View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1251_low_13 (Length: 347)

Name: NF1251_low_13
Description: NF1251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1251_low_13
NF1251_low_13
[»] chr5 (31 HSPs)
chr5 (12-319)||(43148354-43148661)
chr5 (12-68)||(27267009-27267065)
chr5 (14-69)||(10649327-10649382)
chr5 (12-69)||(7241656-7241713)
chr5 (12-69)||(7246832-7246889)
chr5 (14-69)||(30371598-30371653)
chr5 (14-68)||(781264-781318)
chr5 (12-69)||(18677615-18677672)
chr5 (14-67)||(21060432-21060485)
chr5 (16-69)||(28235459-28235512)
chr5 (18-69)||(27751788-27751840)
chr5 (14-69)||(36344640-36344695)
chr5 (27-69)||(4953956-4953998)
chr5 (17-67)||(33029726-33029776)
chr5 (19-69)||(34881584-34881634)
chr5 (12-65)||(7150484-7150537)
chr5 (12-69)||(7887086-7887143)
chr5 (12-69)||(16981164-16981221)
chr5 (12-69)||(19281093-19281150)
chr5 (14-65)||(26578127-26578178)
chr5 (18-69)||(42579751-42579802)
chr5 (31-69)||(19259978-19260016)
chr5 (19-68)||(3271563-3271612)
chr5 (12-69)||(6445810-6445867)
chr5 (14-61)||(15570791-15570838)
chr5 (15-65)||(41418694-41418745)
chr5 (12-67)||(43261966-43262021)
chr5 (14-52)||(2057989-2058027)
chr5 (19-69)||(28097027-28097077)
chr5 (12-69)||(11192241-11192298)
chr5 (21-69)||(35475494-35475542)
[»] chr8 (26 HSPs)
chr8 (12-69)||(9072595-9072652)
chr8 (14-69)||(9619509-9619564)
chr8 (12-69)||(42448177-42448234)
chr8 (14-69)||(11725560-11725615)
chr8 (18-69)||(4808842-4808893)
chr8 (14-69)||(11196770-11196825)
chr8 (14-69)||(44100083-44100138)
chr8 (12-66)||(29777110-29777164)
chr8 (14-67)||(2655749-2655802)
chr8 (12-69)||(28239711-28239768)
chr8 (12-69)||(33895959-33896016)
chr8 (12-69)||(44577914-44577971)
chr8 (12-68)||(17949126-17949182)
chr8 (18-69)||(9498757-9498807)
chr8 (14-69)||(43890276-43890331)
chr8 (15-69)||(19876090-19876144)
chr8 (24-69)||(11464050-11464095)
chr8 (16-69)||(15597320-15597373)
chr8 (12-69)||(33342315-33342372)
chr8 (16-69)||(34611682-34611735)
chr8 (14-62)||(14907075-14907123)
chr8 (13-69)||(27747262-27747318)
chr8 (12-68)||(35580337-35580393)
chr8 (12-55)||(16794185-16794228)
chr8 (18-68)||(12173381-12173431)
chr8 (18-68)||(12417809-12417859)
[»] chr6 (19 HSPs)
chr6 (12-69)||(12652811-12652868)
chr6 (14-69)||(17237435-17237490)
chr6 (12-69)||(10228550-10228607)
chr6 (14-69)||(8496836-8496891)
chr6 (14-69)||(25064106-25064161)
chr6 (12-69)||(23947466-23947523)
chr6 (12-69)||(33740727-33740784)
chr6 (12-69)||(34489119-34489176)
chr6 (18-69)||(4088330-4088381)
chr6 (14-69)||(7881254-7881309)
chr6 (12-71)||(16419027-16419086)
chr6 (12-62)||(4468437-4468487)
chr6 (19-69)||(4984733-4984783)
chr6 (14-69)||(7876196-7876251)
chr6 (11-67)||(8028266-8028322)
chr6 (12-68)||(8196556-8196612)
chr6 (18-62)||(12165719-12165763)
chr6 (14-68)||(33109706-33109760)
chr6 (16-68)||(17334647-17334699)
[»] chr7 (25 HSPs)
chr7 (14-69)||(23425522-23425577)
chr7 (14-69)||(46821885-46821940)
chr7 (12-69)||(22928019-22928076)
chr7 (12-69)||(26492236-26492293)
chr7 (14-68)||(2843378-2843432)
chr7 (12-69)||(26583585-26583642)
chr7 (12-69)||(42311151-42311208)
chr7 (12-71)||(433841-433900)
chr7 (14-69)||(21266263-21266318)
chr7 (16-69)||(23085391-23085445)
chr7 (12-69)||(1485405-1485462)
chr7 (12-69)||(35496324-35496381)
chr7 (12-69)||(35667380-35667437)
chr7 (15-68)||(48207775-48207827)
chr7 (14-69)||(46338924-46338979)
chr7 (12-62)||(31235941-31235991)
chr7 (16-69)||(17611002-17611055)
chr7 (16-69)||(20116454-20116507)
chr7 (12-69)||(32684556-32684613)
chr7 (21-68)||(42067218-42067265)
chr7 (14-69)||(45199182-45199237)
chr7 (15-69)||(6001892-6001946)
chr7 (12-69)||(1448978-1449035)
chr7 (14-65)||(42408237-42408288)
chr7 (33-69)||(12539125-12539161)
[»] chr3 (25 HSPs)
chr3 (14-69)||(44907550-44907605)
chr3 (12-69)||(3850604-3850661)
chr3 (14-68)||(14464377-14464431)
chr3 (12-69)||(4178433-4178490)
chr3 (12-69)||(25162305-25162362)
chr3 (12-68)||(49552372-49552428)
chr3 (14-65)||(36905994-36906045)
chr3 (12-69)||(22802890-22802947)
chr3 (12-69)||(46934511-46934568)
chr3 (12-69)||(51202398-51202455)
chr3 (14-69)||(29503331-29503386)
chr3 (14-69)||(32607337-32607391)
chr3 (12-67)||(38440726-38440781)
chr3 (12-67)||(46178447-46178502)
chr3 (14-65)||(50611568-50611619)
chr3 (19-65)||(6823553-6823599)
chr3 (12-66)||(39917545-39917599)
chr3 (12-69)||(4172435-4172492)
chr3 (12-69)||(25631676-25631733)
chr3 (12-69)||(38855186-38855242)
chr3 (14-69)||(12115962-12116017)
chr3 (12-69)||(2342361-2342417)
chr3 (16-69)||(25849689-25849742)
chr3 (14-69)||(35499352-35499408)
chr3 (12-69)||(37169099-37169156)
[»] chr2 (29 HSPs)
chr2 (14-68)||(45128080-45128134)
chr2 (12-69)||(2808619-2808676)
chr2 (12-69)||(8971777-8971834)
chr2 (14-67)||(21570559-21570612)
chr2 (14-69)||(36233880-36233935)
chr2 (14-68)||(27249302-27249356)
chr2 (12-69)||(459423-459480)
chr2 (12-69)||(6173507-6173564)
chr2 (17-69)||(25086909-25086961)
chr2 (14-65)||(27477034-27477085)
chr2 (14-69)||(30420552-30420607)
chr2 (12-69)||(40626176-40626233)
chr2 (14-65)||(7015861-7015912)
chr2 (14-69)||(32913117-32913172)
chr2 (14-68)||(40660080-40660134)
chr2 (16-69)||(3270381-3270434)
chr2 (12-69)||(3725056-3725113)
chr2 (12-69)||(32680731-32680788)
chr2 (12-69)||(41712914-41712971)
chr2 (14-66)||(4192717-4192769)
chr2 (25-69)||(9986509-9986553)
chr2 (18-53)||(42949605-42949640)
chr2 (12-69)||(20047231-20047287)
chr2 (12-68)||(33229137-33229193)
chr2 (18-65)||(4228011-4228058)
chr2 (12-69)||(34598862-34598920)
chr2 (249-319)||(44664735-44664805)
chr2 (16-65)||(9374702-9374751)
chr2 (14-42)||(41430930-41430958)
[»] scaffold0495 (1 HSPs)
scaffold0495 (12-69)||(5269-5326)
[»] chr4 (31 HSPs)
chr4 (12-69)||(34024585-34024642)
chr4 (19-67)||(43154176-43154224)
chr4 (14-69)||(9529029-9529084)
chr4 (14-69)||(47416767-47416822)
chr4 (12-69)||(868040-868097)
chr4 (12-69)||(10389902-10389959)
chr4 (12-68)||(31381820-31381876)
chr4 (12-71)||(5333680-5333738)
chr4 (12-67)||(56194484-56194539)
chr4 (14-68)||(20569136-20569190)
chr4 (12-69)||(9645698-9645755)
chr4 (12-69)||(10359695-10359752)
chr4 (12-69)||(35965124-35965181)
chr4 (12-69)||(38706859-38706916)
chr4 (14-67)||(50766660-50766713)
chr4 (21-69)||(25273758-25273806)
chr4 (18-69)||(6972692-6972743)
chr4 (14-69)||(9283794-9283849)
chr4 (19-69)||(1531789-1531839)
chr4 (14-66)||(37188743-37188795)
chr4 (14-69)||(2115739-2115794)
chr4 (18-69)||(12265338-12265389)
chr4 (14-69)||(43444276-43444331)
chr4 (14-61)||(53616802-53616849)
chr4 (12-62)||(5333608-5333658)
chr4 (12-69)||(51317868-51317926)
chr4 (12-69)||(21090036-21090093)
chr4 (28-69)||(44947286-44947327)
chr4 (12-69)||(4643739-4643798)
chr4 (14-68)||(27593989-27594042)
chr4 (25-69)||(50179654-50179698)
[»] chr1 (34 HSPs)
chr1 (12-69)||(51868794-51868851)
chr1 (12-69)||(51871739-51871796)
chr1 (14-68)||(25728110-25728164)
chr1 (14-68)||(50272291-50272345)
chr1 (12-69)||(9172363-9172420)
chr1 (12-69)||(9180345-9180402)
chr1 (12-69)||(25406433-25406490)
chr1 (18-69)||(33291574-33291625)
chr1 (12-73)||(27872610-27872671)
chr1 (12-69)||(30818494-30818551)
chr1 (12-69)||(45426211-45426268)
chr1 (14-61)||(5701140-5701187)
chr1 (18-69)||(7342597-7342648)
chr1 (14-69)||(20266177-20266232)
chr1 (12-67)||(28035016-28035071)
chr1 (12-62)||(5324706-5324756)
chr1 (18-68)||(19723209-19723259)
chr1 (14-67)||(14545397-14545450)
chr1 (12-69)||(18569459-18569516)
chr1 (14-67)||(19716048-19716100)
chr1 (16-69)||(40646563-40646616)
chr1 (12-65)||(40881162-40881215)
chr1 (11-68)||(48365899-48365956)
chr1 (14-69)||(7997662-7997717)
chr1 (14-69)||(30878950-30879005)
chr1 (14-69)||(35584772-35584827)
chr1 (12-69)||(38520682-38520739)
chr1 (12-69)||(45805958-45806015)
chr1 (16-69)||(50166252-50166305)
chr1 (16-70)||(41081857-41081912)
chr1 (18-69)||(44637297-44637347)
chr1 (14-69)||(50148247-50148302)
chr1 (12-69)||(7312247-7312304)
chr1 (12-57)||(11453822-11453866)
[»] scaffold0003 (1 HSPs)
scaffold0003 (14-69)||(361945-362000)
[»] scaffold0311 (1 HSPs)
scaffold0311 (12-69)||(8591-8648)
[»] scaffold0426 (1 HSPs)
scaffold0426 (12-68)||(6210-6266)
[»] scaffold0608 (1 HSPs)
scaffold0608 (25-69)||(113-157)
[»] scaffold0011 (1 HSPs)
scaffold0011 (28-68)||(11011-11051)


Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 12 - 319
Target Start/End: Complemental strand, 43148661 - 43148354
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccccaagagtaaattaattttgacacatatataagaacctaaccgg 111  Q
    |||||||||| |||||| | |  | |||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  43148661 agagagaaaaggatgaaaatgaataattttaagtcaagaattgacccaaaaccacactaagagtaaattaattttgacacatatataagaacctaaccgg 43148562  T
Q  112 ctaaaggctaatccacagcaactataattataaactttaaaaagataacatttacaatacaatatgaaactccaannnnnnnnnnnnnnnnnnnnnnnna 211  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                        |    
T  43148561 ctaaaggctaatccacaacaactataattataaactttaaaaagataacatttacaatacaatatgaaactccaattgtttgttctttttgttgttttga 43148462  T
Q  212 tgtcttatgcagatgcaaggaagcaacctttgtcggatggttggagtcgaatcaaagatatcaacaacccacatgtgattgatatcgctaattttgctgt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43148461 tgtcttatgcagatgcaaggaagcaacctttgtcggatggttggagtcgaatcaaagatatcaacaacccacatgtgattgatatcgctaattttgctgt 43148362  T
Q  312 tatcgagt 319  Q
    ||||||||    
T  43148361 tatcgagt 43148354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 27267009 - 27267065
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  27267009 agagagaaaaatatgaagaggggtgatttcaggtcaagaattgacccaaaaccaccc 27267065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 10649382 - 10649327
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  10649382 agagaaaaagatgaagaggggtgatttcaggtcaagaattgacccaaaatcacccc 10649327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 7241713 - 7241656
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||    
T  7241713 agagagaaaaagatgaagaggggtggtttcaggttaagaattgacccaaaaccacccc 7241656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 7246889 - 7246832
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||    
T  7246889 agagagaaaaagatgaagaggggtggtttcaggttaagaattgacccaaaaccacccc 7246832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 30371653 - 30371598
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||||| |||||  |||||||||||||||||||    
T  30371653 agagaaaaagatgaagaggggtgatttcaggtcaaatattgacccaaaaccacccc 30371598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 781318 - 781264
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    ||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||    
T  781318 agagaaaaagatgaagatgggtgatttcaggtcaagaattgaaccaaaaccaccc 781264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 18677615 - 18677672
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||||||||||||| ||||||||  |||| ||||||||||||||||||||    
T  18677615 agagagaaaaagatgaagagggatgatttcagatcaataattgacccaaaaccacccc 18677672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 21060432 - 21060485
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacc 67  Q
    |||||||||||||||||| ||||||||||  |||||||||||||||||||||||    
T  21060432 agagaaaaagatgaagagtggtgatttcagatcaagaattgacccaaaaccacc 21060485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 28235512 - 28235459
Alignment:
Q  16 agaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||| |||||  |||||||||||||||||||    
T  28235512 agaaaaagatgaagaggggtgatttcaggtcaatgattgacccaaaaccacccc 28235459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 27751840 - 27751788
Alignment:
Q  18 aaaaagatgaagagg-ggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  27751840 aaaaagatgaagaggaggtgatttcaggtcaagaattgacccaaaaccacccc 27751788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 36344640 - 36344695
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||| | ||||||||| ||| ||||||||||||    
T  36344640 agagaaaaagatgaagaggggtgattttaggtcaagaatcgactcaaaaccacccc 36344695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 4953998 - 4953956
Alignment:
Q  27 aagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  4953998 aagaggggtgattccaagtcaagaattgacccaaaaccacccc 4953956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 33029776 - 33029726
Alignment:
Q  17 gaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacc 67  Q
    |||||||||||||| |||||||||| |||||| ||||||||||||||||||    
T  33029776 gaaaaagatgaagacgggtgatttcgagtcaaaaattgacccaaaaccacc 33029726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 34881634 - 34881584
Alignment:
Q  19 aaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||| |||||||||| |||||||||||||||| |||||||||    
T  34881634 aaaagatgaagagaggtgatttcaggtcaagaattgacccagaaccacccc 34881584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 7150484 - 7150537
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaacca 65  Q
    ||||||||||||||||||||||||||||||| ||||| |||| | |||||||||    
T  7150484 agagagaaaaagatgaagaggggtgatttcaggtcaaaaattaatccaaaacca 7150537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 7887086 - 7887143
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||| |||||| |||||||| |||||||| ||||||||| ||||||||||||||||    
T  7887086 agagaggaaaagacgaagagggatgatttcaggtcaagaatggacccaaaaccacccc 7887143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 16981221 - 16981164
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||| ||||||||| ||||||||| |||||||||||| |||| ||||||||    
T  16981221 agagagaaaaatatgaagaggagtgatttcaggtcaagaattgatccaataccacccc 16981164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 19281093 - 19281150
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||| ||||||||||  ||||| |||| |||||||||||||||    
T  19281093 agagagaaaaagatgaagatgggtgatttccggtcaaaaatttacccaaaaccacccc 19281150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 26578178 - 26578127
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaacca 65  Q
    ||||||||||||||||| | ||||||||| |||||||||||||| |||||||    
T  26578178 agagaaaaagatgaagatgagtgatttcaggtcaagaattgaccaaaaacca 26578127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 42579802 - 42579751
Alignment:
Q  18 aaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||| ||||| ||||||||||||| ||||| ||||||||||||||||||||    
T  42579802 aaaaaaatgaaaaggggtgatttcatgtcaataattgacccaaaaccacccc 42579751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 19259978 - 19260016
Alignment:
Q  31 ggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  19259978 ggggtgatttcaggtcaagaattgacccaaaaccacccc 19260016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 3271563 - 3271612
Alignment:
Q  19 aaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    |||||||||||||| ||||||||| |||||||||||||| |||| |||||    
T  3271563 aaaagatgaagaggagtgatttcatgtcaagaattgacctaaaatcaccc 3271612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 6445867 - 6445810
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||| |||||||| ||||||||| |||| || ||||||| ||||||||||||    
T  6445867 agagagaaaacgatgaagatgggtgattttaagttaaaaattgactcaaaaccacccc 6445810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 15570838 - 15570791
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaa 61  Q
    |||||||||||||||||||| |||||||||||||| || |||| ||||    
T  15570838 agagaaaaagatgaagagggatgatttcaagtcaaaaactgactcaaa 15570791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 41418694 - 41418745
Alignment:
Q  15 gagaaaaagatgaagagggg-tgatttcaagtcaagaattgacccaaaacca 65  Q
    |||||||||||||||||||| |||||||| ||||| ||||| ||||||||||    
T  41418694 gagaaaaagatgaagagggggtgatttcaggtcaaaaattgtcccaaaacca 41418745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 43261966 - 43262021
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacc 67  Q
    ||||| ||||||||||||| ||||||||||| || |||||||||| ||||| ||||    
T  43261966 agagataaaaagatgaagatgggtgatttcaggttaagaattgactcaaaatcacc 43262021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 2057989 - 2058027
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaat 52  Q
    ||||||||||||||||||||||||||| | |||||||||    
T  2057989 agagaaaaagatgaagaggggtgattttaggtcaagaat 2058027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 28097077 - 28097027
Alignment:
Q  19 aaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||| |||||| |||| ||||| ||||||| ||||||||||||    
T  28097077 aaaagatgaagatgggtgaattcaggtcaaaaattgacacaaaaccacccc 28097027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 11192298 - 11192241
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||| |||||||| || |  |||||||||| ||||| ||||||||||||||||||||    
T  11192298 agagacaaaaagattaatataggtgatttcaggtcaaaaattgacccaaaaccacccc 11192241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 35475494 - 35475542
Alignment:
Q  21 aagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||| ||||||||||  ||||||||| |||||||| ||||||    
T  35475494 aagatgaagagaggtgatttcagatcaagaattaacccaaaatcacccc 35475542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 9072652 - 9072595
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9072652 agagagaaaaagatgaagaggggtgatttcaagtcaaaaattgacccaaaaccacccc 9072595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 9619509 - 9619564
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9619509 agagaaaaagatgaagaggggtgatttcaggtcaagaattgacccaaaaccacccc 9619564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 42448177 - 42448234
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  42448177 agagagaaaaagatgaagaggggtgatttcaggtcaagaattaacccaaaaccacccc 42448234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 11725615 - 11725560
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  11725615 agagaaaaagacgaagaggggtgatttcaggtcaagaattgacccaaaaccacccc 11725560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 4808893 - 4808842
Alignment:
Q  18 aaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  4808893 aaaaagatgaagaggggtaatttcaggtcaagaattgacccaaaaccacccc 4808842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 11196825 - 11196770
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||| || |||||||| ||||||||||||||||||||||||||    
T  11196825 agagaaaaagatgaagatggatgatttcaggtcaagaattgacccaaaaccacccc 11196770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 44100083 - 44100138
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||    
T  44100083 agagaaaaagatgaagaggggtgattttaggtcaagaatcgacccaaaaccacccc 44100138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 29777164 - 29777110
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccac 66  Q
    ||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||    
T  29777164 agagagaaaaagatgaagaggagtgatttcatgtcaataattgacccaaaaccac 29777110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 2655802 - 2655749
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacc 67  Q
    ||||||||||||||||| |||||||| || ||||||||||||||||||||||||    
T  2655802 agagaaaaagatgaagatgggtgattgcaggtcaagaattgacccaaaaccacc 2655749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 28239768 - 28239711
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||||||||||| |||||||||| ||||| ||||||||||||| ||||||    
T  28239768 agagagaaaaagatgaagagaggtgatttcaggtcaaaaattgacccaaaatcacccc 28239711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 33896016 - 33895959
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||||||||||||||||| || |  |||||||||||||||||||||||||    
T  33896016 agagagaaaaagatgaagaggggtgactttagatcaagaattgacccaaaaccacccc 33895959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 44577971 - 44577914
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||| ||||||| | ||||| ||||||||||||||||||||    
T  44577971 agagagaaaaagatgaagaggagtgattttaggtcaaaaattgacccaaaaccacccc 44577914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 17949182 - 17949126
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    |||||||||||| |||||||||||||||||| ||||| ||||||||||||| |||||    
T  17949182 agagagaaaaaggtgaagaggggtgatttcaggtcaataattgacccaaaatcaccc 17949126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 9498757 - 9498807
Alignment:
Q  18 aaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  9498757 aaaaagatgaagaggggtgatttcaggt-aagaattgacccaaaaccacccc 9498807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 43890276 - 43890331
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||||| ||||| || ||| |||||||||||||    
T  43890276 agagaaaaagatgaagaggggtgatttcaggtcaaaaaatgatccaaaaccacccc 43890331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 19876144 - 19876090
Alignment:
Q  15 gagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||||||| | || |||||| ||||||||||||||||||||||||||    
T  19876144 gagaaaaagatgaagatgagtaatttcaggtcaagaattgacccaaaaccacccc 19876090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 11464095 - 11464050
Alignment:
Q  24 atgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||    
T  11464095 atgaagaggggtgatttcaggtcaagaattgacctaaaaccacccc 11464050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 15597320 - 15597373
Alignment:
Q  16 agaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||| ||||| |||||||  |||||||||||    
T  15597320 agaaaaagatgaagaggggtgatttcaggtcaaaaattgactgaaaaccacccc 15597373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 33342372 - 33342315
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||| |||| |||||||||||||||||||| || || ||||||||||||||||||||    
T  33342372 agagaaaaaaggatgaagaggggtgatttcaggttaaaaattgacccaaaaccacccc 33342315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 34611735 - 34611682
Alignment:
Q  16 agaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||| ||||||| | ||||||||| ||||||||||||||||||||||||||    
T  34611735 agaaaaatatgaagatgagtgatttcaggtcaagaattgacccaaaaccacccc 34611682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 14907075 - 14907123
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaa 62  Q
    ||||||||||||||||| ||||||||||| |||||||||||| ||||||    
T  14907075 agagaaaaagatgaagatgggtgatttcaggtcaagaattgatccaaaa 14907123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 27747262 - 27747318
Alignment:
Q  13 gagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||| |||||||||||||  |||||||||||||||| |||||||||||||| |||||    
T  27747262 gagataaaaagatgaagaatggtgatttcaagtcaaaaattgacccaaaactacccc 27747318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 35580393 - 35580337
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    ||||||||||||||||||| | ||||||| | ||||| |||||||||||||||||||    
T  35580393 agagagaaaaagatgaagatgagtgattttatgtcaaaaattgacccaaaaccaccc 35580337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 16794228 - 16794185
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattga 55  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||    
T  16794228 agagagaaaaagatgaagatgggtgatttcaagtcaaaaattga 16794185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 12173431 - 12173381
Alignment:
Q  18 aaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    |||||||| |||| ||||||||||| ||||| | |||||||||||||||||    
T  12173431 aaaaagataaagatgggtgatttcaggtcaaaagttgacccaaaaccaccc 12173381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 12417859 - 12417809
Alignment:
Q  18 aaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    |||||||| |||| ||||||||||| ||||| | |||||||||||||||||    
T  12417859 aaaaagataaagatgggtgatttcaggtcaaaagttgacccaaaaccaccc 12417809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 12652868 - 12652811
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12652868 agagagaaaaagatgaagaggggtgatttcaggtcaagaattgacccaaaaccacccc 12652811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 17237435 - 17237490
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17237435 agagaaaaagatgaagaggggtgatttcatgtcaagaattgacccaaaaccacccc 17237490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 10228607 - 10228550
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10228607 agagagagaaagatgaagaggggtgatttcaggtcaagaattgacccaaaaccacccc 10228550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 8496891 - 8496836
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  8496891 agagaaaaagatgaagaggggtgatttcaggtcaagaattgactcaaaaccacccc 8496836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 25064161 - 25064106
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  25064161 agagaaaaagatgaagagaggtgatttcaggtcaagaattgacccaaaaccacccc 25064106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 23947466 - 23947523
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||    
T  23947466 agagagaaaacgatgaagatgggtgatttcaggtcaagaattgacccaaaaccacccc 23947523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 33740727 - 33740784
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||    
T  33740727 agagagaaaaagatgaagaggggtgattttaggtcaagaattgaccaaaaaccacccc 33740784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 34489176 - 34489119
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||||| ||||||| |||||| | |||||||||||    
T  34489176 agagagaaaaagatgaagaggggtgattttaagtcaaaaattgatcaaaaaccacccc 34489119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 4088381 - 4088330
Alignment:
Q  18 aaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||| ||||||| ||||||||||| ||||||||||||||||||||||||||    
T  4088381 aaaaaaatgaagatgggtgatttcaggtcaagaattgacccaaaaccacccc 4088330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 7881254 - 7881309
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||||||||  |||||||||||||||| |||||| |||||||||||||    
T  7881254 agagaaaaagatgaagaaaggtgatttcaagtcaataattgatccaaaaccacccc 7881309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 16419086 - 16419027
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccccaa 71  Q
    ||||||||||||||||||| ||||||||| | || |||||||||| ||||||||||||||    
T  16419086 agagagaaaaagatgaagatgggtgattttaggttaagaattgactcaaaaccaccccaa 16419027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 4468487 - 4468437
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaa 62  Q
    |||||||| ||||||||||||||||| |||| |||||||||||||||||||    
T  4468487 agagagaacaagatgaagaggggtgacttcatgtcaagaattgacccaaaa 4468437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 4984733 - 4984783
Alignment:
Q  19 aaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||| | ||||||||| ||||||||||||||||||||||||||    
T  4984733 aaaagatgaagatgagtgatttcaggtcaagaattgacccaaaaccacccc 4984783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 7876196 - 7876251
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||| ||||||||| | ||||| |||||| |||||||||||||    
T  7876196 agagaaaaagatgaagatgggtgattttaggtcaataattgatccaaaaccacccc 7876251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 8028266 - 8028322
Alignment:
Q  11 cagagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacc 67  Q
    ||||||||||||||||||| ||||||||| ||  |||| ||||||||||||| ||||    
T  8028266 cagagagaaaaagatgaagtggggtgattccagatcaataattgacccaaaatcacc 8028322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 8196556 - 8196612
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    ||||||||||||||||| | ||||||||| | |||||||| ||| ||||||||||||    
T  8196556 agagagaaaaagatgaatacgggtgattttaggtcaagaactgatccaaaaccaccc 8196612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 12165763 - 12165719
Alignment:
Q  18 aaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaa 62  Q
    ||||||||||||||| ||||||||| ||||| |||||||||||||    
T  12165763 aaaaagatgaagaggagtgatttcaggtcaataattgacccaaaa 12165719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 33109760 - 33109706
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    ||||||||||||||||| ||  ||||| | ||||| |||||||||||||||||||    
T  33109760 agagaaaaagatgaagatggacgattttaggtcaaaaattgacccaaaaccaccc 33109706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 17334699 - 17334647
Alignment:
Q  16 agaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    |||||||||||||||  ||||||||||  |||||||| || ||||||||||||    
T  17334699 agaaaaagatgaagattggtgatttcagatcaagaatcgatccaaaaccaccc 17334647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 23425522 - 23425577
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23425522 agagaaaaagatgaagaggggtgatttcaggtcaagaattgacccaaaaccacccc 23425577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 46821940 - 46821885
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  46821940 agagaaaaagatgaagaggggtgatttcaggtcaagaattgacccaaaaccacccc 46821885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 22928019 - 22928076
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  22928019 agagagaaaaagatgaaaaggggtgatttcaggtcaagaattgacccaaaaccacccc 22928076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 26492293 - 26492236
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  26492293 agagagaaaaagatgaagaggggttatttcaggtcaagaattgacccaaaaccacccc 26492236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 2843378 - 2843432
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  2843378 agagaaaaagatgaagaggggtgttttcaggtcaagaattgacccaaaaccaccc 2843432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 26583642 - 26583585
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  26583642 agagataaaaagatgaagaggggtgatttcaggtcaagaattgaccaaaaaccacccc 26583585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 42311208 - 42311151
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||    
T  42311208 agagagaaaatgatgaagagggatgatttcaggtcaagaattgacccaaaaccacccc 42311151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 433841 - 433900
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccccaa 71  Q
    ||||||||||||||||| |||| |||||||| ||||| ||||||||||||||||||||||    
T  433841 agagagaaaaagatgaaaagggatgatttcaggtcaaaaattgacccaaaaccaccccaa 433900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 21266318 - 21266263
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||    
T  21266318 agagaaaaagatgaagagaggtgatttcatgtcaataattgacccaaaaccacccc 21266263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 23085445 - 23085391
Alignment:
Q  16 agaaaaagatgaagagggg-tgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  23085445 agaaaaagatgaagagggggtgatttcaagtcaataattgacccaaaaccacccc 23085391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 1485405 - 1485462
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||| ||||||||| | |||||||||| |||||||||||||||    
T  1485405 agagagaaaaagatgaagacgggtgattttaggtcaagaattaacccaaaaccacccc 1485462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 35496324 - 35496381
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||||||||||  |||||||| | ||||||||||||||||||||||||||    
T  35496324 agagagaaaaagatgaagattggtgattttaggtcaagaattgacccaaaaccacccc 35496381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 35667380 - 35667437
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||| ||||||| ||||||||| |||||||||||||| |||||||||||||    
T  35667380 agagagaaaaatatgaagaagggtgattttaagtcaagaattgatccaaaaccacccc 35667437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 48207827 - 48207775
Alignment:
Q  15 gagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  48207827 gagaaaaagatgaagaggggtgatttcaggtcaagaa-tgacccaaaaccaccc 48207775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 46338979 - 46338924
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||||||||||| | |||||| |||||||||||||||||||| |||||    
T  46338979 agagaaaaagatgaagagggataatttcaggtcaagaattgacccaaaactacccc 46338924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 31235941 - 31235991
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaa 62  Q
    ||||||||||||||||||||||| ||||||| ||||| |||||||||||||    
T  31235941 agagagaaaaagatgaagaggggagatttcatgtcaaaaattgacccaaaa 31235991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 17611055 - 17611002
Alignment:
Q  16 agaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||| ||||  |||||||| |||||||||||    
T  17611055 agaaaaagatgaagaggggtgatttcaggtcataaattgacctaaaaccacccc 17611002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 20116507 - 20116454
Alignment:
Q  16 agaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||||||| |||||    
T  20116507 agaaaaagatgaagaagggtgatttcaggtcaaaaattgacccaaaactacccc 20116454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 32684613 - 32684556
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||| ||||||||   ||||||||| ||||||||||||||||||||||||||    
T  32684613 agagagaaaacgatgaagacatgtgatttcaggtcaagaattgacccaaaaccacccc 32684556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 42067218 - 42067265
Alignment:
Q  21 aagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    ||||||||||| |||||||||| ||||||||||||||||||| |||||    
T  42067218 aagatgaagagaggtgatttcaggtcaagaattgacccaaaatcaccc 42067265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 45199182 - 45199237
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||| ||||||||||| ||||| | |||| |||||||||||||    
T  45199182 agagaaaaagatgaagatgggtgatttcaggtcaatagttgatccaaaaccacccc 45199237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 6001946 - 6001892
Alignment:
Q  15 gagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||||||| ||||||||||| ||||| |||||| |||||| ||||||    
T  6001946 gagaaaaagatgaagatgggtgatttcaggtcaaaaattgatccaaaatcacccc 6001892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 1448978 - 1449035
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||| ||||||||   ||| |||||| ||||||||||||||||||||||||||    
T  1448978 agagagaaagagatgaagtttggttatttcaggtcaagaattgacccaaaaccacccc 1449035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 42408288 - 42408237
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaacca 65  Q
    ||||||||||||||||| || |||||||| |||||||| ||||| |||||||    
T  42408288 agagaaaaagatgaagatggatgatttcaggtcaagaactgaccaaaaacca 42408237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 12539125 - 12539161
Alignment:
Q  33 ggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||| |||||||||||||| |||||||||||    
T  12539125 ggtgatttcaggtcaagaattgaccaaaaaccacccc 12539161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 44907550 - 44907605
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44907550 agagaaaaagatgaagaggggtgatttcaggtcaagaattgacccaaaaccacccc 44907605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 3850604 - 3850661
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  3850604 agagagaaaaagatgaagaggggtgatttcaggtcaagaattgatccaaaaccacccc 3850661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 14464431 - 14464377
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  14464431 agagaaaaagatgaataggggtgatttcaggtcaagaattgacccaaaaccaccc 14464377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 4178490 - 4178433
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||    
T  4178490 agagagaaaaagatgaagatgggtgattttaggtcaagaattgacccaaaaccacccc 4178433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 25162362 - 25162305
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||    
T  25162362 agagagaaaaagatgaagatgggtgatttcaaatcaagaattgacacaaaaccacccc 25162305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 49552372 - 49552428
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    ||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  49552372 agagaaaaaatgatgaagaggggtgatttcaggtcaagaattgacccaaaaccaccc 49552428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 36906045 - 36905994
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaacca 65  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  36906045 agagaaaaagatgaagaagggtgatttcaggtcaagaattgacccaaaacca 36905994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 22802947 - 22802890
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||| ||||||||| ||||| ||||||||||||| ||||||    
T  22802947 agagagaaaaagatgaagaggagtgatttcatgtcaaaaattgacccaaaatcacccc 22802890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 46934568 - 46934511
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||    
T  46934568 agagagagaaagatgaagaggggtgatttcaggtcaaaaattgaccaaaaaccacccc 46934511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 51202398 - 51202455
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||| ||||||| ||||||||||| ||||||||||||||||||| ||||||    
T  51202398 agagagaaaaatatgaagatgggtgatttcaggtcaagaattgacccaaaatcacccc 51202455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 29503386 - 29503331
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||| ||||||| ||||||||||| ||||||||||||||||||| ||||||    
T  29503386 agagaaaaatatgaagatgggtgatttcaggtcaagaattgacccaaaatcacccc 29503331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 32607391 - 32607337
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||    
T  32607391 agagaaaatgatgaagaggggt-atttcaggtcaagaattgacccaaaaccacccc 32607337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 38440726 - 38440781
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacc 67  Q
    |||||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||    
T  38440726 agagagaaaaagataaagaggagtgatttcaggtcaagaattgactcaaaaccacc 38440781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 46178502 - 46178447
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacc 67  Q
    |||||||||||||||||||||| |||||||| ||||  ||||||||||||||||||    
T  46178502 agagagaaaaagatgaagagggatgatttcaggtcataaattgacccaaaaccacc 46178447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 50611568 - 50611619
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaacca 65  Q
    ||||||||||||||||||||||||||| | ||||| ||||||||||||||||    
T  50611568 agagaaaaagatgaagaggggtgattttaggtcaataattgacccaaaacca 50611619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 6823553 - 6823599
Alignment:
Q  19 aaaagatgaagaggggtgatttcaagtcaagaattgacccaaaacca 65  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||    
T  6823553 aaaagatgaagaggggtgatttcagatcaagaattgacccaaaacca 6823599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 39917545 - 39917599
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccac 66  Q
    ||||||||||| ||||||| || |||||||| |||||||||||||||||||||||    
T  39917545 agagagaaaaatatgaagatggatgatttcaggtcaagaattgacccaaaaccac 39917599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 4172492 - 4172435
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||| || |||||| | || |||||||||||||||||||||||    
T  4172492 agagagaaaaagatgaagatggatgattttatgttaagaattgacccaaaaccacccc 4172435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 25631676 - 25631733
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||| |||||| |||||| | ||||| ||||||||||||||||||||    
T  25631676 agagagaaaaagatggagagggatgattttaggtcaaaaattgacccaaaaccacccc 25631733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 38855186 - 38855242
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||||||||||||||||||||   |||||||| |||||||||||||||||    
T  38855186 agagagaaaaagatgaagaggggtgattttcggtcaagaa-tgacccaaaaccacccc 38855242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 12116017 - 12115962
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||| ||||||||||||| | |||||||| ||||||||||||| ||||||||||||    
T  12116017 agaggaaaagatgaagagagatgatttcaggtcaagaattgactcaaaaccacccc 12115962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 2342417 - 2342361
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||||||||||||| ||| |||| ||  ||||||||||||||||||||||    
T  2342417 agagagaaaaagatgaagagggttga-ttcaggtttagaattgacccaaaaccacccc 2342361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 25849742 - 25849689
Alignment:
Q  16 agaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||| ||| | ||||||||||||||||| ||||||| ||||||||||||    
T  25849742 agaaaaagacgaataagggtgatttcaagtcaaaaattgactcaaaaccacccc 25849689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 35499352 - 35499408
Alignment:
Q  14 agagaaaaagatgaagagggg-tgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||| |||||||| || || |||||||| |||||||||||    
T  35499352 agagaaaaagatgaagagggggtgatttcaggtaaaaaattgaccaaaaaccacccc 35499408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 37169156 - 37169099
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||| ||||||| |||||||||| || || |||||| |||||| ||||||    
T  37169156 agagagaaaaaggtgaagagaggtgatttcaggtaaaaaattgatccaaaatcacccc 37169099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 45128134 - 45128080
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  45128134 agagaaaaagatgaagaggggtgatttcaggtcaagaattgacccaaaaccaccc 45128080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 2808619 - 2808676
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2808619 agagagaaatagatgaagaggggtgatttcaggtcaagaattgacccaaaaccacccc 2808676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 8971777 - 8971834
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  8971777 agagagaaaaagatgaagagggatgatttcaggtcaagaattgacccaaaaccacccc 8971834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 21570559 - 21570612
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacc 67  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21570559 agagaaaaagatgaagaggggtgatttcaggtcaagaattgacccaaaaccacc 21570612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 36233935 - 36233880
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  36233935 agagaaaaagatgaagaggggtgatttcaggtcatgaattgacccaaaaccacccc 36233880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 27249302 - 27249356
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  27249302 agagaaaaagatgaagaggggtgatttcaggtcaagtattgacccaaaaccaccc 27249356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 459423 - 459480
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||    
T  459423 agagagaaaaggatgaagaggggtgatttcaggtcaaaaattgacccaaaaccacccc 459480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 6173564 - 6173507
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||    
T  6173564 agagagaaaaagatgaagaggggtgatttcaggtcaagaatagaccgaaaaccacccc 6173507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 25086961 - 25086909
Alignment:
Q  17 gaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  25086961 gaaaaagatgaagaggggtgatttcaggtcaataattgacccaaaaccacccc 25086909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 27477085 - 27477034
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaacca 65  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  27477085 agagaaaaagatgaagaggggtgatttcatgtcaataattgacccaaaacca 27477034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 30420607 - 30420552
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||    
T  30420607 agagaaaaagatgaagaggggtgatttcaggtcaaaaattgatccaaaaccacccc 30420552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 40626176 - 40626233
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||| ||||||||||||||||| ||||||||| ||||||||| ||||||    
T  40626176 agagagaaaaagacgaagaggggtgatttcaggtcaagaatagacccaaaatcacccc 40626233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 7015861 - 7015912
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaacca 65  Q
    |||||||||||| | |||||||||||||| ||||||||||||||||||||||    
T  7015861 agagaaaaagattaggaggggtgatttcaggtcaagaattgacccaaaacca 7015912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 32913172 - 32913117
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||| ||| |||||||||||||||| |||||||||||| |||||||||||||    
T  32913172 agagaaaaggatcaagaggggtgatttcaggtcaagaattgatccaaaaccacccc 32913117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 40660080 - 40660134
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    ||||||||||||||||| | ||||||||| ||||||||||||| |||||||||||    
T  40660080 agagaaaaagatgaagatgtgtgatttcaggtcaagaattgactcaaaaccaccc 40660134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 3270381 - 3270434
Alignment:
Q  16 agaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||| | | ||||||||| ||||||||||||||||||||||||||    
T  3270381 agaaaaagatgaaaatgagtgatttcaggtcaagaattgacccaaaaccacccc 3270434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 3725113 - 3725056
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||||||||||||  |||||| | ||||| ||||||||||||||||||||    
T  3725113 agagagaaaaagatgaagaggaatgattttaggtcaaaaattgacccaaaaccacccc 3725056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 32680731 - 32680788
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||| | ||||||||| ||||||||| |||| |||||||||||    
T  32680731 agagagaaaaagatgaagatgagtgatttcaggtcaagaatcgaccgaaaaccacccc 32680788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 41712914 - 41712971
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||| |||||| | ||||||||||| |||||||||| |||||||||||||||    
T  41712914 agagagaaaatgatgaaaatgggtgatttcacgtcaagaattaacccaaaaccacccc 41712971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 4192769 - 4192717
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccac 66  Q
    ||||||||||||||||||||||||| ||| ||||| |||||| ||||||||||    
T  4192769 agagaaaaagatgaagaggggtgatctcaggtcaaaaattgatccaaaaccac 4192717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 9986509 - 9986553
Alignment:
Q  25 tgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||    
T  9986509 tgaagagggatgatttcaggtcaagaattgacccaaaaccacccc 9986553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 42949640 - 42949605
Alignment:
Q  18 aaaaagatgaagaggggtgatttcaagtcaagaatt 53  Q
    ||||||||||||||||||||||||||||||||||||    
T  42949640 aaaaagatgaagaggggtgatttcaagtcaagaatt 42949605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 20047231 - 20047287
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||| |||| |||||||| |||||||||||| ||||||| |||||    
T  20047231 agagagaaaaagatgaataggg-tgatttcaggtcaagaattgatccaaaactacccc 20047287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 33229137 - 33229193
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    ||||| |||||||||||||| |||||||| |  |||| |||||||||||||||||||    
T  33229137 agagaaaaaaagatgaagagaggtgattttagctcaataattgacccaaaaccaccc 33229193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 4228058 - 4228011
Alignment:
Q  18 aaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaacca 65  Q
    ||||| ||||||| | ||||||||| ||||||||||||||||||||||    
T  4228058 aaaaatatgaagatgtgtgatttcaggtcaagaattgacccaaaacca 4228011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 34598920 - 34598862
Alignment:
Q  12 agagagaaaaagatgaagaggggt-gatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||| | || ||||| | |||||||||||| |||||||||||||    
T  34598920 agagagaaaaagatgaagatgagttgatttgaggtcaagaattgatccaaaaccacccc 34598862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 319
Target Start/End: Complemental strand, 44664805 - 44664735
Alignment:
Q  249 tggttggagtcgaatcaaagatatcaacaacccacatgtgattgatatcgctaattttgctgttatcgagt 319  Q
    ||||||||| | |||||| || |||||| | ||||| ||||||| |||||| ||||||||||||| |||||    
T  44664805 tggttggagcccaatcaaggacatcaacgatccacacgtgattgttatcgccaattttgctgttaccgagt 44664735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 9374702 - 9374751
Alignment:
Q  16 agaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaacca 65  Q
    |||||||||||||||  | |||||||| ||||| ||||||||||||||||    
T  9374702 agaaaaagatgaagaatgttgatttcatgtcaaaaattgacccaaaacca 9374751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 42
Target Start/End: Complemental strand, 41430958 - 41430930
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttca 42  Q
    |||||||||||||||||||||||||||||    
T  41430958 agagaaaaagatgaagaggggtgatttca 41430930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 5326 - 5269
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5326 agagagagaaagatgaagaggggtgatttcaggtcaagaattgacccaaaaccacccc 5269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 34024585 - 34024642
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  34024585 agagagaaaaagatgaagaggggtgatttcaggtcaagaattgatccaaaaccacccc 34024642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 43154176 - 43154224
Alignment:
Q  19 aaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacc 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43154176 aaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacc 43154224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 9529029 - 9529084
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  9529029 agagaaaaagataaagaggggtgatttcaggtcaagaattgacccaaaaccacccc 9529084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 47416822 - 47416767
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  47416822 agagaaaaagatgaagaggggtgatttcaagtcaataattgacccaaaatcacccc 47416767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 868097 - 868040
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||    
T  868097 agagagaaaaagatgaagaggggtgatttcatgtcaagaatcgacctaaaaccacccc 868040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 10389902 - 10389959
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||    
T  10389902 agagagaaaaagatgaagatgagtgatttcaggtcaagaattgacccaaaaccacccc 10389959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 31381820 - 31381876
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    ||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||    
T  31381820 agagagaaaaagatgagaaggggtgatttcaggtcaagaattgacccaaaaccaccc 31381876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 5333680 - 5333738
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccccaa 71  Q
    |||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||    
T  5333680 agagagaaaaagatgaagaggg-tgatttcatgtcaaaaattgacccaaaaccaccccaa 5333738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 56194539 - 56194484
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacc 67  Q
    |||||||||||||||||||||  |||||||| ||||||||||||||||||||||||    
T  56194539 agagagaaaaagatgaagaggtttgatttcaggtcaagaattgacccaaaaccacc 56194484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 20569190 - 20569136
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    ||||||||| ||||||||||||||||||| || ||||||||||||||||||||||    
T  20569190 agagaaaaaaatgaagaggggtgatttcaggttaagaattgacccaaaaccaccc 20569136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 9645698 - 9645755
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||||||||||| |||||    
T  9645698 agagacaaaaagatgaagaggggtgatatcaggtcaagaattgacccaaaacgacccc 9645755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 10359695 - 10359752
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||  ||||||||||| ||||| ||||||||||||||||||||    
T  10359695 agagagaaaaagatgaagttgggtgatttcaggtcaaaaattgacccaaaaccacccc 10359752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 35965124 - 35965181
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||||||||||| |||||||||| || || ||||||||||||||||||||    
T  35965124 agagagaaaaagatgaagagaggtgatttcaggtaaaaaattgacccaaaaccacccc 35965181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 38706859 - 38706916
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||| ||||||||| |  |||||||||||||||||||||||||    
T  38706859 agagagaaaaagatgaagaagggtgattttagatcaagaattgacccaaaaccacccc 38706916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 50766660 - 50766713
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacc 67  Q
    |||||||||||||||||||| ||||||||  |||||||||||||||||||||||    
T  50766660 agagaaaaagatgaagagggatgatttcagatcaagaattgacccaaaaccacc 50766713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 25273806 - 25273758
Alignment:
Q  21 aagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||    
T  25273806 aagatgaagaggggtgatttcaggtcaagaattgatccaaaaccacccc 25273758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 6972743 - 6972692
Alignment:
Q  18 aaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||||| ||||||||||  |||||||||||||||||||||||||    
T  6972743 aaaaagatgaagagaggtgatttcagatcaagaattgacccaaaaccacccc 6972692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 9283849 - 9283794
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||| |||||||||||||||||||| || ||| |||||||||||||||||||    
T  9283849 agagaaaacgatgaagaggggtgatttcaggttaagtattgacccaaaaccacccc 9283794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 1531839 - 1531789
Alignment:
Q  19 aaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||| |||||||||||||||| ||||||||||||||||| ||||||||    
T  1531839 aaaagataaagaggggtgatttcaggtcaagaattgacccaataccacccc 1531789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 37188743 - 37188795
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccac 66  Q
    ||||||||||||||||| | ||||||||| ||||| |||||||||||||||||    
T  37188743 agagaaaaagatgaagatgagtgatttcaggtcaataattgacccaaaaccac 37188795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 2115739 - 2115794
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||||||||   ||||||||| ||||| ||||||||||||||||||||    
T  2115739 agagaaaaagatgaagaaaagtgatttcaggtcaataattgacccaaaaccacccc 2115794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 12265389 - 12265338
Alignment:
Q  18 aaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||| ||||| |||||||| |||| ||||||    
T  12265389 aaaaagatgaagaggggtgatttcaggtcaaaaattgaccaaaaatcacccc 12265338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 43444331 - 43444276
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||| |||||||||||  |||| |||||||||||||| |||||    
T  43444331 agagaaaaagatgaagatgggtgatttcagatcaaaaattgacccaaaactacccc 43444276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 53616802 - 53616849
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaa 61  Q
    |||||||| ||||||||| |||||||||| ||||||||||||||||||    
T  53616802 agagaaaacgatgaagagtggtgatttcaggtcaagaattgacccaaa 53616849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 5333608 - 5333658
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaa 62  Q
    ||||||||||||||||||| | ||||||||| ||||| |||||||||||||    
T  5333608 agagagaaaaagatgaagatgtgtgatttcaggtcaaaaattgacccaaaa 5333658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 51317926 - 51317868
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtc-aagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||| | ||||||||| ||| |||||||||||||||| ||||||    
T  51317926 agagagaaaaagatgaagatgagtgatttcaggtcaaagaattgacccaaaatcacccc 51317868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 21090093 - 21090036
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||| | |||||||||  ||||  |||||||||||||||||||    
T  21090093 agagagaaaaagatgaagatgagtgatttcagatcaaagattgacccaaaaccacccc 21090036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 44947327 - 44947286
Alignment:
Q  28 agaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  44947327 agagaggtgatttcaggtcaagaattgacccaaaaccacccc 44947286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 4643798 - 4643739
Alignment:
Q  12 agagagaaaaagatgaagagggg--tgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||||||||||||||  |||||||| ||||| |||| ||| |||||||||||    
T  4643798 agagagaaaaagatgaagaggggggtgatttcaggtcaaaaattcacctaaaaccacccc 4643739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 27593989 - 27594042
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    |||||||||||||||||||| |||||||| ||||| |||||||| |||| |||||    
T  27593989 agagaaaaagatgaagaggg-tgatttcatgtcaaaaattgacctaaaatcaccc 27594042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 50179698 - 50179654
Alignment:
Q  25 tgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||| | ||||||||| || |||||||||||||||||||||||    
T  50179698 tgaagatgagtgatttcaggttaagaattgacccaaaaccacccc 50179654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 51868794 - 51868851
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  51868794 agagagaaaaagatgaagaggggtgatttcaggtcaagaattaacccaaaaccacccc 51868851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 51871796 - 51871739
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  51871796 agagagaaaaagatgaagaggggtgattttaggtcaagaattgacccaaaaccacccc 51871739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 25728110 - 25728164
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  25728110 agagaaaaagatgaagaggagtgatttcaggtcaagaattgacccaaaaccaccc 25728164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 50272291 - 50272345
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  50272291 agagaaaaagatgaataggggtgatttcaggtcaagaattgacccaaaaccaccc 50272345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 9172420 - 9172363
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  9172420 agagaaaaaaatatgaagaggggtgatttcaggtcaagaattgacccaaaaccacccc 9172363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 9180402 - 9180345
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  9180402 agagaaaaaaatatgaagaggggtgatttcaggtcaagaattgacccaaaaccacccc 9180345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 25406433 - 25406490
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||    
T  25406433 agagagaaaaagatgaagaggtgtgatttcaggtcaagaattgacccaaaatcacccc 25406490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 33291574 - 33291625
Alignment:
Q  18 aaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  33291574 aaaaaaatgaagaggggtgatttcaggtcaagaattgacccaaaaccacccc 33291625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 27872671 - 27872610
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccccaaga 73  Q
    |||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||||| ||||    
T  27872671 agagcgaaaaagatgaagatgggtgatttcatgtcaaaaattgacccaaaaccacccgaaga 27872610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 30818494 - 30818551
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||||    
T  30818494 agagagaaaaagatgaagatgggtgatttcaggtcaataattgacccaaaactacccc 30818551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 45426211 - 45426268
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||| |  ||||||||||| |||||||||||||||||||||||||    
T  45426211 agagagaaaaagatgaaaataggtgatttcaaatcaagaattgacccaaaaccacccc 45426268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 5701187 - 5701140
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaa 61  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||    
T  5701187 agagaaaaagatgaagaggggtgatttcaggtcaagtattgacccaaa 5701140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 7342648 - 7342597
Alignment:
Q  18 aaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||||||||||    
T  7342648 aaaaatatgaagaggggtgatttcaggtcaaaaattgacccaaaaccacccc 7342597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 20266232 - 20266177
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||| ||||||||| |  |||||||||||||||||||||||||    
T  20266232 agagaaaaagatgaagatgggtgattttagatcaagaattgacccaaaaccacccc 20266177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 28035071 - 28035016
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacc 67  Q
    ||||||||||||||||||| | ||||||||| ||||| ||||||||||||||||||    
T  28035071 agagagaaaaagatgaagatgagtgatttcaggtcaataattgacccaaaaccacc 28035016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 5324706 - 5324756
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaa 62  Q
    |||||||||||||||||||| ||||||| || |||||||||||||||||||    
T  5324706 agagagaaaaagatgaagagaggtgattccaggtcaagaattgacccaaaa 5324756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 19723259 - 19723209
Alignment:
Q  18 aaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    ||||| |||||||| |||||||||||||||| |||||||||||||||||||    
T  19723259 aaaaatatgaagagaggtgatttcaagtcaataattgacccaaaaccaccc 19723209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 14545450 - 14545397
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacc 67  Q
    ||||||||||||||||| | ||||||||| ||||||||||||| ||||||||||    
T  14545450 agagaaaaagatgaagatgagtgatttcaggtcaagaattgacacaaaaccacc 14545397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 18569459 - 18569516
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||||||||||  |||||||||  ||||| ||||||||||||||||||||    
T  18569459 agagagaaaaagatgaagacaggtgatttcttgtcaaaaattgacccaaaaccacccc 18569516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 19716048 - 19716100
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacc 67  Q
    |||||||||||||||||||| ||||||||  |||||||||||||||||||||||    
T  19716048 agagaaaaagatgaagaggg-tgatttcagatcaagaattgacccaaaaccacc 19716100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 40646616 - 40646563
Alignment:
Q  16 agaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||| | ||||||| | ||||||||||||||||||||||||||    
T  40646616 agaaaaagatgaagatgagtgattttaggtcaagaattgacccaaaaccacccc 40646563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 40881162 - 40881215
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaacca 65  Q
    ||||||||||||||||||| | ||||||| | ||||||||||||||||||||||    
T  40881162 agagagaaaaagatgaagatgagtgattttaggtcaagaattgacccaaaacca 40881215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 48365899 - 48365956
Alignment:
Q  11 cagagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    ||||||||||||||||||||  ||||||||||  |||| |||||||||||||||||||    
T  48365899 cagagagaaaaagatgaagataggtgatttcatttcaaaaattgacccaaaaccaccc 48365956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 7997717 - 7997662
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||| |||||||||||  |||| |||| |||||||||||||||    
T  7997717 agagaaaaagatgaagaagggtgatttcagatcaaaaattaacccaaaaccacccc 7997662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 30879005 - 30878950
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||||||||| | |||| ||| ||||| ||||||||||||||||||||    
T  30879005 agagaaaaagatgaagagagatgatctcaggtcaaaaattgacccaaaaccacccc 30878950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 35584772 - 35584827
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||| | ||||||||| || |||||||||||||||| ||||||    
T  35584772 agagaaaaagatgaagatgagtgatttcaggttaagaattgacccaaaatcacccc 35584827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 38520682 - 38520739
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||| | ||||||||| || || |||||| |||||||||||||    
T  38520682 agagagaaaaagatgaagatgagtgatttcaggtaaaaaattgatccaaaaccacccc 38520739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 45805958 - 45806015
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||| |||||  ||||||||||  |||| ||||||||||||||||||||    
T  45805958 agagagaaaaagaggaagaaaggtgatttcagatcaaaaattgacccaaaaccacccc 45806015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 50166252 - 50166305
Alignment:
Q  16 agaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||| ||||||||  |||||| ||||| ||||||||||||||||||||    
T  50166252 agaaaaagataaagaggggcaatttcaggtcaataattgacccaaaaccacccc 50166305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 41081857 - 41081912
Alignment:
Q  16 agaaaaagatgaagaggggtgatttcaagtcaagaattga-cccaaaaccacccca 70  Q
    ||||||||||||||| | ||||||||| ||||| |||||| |||||||||||||||    
T  41081857 agaaaaagatgaagatgagtgatttcaggtcaaaaattgaccccaaaaccacccca 41081912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 44637347 - 44637297
Alignment:
Q  18 aaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||||||||| |||||||| | ||||| ||||||||||||||||||||    
T  44637347 aaaaagatgaagagaggtgattttatgtcaa-aattgacccaaaaccacccc 44637297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 50148302 - 50148247
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||||| |||||||| || ||||||||  || ||||||||||||||||||||||    
T  50148302 agagaaaaggatgaagatggatgatttcagatctagaattgacccaaaaccacccc 50148247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 7312247 - 7312304
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||||||||||  || |||| | ||||| |||||||||||||| |||||    
T  7312247 agagagaaaaagatgaagagaagtaattttaggtcaaaaattgacccaaaactacccc 7312304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 11453866 - 11453822
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacc 57  Q
    |||||||||||||||||||| | |||||||||||||| ||||||||    
T  11453866 agagagaaaaagatgaagagag-tgatttcaagtcaaaaattgacc 11453822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 361945 - 362000
Alignment:
Q  14 agagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||    
T  361945 agagaaaaagatggagaggggtgatttcaggtcaagaattgactcaaaaccacccc 362000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 8648 - 8591
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    ||||| ||||||||||| |||||||||||||||| ||||||| |||||||||||||||    
T  8648 agagataaaaagatgaaaaggggtgatttcaagttaagaattaacccaaaaccacccc 8591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 6266 - 6210
Alignment:
Q  12 agagagaaaaagatgaagaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    ||||| ||||||||||||||||||||||| | ||||||||||||||  |||||||||    
T  6266 agagaaaaaaagatgaagaggggtgattttaggtcaagaattgacctgaaaccaccc 6210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 157 - 113
Alignment:
Q  25 tgaagaggggtgatttcaagtcaagaattgacccaaaaccacccc 69  Q
    |||||| | ||||||||| || |||||||||||||||||||||||    
T  157 tgaagatgagtgatttcaggttaagaattgacccaaaaccacccc 113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 11051 - 11011
Alignment:
Q  28 agaggggtgatttcaagtcaagaattgacccaaaaccaccc 68  Q
    ||||||||||||| ||||||| ||||||||||||| |||||    
T  11051 agaggggtgattttaagtcaaaaattgacccaaaatcaccc 11011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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