View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1251_high_4 (Length: 341)

Name: NF1251_high_4
Description: NF1251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1251_high_4
NF1251_high_4
[»] chr6 (2 HSPs)
chr6 (1-281)||(9412324-9412601)
chr6 (289-318)||(9412593-9412622)
[»] chr1 (2 HSPs)
chr1 (120-179)||(7561332-7561391)
chr1 (118-178)||(7555512-7555572)
[»] chr3 (1 HSPs)
chr3 (127-174)||(51120325-51120372)
[»] chr7 (1 HSPs)
chr7 (132-169)||(10616209-10616246)
[»] chr4 (4 HSPs)
chr4 (127-176)||(554097-554146)
chr4 (131-172)||(566754-566795)
chr4 (126-178)||(642341-642393)
chr4 (123-175)||(1537245-1537297)
[»] chr2 (1 HSPs)
chr2 (125-174)||(45244521-45244570)
[»] chr5 (1 HSPs)
chr5 (129-169)||(41886296-41886336)


Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 9412324 - 9412601
Alignment:
Q  1 taccgagaaaaggacctattccgttgttgtagaccgtaagtgagatgaaaagacggttggtgatggagagaaacaacttggagacaagcgagagagactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9412324 taccgagaaaaggacctattccgttgttgtagaccgtaagtgagatgacaagacggttggtgatggagagaaacaacttggagacaagcgagagagactt 9412423  T
Q  101 caagtcgcgatagttagcaccattgttgaggaatttgaagatactttcccaacattcatcaggtaaataaaaatcagcatcggcagaaacaaccgttgtt 200  Q
    ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||  |||||||||||||    
T  9412424 caactcgcgatagttagcaccatcgttgaggaatttgaagatactttcccaacattcatcaggtaaataaaaat---catcggcaacaacaaccgttgtt 9412520  T
Q  201 gtttttcgtcttcttttttgttgatgactgaactgcatagctgtgtctctggtgaatgatatttactatgaaagggttagg 281  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  9412521 gtttttcgtcttcttttttgttgatgactgaactgcatggctgtgtttctggtgaatgatatttactatgaaagggttagg 9412601  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 9412593 - 9412622
Alignment:
Q  289 agggttaggttttgcgcaagactgtgatga 318  Q
    ||||||||||||||||||||||||||||||    
T  9412593 agggttaggttttgcgcaagactgtgatga 9412622  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 7561332 - 7561391
Alignment:
Q  120 ccattgttgaggaatttgaagatactttcccaacattcatcaggtaaataaaaatcagca 179  Q
    |||||||||||||| ||||||| |  || |||||| ||||||||||||||||||||||||    
T  7561332 ccattgttgaggaacttgaagacatgtttccaacagtcatcaggtaaataaaaatcagca 7561391  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 7555512 - 7555572
Alignment:
Q  118 caccattgttgaggaatttgaagatactttcccaacattcatcaggtaaataaaaatcagc 178  Q
    |||| |||||||| |||||||||| |  || |||||||||||| |||||||||||| ||||    
T  7555512 caccgttgttgagaaatttgaagacaagttgccaacattcatcgggtaaataaaaagcagc 7555572  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 51120372 - 51120325
Alignment:
Q  127 tgaggaatttgaagatactttcccaacattcatcaggtaaataaaaat 174  Q
    ||||||||||||||| || ||||||||| |||||||||||||| ||||    
T  51120372 tgaggaatttgaagacacattcccaacagtcatcaggtaaatagaaat 51120325  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 10616209 - 10616246
Alignment:
Q  132 aatttgaagatactttcccaacattcatcaggtaaata 169  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  10616209 aatttgaagatacattcccaacactcatcaggtaaata 10616246  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 554097 - 554146
Alignment:
Q  127 tgaggaatttgaagatactttcccaacattcatcaggtaaataaaaatca 176  Q
    ||||||||||||||| |  |||||||||||||||||| || |||||||||    
T  554097 tgaggaatttgaagacaaattcccaacattcatcaggaaagtaaaaatca 554146  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 566754 - 566795
Alignment:
Q  131 gaatttgaagatactttcccaacattcatcaggtaaataaaa 172  Q
    ||||||||||| || ||||||||| |||||||||||||||||    
T  566754 gaatttgaagacacgttcccaacagtcatcaggtaaataaaa 566795  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 642341 - 642393
Alignment:
Q  126 ttgaggaatttgaagatactttcccaacattcatcaggtaaataaaaatcagc 178  Q
    ||||| || |||||||| |  |||||||||||||||||||||||||| |||||    
T  642341 ttgagaaaattgaagatgcactcccaacattcatcaggtaaataaaactcagc 642393  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 1537297 - 1537245
Alignment:
Q  123 ttgttgaggaatttgaagatactttcccaacattcatcaggtaaataaaaatc 175  Q
    |||||||||||| |||| | || ||||||||| |||||||||||||| |||||    
T  1537297 ttgttgaggaatctgaatacacattcccaacactcatcaggtaaatataaatc 1537245  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 45244570 - 45244521
Alignment:
Q  125 gttgaggaatttgaagatactttcccaacattcatcaggtaaataaaaat 174  Q
    |||||||||||| |||| || ||||||||| |||||||||||||| ||||    
T  45244570 gttgaggaatttcaagacacattcccaacactcatcaggtaaatagaaat 45244521  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 41886336 - 41886296
Alignment:
Q  129 aggaatttgaagatactttcccaacattcatcaggtaaata 169  Q
    ||||||||||||| || ||||||||| ||||||||||||||    
T  41886336 aggaatttgaagacacattcccaacactcatcaggtaaata 41886296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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