View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1251_low_11 (Length: 359)
Name: NF1251_low_11
Description: NF1251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1251_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 97 - 220
Target Start/End: Complemental strand, 44091729 - 44091606
Alignment:
| Q |
97 |
atcatccacattagtatttgctcaaaatatacacgacaagtaattagtgaggtacaacctagcagattgatgtaaaccctagaaagataaaattgaaaca |
196 |
Q |
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| T |
44091729 |
atcatccacattagtatttgctcaaaatatacacgacaagtaattagtgaggtacaacctagcagattgatgtaacccctagaaagataaaattgaaaca |
44091630 |
T |
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| Q |
197 |
agccatctttaattttcccagtat |
220 |
Q |
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| T |
44091629 |
agccatctttaattttcccagtat |
44091606 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 38822596 - 38822633
Alignment:
| Q |
220 |
tattattctgctaagtggtaattattttcatagatttt |
257 |
Q |
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| T |
38822596 |
tattattctgctaattggtaattgttttcatagatttt |
38822633 |
T |
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