View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1251_high_2 (Length: 416)

Name: NF1251_high_2
Description: NF1251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1251_high_2
NF1251_high_2
[»] chr5 (5 HSPs)
chr5 (13-388)||(39575538-39575913)
chr5 (13-387)||(39571532-39571906)
chr5 (22-362)||(2326899-2327242)
chr5 (35-174)||(4145067-4145206)
chr5 (256-308)||(3562125-3562177)
[»] chr8 (4 HSPs)
chr8 (37-358)||(9846270-9846591)
chr8 (36-362)||(9841190-9841516)
chr8 (36-147)||(9902143-9902254)
chr8 (310-370)||(9859917-9859977)
[»] chr3 (2 HSPs)
chr3 (13-115)||(49388317-49388422)
chr3 (250-352)||(49388099-49388201)
[»] chr1 (2 HSPs)
chr1 (206-234)||(5054880-5054908)
chr1 (206-370)||(46445364-46445528)


Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 13 - 388
Target Start/End: Original strand, 39575538 - 39575913
Alignment:
Q  13 aatatgaatcaaaactcaaatagtaagagttgtaaagagatttcaaaagtgctgctccctgaagacctgttgtttgatatcttcagtttggttcctctta 112  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39575538 aatataaatcaaaactcaaatagtaagagttgtaaagagattccaaaagtgctgctccctgaagacctgttgtttgatatcttcagtttggttcctctta 39575637  T
Q  113 attgcataattaactctacaagatatgtttgcaaaacatggggtacttctattcgcagctccgattttgctaaagtgtaccaacgcaatgggtgttctaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  39575638 attgcataattaactctacaagatatgtttgcaaaacatggggtacttctattcgaagctccgattttgctaaagtgtaccaacgcaatgggcgttctaa 39575737  T
Q  213 acttggtctttacgttgaaaaccgcatggaagaaagtagttcctatttcttggatattaaagatgatatgagtggtcagtttgaaaggattgatttagga 312  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  39575738 acttggtctttacgttgaaaagcgcatggaagaaagtagttcctatttcttggatattaaagatgatatgagtggtcaatttgaaaggattgatttggga 39575837  T
Q  313 acaccccaaacaatgggggatttaatcagtacttgtgatggcatattgctactttcgaatcgttgtagacaaaatt 388  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39575838 acaccccaaacaatgggagatttaatcagtacttgtgatggcatattgctactttcgaatcgttgtagacaaaatt 39575913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 387
Target Start/End: Original strand, 39571532 - 39571906
Alignment:
Q  13 aatatgaatcaaaactcaaatagtaagagttgtaaagagatttcaaaagtgctgctccctgaagacctgttgtttgatatcttcagtttggttcctctta 112  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||  | |||||||||||||| ||||||||||||||||    
T  39571532 aatataaatcaaaactcaaatagtaagagttgtaaagtgatttcaaagttgctgctccctgaagatttattgtttgatatctttagtttggttcctctta 39571631  T
Q  113 attgcataattaactctacaagatatgtttgcaaaacatggggtacttctattcgcagctccgattttgctaaagtgtaccaacgcaatgggtgttctaa 212  Q
    || || ||||||||||||||||||||||||||||| | ||||   || |||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  39571632 atagcctaattaactctacaagatatgtttgcaaatcttgggcggctactattcgcagctccgattttgctaaagtgtaccaacgcaatggtcgttctaa 39571731  T
Q  213 acttggtctttacgttgaaaaccgcatggaagaaagtagttcctatttcttggatattaaagatgatatgagtggtcagtttgaaaggattgatttagga 312  Q
    ||||||| ||||||||||||||||||||  | |||||||||| |||||||||||||||||||||||||||| | | || ||||||||||||||||| | |    
T  39571732 acttggtatttacgttgaaaaccgcatgtcaaaaagtagttcttatttcttggatattaaagatgatatgaataggcaatttgaaaggattgatttggaa 39571831  T
Q  313 acaccccaaacaatgggggatttaatcagtacttgtgatggcatattgctactttcgaatcgttgtagacaaaat 387  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  39571832 acacctcaaacaatgggggatttaatcagtacttgtgatggcatattgctactttcgaatggttgtagagaaaat 39571906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 362
Target Start/End: Complemental strand, 2327242 - 2326899
Alignment:
Q  22 caaaactcaaatagta---agagttgtaaagagatttcaaaagtgctgctccctgaagacctgttgtttgatatcttcagtttggttcctcttaattgca 118  Q
    ||||||||||||||||   |||||||||||  |||||||||  |||| || | ||||||| ||  |||| ||||||| | ||| |||||||||||||||     
T  2327242 caaaactcaaatagtactaagagttgtaaaatgatttcaaagttgcttctacttgaagacttgaggtttcatatctttacttttgttcctcttaattgcc 2327143  T
Q  119 taattaactctacaagatatgtttgcaaaacatggggtacttctattcgcagctccgattttgctaaagtgtaccaacgcaatgggtgttctaaacttgg 218  Q
    |  |||||||| |||| |||||   ||||   |||| | || ||||| |||||||| |||||||| |||  ||| ||||| |||    ||||||||||||    
T  2327142 tgcttaactctgcaaggtatgtaaacaaactgtgggctgctactattggcagctcccattttgctgaagcatacgaacgccatgcacattctaaacttgg 2327043  T
Q  219 tctttacgttgaaaaccgcatggaagaaagtagttcctatttcttggatattaaagatgatatgagtggtcagtttgaaaggattgatttaggaacaccc 318  Q
    |||||| ||||||||  ||||||||      | ||| |||||||||||  |||||||| || |||  |  || |||||||||| ||||||||||| |||     
T  2327042 tctttatgttgaaaattgcatggaaccggacaattcttatttcttggaatttaaagattatgtgaacgaccaatttgaaaggactgatttaggaatacct 2326943  T
Q  319 caaacaatgggggatttaatcagtacttgtgatggcatattgct 362  Q
      || |||||| ||| |||||  ||||||| |||| ||||||||    
T  2326942 tcaataatgggagatataatcgatacttgtaatggtatattgct 2326899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 174
Target Start/End: Original strand, 4145067 - 4145206
Alignment:
Q  35 gtaagagttgtaaagagatttcaaaagtgctgctccctgaagacctgttgtttgatatcttcagtttggttcctcttaattgcataattaactctacaag 134  Q
    ||||||||||||||| |||||||||  || |  ||||||||||| || ||||||||||| | |||||  | ||| |||| ||  |  |||||||| ||||    
T  4145067 gtaagagttgtaaagtgatttcaaagttgttaatccctgaagacttggtgtttgatatccttagttttctccctgttaaatgtctgcttaactctgcaag 4145166  T
Q  135 atatgtttgcaaaacatggggtacttctattcgcagctcc 174  Q
     |||||||||||| | |||| |||| ||||||||||||||    
T  4145167 gtatgtttgcaaatcttgggctactactattcgcagctcc 4145206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 3562177 - 3562125
Alignment:
Q  256 tatttcttggatattaaagatgatatgagtggtcagtttgaaaggattgattt 308  Q
    |||||||||||||||||||||||| | | |||||| |||||||||||||||||    
T  3562177 tatttcttggatattaaagatgatttaaatggtcactttgaaaggattgattt 3562125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 37 - 358
Target Start/End: Original strand, 9846270 - 9846591
Alignment:
Q  37 aagagttgtaaagagatttcaaaagtgctgctccctgaagacctgttgtttgatatcttcagtttggttcctcttaattgcataattaactctacaagat 136  Q
    ||||||||| ||| ||||||||   || |||| |||||| || || ||||||||||| | || ||||||| |||||| ||| | ||||| ||| |||| |    
T  9846270 aagagttgtgaagtgatttcaacgctgttgcttcctgaacacttggtgtttgatatccttaggttggttcatcttaactgcctgattaattctgcaaggt 9846369  T
Q  137 atgtttgcaaaacatggggtacttctattcgcagctccgattttgctaaagtgtaccaacgcaatgggtgttctaaacttggtctttacgttgaaaaccg 236  Q
    ||||||| ||| | |||| | || |||||  |||||||  ||||| | || ||| | || ||  ||   ||||||||| ||||||||| |||||||| ||    
T  9846370 atgtttgtaaagcttgggctgctactattgccagctccctttttgttgaaatgtgcgaaagccgtgcacgttctaaacctggtctttatgttgaaaatcg 9846469  T
Q  237 catggaagaaagtagttcctatttcttggatattaaagatgatatgagtggtcagtttgaaaggattgatttaggaacaccccaaacaatgggggattta 336  Q
    ||    | | |||||||| |||||||||||  ||||||||||| ||| ||  || |||||||||| |||||| |||||||| |||  ||||||| || ||    
T  9846470 cacaacacagagtagttcttatttcttggaatttaaagatgatgtgaatgaccaatttgaaaggactgatttgggaacacctcaaggaatggggaatata 9846569  T
Q  337 atcagtacttgtgatggcatat 358  Q
    |||| ||| |||||||||||||    
T  9846570 atcaatacgtgtgatggcatat 9846591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 36 - 362
Target Start/End: Original strand, 9841190 - 9841516
Alignment:
Q  36 taagagttgtaaagagatttcaaaagtgctgctccctgaagacctgttgtttgatatcttcagtttggttcctcttaattgcataattaactctacaaga 135  Q
    |||||||||||||| |||||||||  || |||| | ||||||| |||||||| || || | | ||||||||||||||  ||| |  |||||||| |||||    
T  9841190 taagagttgtaaagtgatttcaaagttgttgcttcttgaagacttgttgtttcatgtccttactttggttcctcttacctgcttgtttaactctgcaaga 9841289  T
Q  136 tatgtttgcaaaacatggggtacttctattcgcagctccgattttgctaaagtgtaccaacgcaatgggtgttctaaacttggtctttacgttgaaaacc 235  Q
    |||||||||||| | |||| | || |||||   ||||||  ||||||| |||  ||| |||||  |    ||||||| | |||||| || ||| ||||      
T  9841290 tatgtttgcaaaccttgggctgctactattgcaagctccccttttgctgaagcatacgaacgccgtccacgttctaagcctggtctatatgttcaaaatt 9841389  T
Q  236 gcatggaagaaagtagttcctatttcttggatattaaagatgatatgagtggtcagtttgaaaggattgatttaggaacaccccaaacaatgggggattt 335  Q
    |||    |  ||||||||| |||||||||||  ||||||||||| ||| ||  || |||||||||| ||||||||||||||| |||| | | ||  || |    
T  9841390 gcaccacaacaagtagttcttatttcttggaatttaaagatgatgtgaatgaccaatttgaaaggactgatttaggaacacctcaaaaactaggatatgt 9841489  T
Q  336 aatcagtacttgtgatggcatattgct 362  Q
    |||| ||| ||||||||||||||||||    
T  9841490 aatcggtagttgtgatggcatattgct 9841516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 147
Target Start/End: Original strand, 9902143 - 9902254
Alignment:
Q  36 taagagttgtaaagagatttcaaaagtgctgctccctgaagacctgttgtttgatatcttcagtttggttcctcttaattgcataattaactctacaaga 135  Q
    |||||||||| |||  |||||||| ||| |||| ||||||||| || ||||| ||||| | | ||||||||||||| ||||  | || |||||| ||||     
T  9902143 taagagttgtgaagtaatttcaaaggtgttgcttcctgaagacttgatgttttatatccttactttggttcctcttgattgtctgatcaactctgcaagg 9902242  T
Q  136 tatgtttgcaaa 147  Q
    ||||||||||||    
T  9902243 tatgtttgcaaa 9902254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 370
Target Start/End: Original strand, 9859917 - 9859977
Alignment:
Q  310 ggaacaccccaaacaatgggggatttaatcagtacttgtgatggcatattgctactttcga 370  Q
    |||||||| ||||  ||||| ||| ||||| |||||||||||||| ||||||| |||||||    
T  9859917 ggaacacctcaaaggatgggagatataatcggtacttgtgatggcttattgctgctttcga 9859977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 49388422 - 49388317
Alignment:
Q  13 aatatgaatcaaaactcaaatagta---agagttgtaaagagatttcaaaagtgctgctccctgaagacctgttgtttgatatcttcagtttggttcctc 109  Q
    |||||||| ||||||||||||||||   |||||| ||||| |||||||||  |||| |||||||||||| ||||| ||  |||||| | |||||||||||    
T  49388422 aatatgaaccaaaactcaaatagtactgagagttataaagtgatttcaaagctgcttctccctgaagacttgttgctttgtatctttattttggttcctc 49388323  T
Q  110 ttaatt 115  Q
    ||||||    
T  49388322 ttaatt 49388317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 250 - 352
Target Start/End: Complemental strand, 49388201 - 49388099
Alignment:
Q  250 agttcctatttcttggatattaaagatgatatgagtggtcagtttgaaaggattgatttaggaacaccccaaacaatgggggatttaatcagtacttgtg 349  Q
    ||||| |||||||||||  | ||||||||| ||| ||| || ||||||| || |||||| |||||| | |||| ||||||| |||||||  |||||||||    
T  49388201 agttcttatttcttggaattcaaagatgatttgaatggccaatttgaaaagactgatttgggaacatctcaaaaaatggggcatttaataggtacttgtg 49388102  T
Q  350 atg 352  Q
    |||    
T  49388101 atg 49388099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 5054908 - 5054880
Alignment:
Q  206 gttctaaacttggtctttacgttgaaaac 234  Q
    |||||||||||||||||||||||||||||    
T  5054908 gttctaaacttggtctttacgttgaaaac 5054880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 370
Target Start/End: Original strand, 46445364 - 46445528
Alignment:
Q  206 gttctaaacttggtctttacgttgaaaaccgcatggaagaaagtagttcctatttcttggatattaaagatgatatgagtggtcagtttgaaaggattga 305  Q
    |||||||||||||||| || |||||||| | | || || || |  |||| |||||||||||  |||| |||||| |||  || || ||||||||| ||||    
T  46445364 gttctaaacttggtctgtatgttgaaaatctcgtgaaacaaggacgttcttatttcttggaatttaatgatgatgtgaacggccaatttgaaaggtttga 46445463  T
Q  306 tttaggaacaccccaaacaatgggggatttaatcagtacttgtgatggcatattgctactttcga 370  Q
    ||| |||| |||  |||   ||||  || |||| ||||||||||||||| ||||| | |||||||    
T  46445464 ttttggaatacctgaaaatctgggatatataattagtacttgtgatggcttattgtttctttcga 46445528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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