View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1251_low_3 (Length: 527)
Name: NF1251_low_3
Description: NF1251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1251_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 347; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 90 - 452
Target Start/End: Complemental strand, 13148701 - 13148339
Alignment:
| Q |
90 |
gattatcgtgaactggtggatcctaacatcatttttagccaacatgatcatgattattatcatgaagctatggatgatgatgtttacgatgaaaatgagg |
189 |
Q |
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| T |
13148701 |
gattatcgtgaactggtggatcctaacatcatttttagccaacatgatcatgattattatcatgaagttatgaatgatgatgtttacgatgaaaatgagg |
13148602 |
T |
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| Q |
190 |
aggctcctcagcttcatcataaacataatcatccaaaacttcatctttaacatgatgataataatcatgatcatcatggctaaaaatgttgttagggtcc |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13148601 |
aggctcctcagcttcatcataaacataatcatccaaaacttcatctttaacatgatgataataatcatgatcatcatggctaaaaatgttgttagggtcc |
13148502 |
T |
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| Q |
290 |
acccattcacgataatcagcatgcattcaaggttgtagattggattaggtattaatcgcttttttcaagaatgatttgagattaacctactatcgtcgtc |
389 |
Q |
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| T |
13148501 |
acccattcacgataatcagcatgcattcaaggttgtagattgtattaggtattaatcgcttttttcaagaatgatttgagattaacctactatcgtcgtc |
13148402 |
T |
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| Q |
390 |
gtcactagcagcatcttccttgtcccattctggtacttgtcattgtcgttgtttggtcatatt |
452 |
Q |
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| T |
13148401 |
gtcaccagcagcatcttccttgtcccattctggtacttgtcattgtcgttgtttggtcatatt |
13148339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 199 - 346
Target Start/End: Original strand, 13126166 - 13126317
Alignment:
| Q |
199 |
agcttcatcataaacataatcatccaaaacttcatctttaacatgatgataataatcatgatcatcatggctaaaaatgttgttagggtccacccattca |
298 |
Q |
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| T |
13126166 |
agcttcatcataaacatcatcatccatatcttcatctttaacatgataataataatcacgattatcatggctaaaaatgttcttaggatccactagttca |
13126265 |
T |
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| Q |
299 |
cgataatca----gcatgcattcaaggttgtagattggattaggtattaatc |
346 |
Q |
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| T |
13126266 |
cgataatcagcatgcatgcattcgaggttgtagattgcgttacgtattaatc |
13126317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 203 - 374
Target Start/End: Original strand, 13126850 - 13127025
Alignment:
| Q |
203 |
tcatcataaacataatcatccaaaacttcatctttaacatgatgataataatcatgatcatcatggctaaaaatgttgttagggtccacccattcacgat |
302 |
Q |
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| T |
13126850 |
tcatcataaacatcatcttccatatcttcatctttaacatgatgataataatcatgattatcagggctaaaaatgttcttaggatctagtagttcacgat |
13126949 |
T |
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| Q |
303 |
aatca----gcatgcattcaaggttgtagattggattaggtattaatcgcttttttcaagaatgatttgagattaa |
374 |
Q |
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| T |
13126950 |
aatcagtatgcatgcattcgagattgtagattgcattaggtattaatccctttttttgagaaagatttgggattaa |
13127025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 90 - 394
Target Start/End: Original strand, 13148485 - 13148792
Alignment:
| Q |
90 |
gattatcgtgaactggtggatcctaacatcatttttagccaacatgatcatgattattatcat------------gaagctatggatgatgatgtttacg |
177 |
Q |
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|||||||||||| |||||| ||||||| |||||||||||| |||||||||||||||||||| |||| | |||||||| ||||||| | |
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| T |
13148485 |
gattatcgtgaatgggtggaccctaacaacatttttagccatgatgatcatgattattatcatcatgttaaagatgaagttttggatgattatgtttatg |
13148584 |
T |
|
| Q |
178 |
atgaaaatgaggaggctcctcagcttcatcataaacataatcatccaaaacttcatctttaacatgatgataataatcatgatcatcatggctaaaaatg |
277 |
Q |
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| T |
13148585 |
atgaagctgaggagcctcctcattttcatcgtaaacatcatcattcataacttcat------------gataataatcatgatcatgttggctaaaaatg |
13148672 |
T |
|
| Q |
278 |
ttgttagggtccacccattcacgataatca----gcatgcattcaaggttgtagattggattaggtattaatcgcttttttcaagaatgatttgagatta |
373 |
Q |
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| T |
13148673 |
atgttaggatccaccagttcacgataatcatcatgcatgcattcaaggtcgtagattgtgttatgtattaatctctttttt-tggaaagatttgagatta |
13148771 |
T |
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| Q |
374 |
acctactatcgtcgtcgtcac |
394 |
Q |
| |
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| ||| ||||| |||||||| |
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| T |
13148772 |
atctatgatcgttgtcgtcac |
13148792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 199 - 291
Target Start/End: Complemental strand, 13126169 - 13126077
Alignment:
| Q |
199 |
agcttcatcataaacataatcatccaaaacttcatctttaacatgatgataataatcatgatcatcatggctaaaaatgttgttagggtccac |
291 |
Q |
| |
|
||||||||| |||| || |||||||| | ||||| |||||||||||||||||||| ||||||| | |||||| |||| ||||||||| ||||| |
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| T |
13126169 |
agcttcatcgtaaatatcatcatccatagcttcacctttaacatgatgataataaacatgatcgttatggctcaaaaagttgttaggatccac |
13126077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 149
Target Start/End: Complemental strand, 13126273 - 13126214
Alignment:
| Q |
90 |
gattatcgtgaactggtggatcctaacatcatttttagccaacatgatcatgattattat |
149 |
Q |
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|||||||||||||| ||||||||||| | |||||||||||| || ||| |||||||||| |
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| T |
13126273 |
gattatcgtgaactagtggatcctaagaacatttttagccatgataatcgtgattattat |
13126214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 244 - 316
Target Start/End: Complemental strand, 17983491 - 17983419
Alignment:
| Q |
244 |
atgataataatcatgatcatcatggctaaaaatgttgttagggtccacccattcacgataatcagcatgcatt |
316 |
Q |
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| T |
17983491 |
atgataataatcacgaccatcaaaggtaaaaatattatttggatccaccaattctcgataatcagcatgcatt |
17983419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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