high_12 (Length: 260)
Name: NF1251_high_12
Description: NF1251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1251_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 31207115 - 31207344
Alignment:
| Q |
1 |
aagcttgcagcaaggaaagattcttgatttttgtgcttccatcgtttggtttggtcaaatacaagcaaggaaagaaactttctgttgggtcccacatgca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31207115 |
aagcttgcagcaaggaaagattcttgatttttgtgcttccatcgtttggtttggtcaaatacaagcaaggaaagaaactttctgctgggtcccacatgca |
31207214 |
T |
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| Q |
101 |
aaatatttcccctctcttttggacagaaagccttggatatcctgaaataacataaatgtctccactatatataannnnnnnaagccacttctctttatca |
200 |
Q |
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|||| |||||||||| ||||| || |||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31207215 |
aaatgtttcccctctgttttgaacggaaagccttggaaatcctgaaatgacataaatgtctccactatatat--tttttttaagccacttctctttatca |
31207312 |
T |
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| Q |
201 |
accataaattctatcaacacaatatcataaat |
232 |
Q |
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|||||||||| ||||||||||||||||||||| |
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| T |
31207313 |
accataaattttatcaacacaatatcataaat |
31207344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 41054751 - 41054542
Alignment:
| Q |
1 |
aagcttgcagcaaggaaagattcttgatttttgtgcttccatcgtttggtttggtcaaatacaagcaaggaaagaaactttctgttgggtcccacatgca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41054751 |
aagcttgcagcaaggaaagattcttgatttttgtgcttccatcgtttggtttggtcaaatacaagcaaggaaagaaactttctgttgggtcccacatgca |
41054652 |
T |
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| Q |
101 |
aaatatttcccctctcttttggacagaaagccttggatatcctgaaataacataaatgtctccactatatataannnnnnnaagccacttctctttatca |
200 |
Q |
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|||| |||||||||| |||||||| |||| ||||||| |||||||||| ||||||||||||||||||||||| | ||||||||| ||||||||| |
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| T |
41054651 |
aaatgtttcccctctgttttggacggaaaaccttggaaatcctgaaatgacataaatgtctccactatatat-acttttttaagccacttttctttatca |
41054553 |
T |
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| Q |
201 |
accataaattc |
211 |
Q |
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|||||| |||| |
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| T |
41054552 |
accatacattc |
41054542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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