View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1251_low_32 (Length: 269)
Name: NF1251_low_32
Description: NF1251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1251_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 45209580 - 45209645
Alignment:
| Q |
29 |
atgaagtgggggagaattcaaaacaagatacaataagagttgtatataaattgcaaagataaggtttc |
96 |
Q |
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| T |
45209580 |
atgaagtgggggagaattcaaaacaagatacaatatgagttg--tataaattgcaaagataaggtttc |
45209645 |
T |
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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 45209724 - 45209772
Alignment:
| Q |
174 |
gtctgagtaacacaaagctattttgttttccattctagctcaccatgtc |
222 |
Q |
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| T |
45209724 |
gtctgagtaacacaaagctattttgttttccattctagctcaccatgtc |
45209772 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 95
Target Start/End: Complemental strand, 675067 - 675003
Alignment:
| Q |
29 |
atgaagtgggggagaattcaaaacaagatacaataagagttgtatataaattgcaaagataaggttt |
95 |
Q |
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| T |
675067 |
atgaagtggaggagaattcaaaacaagatataacaagagttg--tataaattgcaaagatgaggttt |
675003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 27749598 - 27749659
Alignment:
| Q |
29 |
atgaagtgggggagaattcaaaacaagatacaataagagttgtatataaattgcaaagataaggttt |
95 |
Q |
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||||||||| | |||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
27749598 |
atgaagtggagaagaattcaaaacaagata---taagagttgtata--aattgcaaagataaggttt |
27749659 |
T |
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