View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1251_low_27 (Length: 302)
Name: NF1251_low_27
Description: NF1251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1251_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 6 - 273
Target Start/End: Original strand, 33876340 - 33876607
Alignment:
| Q |
6 |
agcaccacagatttgagacatcgattgtcgtttgattaagatcggacggtctatatttgagtttggtattttgaataataaaacaaacattacaattagc |
105 |
Q |
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| T |
33876340 |
agcaacacacatttgagacatcgattgtcgtttgattaagattggacggtctatatttgagtttggtattttgaataataaaacaaacattacaattagc |
33876439 |
T |
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| Q |
106 |
annnnnnnactatccaacaaagtgatccttaactttcagtttattaatcaactataaacatattcttttaaaatcaagtggatttattcatggttgttga |
205 |
Q |
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| T |
33876440 |
atttttttactatccaacaaagtgatccttaactttcggtttattaatcaactataaacatattcttttgaaatcaagtggatttattcatagttgttga |
33876539 |
T |
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| Q |
206 |
atcgagtaatctataactagacgttgtgatgtaagatatggtattcgcatgtataatattgcaataag |
273 |
Q |
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| T |
33876540 |
atcgagtaatctacaactagacgttgtgatgtaagatatggtattcacatgtataatattgcaataag |
33876607 |
T |
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