View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1251_low_37 (Length: 253)
Name: NF1251_low_37
Description: NF1251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1251_low_37 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 26084311 - 26084063
Alignment:
| Q |
1 |
atctttttatgaacagcagagttcttttcaggacagtgaggaacgatgctaacctcagtaaattgaaaccggtaattattcacgtgaattaccaccgtga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26084311 |
atctttttatgaacagcagagttcttttcaggacagtgaggaacgatgctaacctcagtaaattgaaaccggttattattcacgtgaattaccaccgtga |
26084212 |
T |
|
| Q |
101 |
taagcttccgcgaatgaaagcagttgttgaatactatgttaatgggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26084211 |
taagcttccgcgaatgaaagcagttgttgaatactatgttaatgggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttc |
26084112 |
T |
|
| Q |
201 |
tatgtcttagttgttgttcaaaaacataaccaacacctatacctatgct |
249 |
Q |
| |
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||||||||||||||||||| ||||| |||||| || ||||| |||||| |
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| T |
26084111 |
tatgtcttagttgttgttctaaaacttaaccagcatgtatacttatgct |
26084063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 26096586 - 26096337
Alignment:
| Q |
1 |
atctttttatgaacagcagagttcttttcaggacagtgaggaacgatgctaacctcagtaaattgaaaccggtaattattcacgtgaattaccaccgtga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26096586 |
atctttttatgaacagcagagttcttttcaggacagtgaggaacgatgctaacctcagtaaattgaaaccggtaattattcacttgaattaccaccgtga |
26096487 |
T |
|
| Q |
101 |
taagcttccgcgaatgaaagcagttgttgaatactatgttaatgggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttc |
200 |
Q |
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|||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26096486 |
taagcttcggcgaatgaaagcaattgttgaatattatgttaatgggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttt |
26096387 |
T |
|
| Q |
201 |
tatgtcttagttgttgttcaaaaacataaccaa-cacctatacctatgct |
249 |
Q |
| |
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| ||||| ||||||||||||||||| | | ||| ||||||||| |||||| |
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| T |
26096386 |
tgtgtctaagttgttgttcaaaaactttagcaagcacctatacttatgct |
26096337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 26119873 - 26119628
Alignment:
| Q |
1 |
atctttttatgaacagcagagttcttttcaggacagtgaggaacgatgctaacctcagtaaattgaaaccggtaattattcacgtgaattaccaccgtga |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
26119873 |
atctttttatgaatagcagagttcttttcaagacagtgaggaacaatgctaacctcagtaaattgaaaccggttattattcacttgaattaccaccgtga |
26119774 |
T |
|
| Q |
101 |
taagcttccgcgaatgaaagcagttgttgaatactatgttaatgggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttc |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26119773 |
taagcttacgcgaatgaaagcagttgttgaatattatgttaatgggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttgt--- |
26119677 |
T |
|
| Q |
201 |
tatgtcttagttgttgttcaaaaacataaccaacacctatacctatgct |
249 |
Q |
| |
|
||||||| || |||||||||||||| |||| | ||||||||| |||||| |
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|
| T |
26119676 |
tatgtctaagctgttgttcaaaaacttaacgagcacctatacttatgct |
26119628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 32 - 249
Target Start/End: Complemental strand, 26075686 - 26075469
Alignment:
| Q |
32 |
gacagtgaggaacgatgctaacctcagtaaattgaaaccggtaattattcacgtgaattaccaccgtgataagcttccgcgaatgaaagcagttgttgaa |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26075686 |
gacagtgaggaacgatgctaacctcagtaaattgaaaccggttattattcacttgaattaccaccgtgataagcttcggcgaatgaaagcagttgttgaa |
26075587 |
T |
|
| Q |
132 |
tactatgttaatgggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttctatgtcttagttgttgttcaaaaacataacc |
231 |
Q |
| |
|
|| ||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26075586 |
tattatgttaatgggaactaagatgctctgaaaccttttcccgatggcacacatcgataaccttgtttctatgtcttagttgttgttcaaaaacataacc |
26075487 |
T |
|
| Q |
232 |
aacacctatacctatgct |
249 |
Q |
| |
|
||||| ||||| |||||| |
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| T |
26075486 |
aacacgtatacttatgct |
26075469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 26126530 - 26126282
Alignment:
| Q |
1 |
atctttttatgaacagcagagttcttttcaggacagtgaggaacgatgctaacctcagtaaattgaaaccggtaattattcacgtgaattaccaccgtga |
100 |
Q |
| |
|
||||||||||||| || | ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||| |
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|
| T |
26126530 |
atctttttatgaatagtaaagttcttttcaagacagtgaggaacgatgctaaactcagtaaattgaaaccggtaattattcacttgaattaccaccctga |
26126431 |
T |
|
| Q |
101 |
taagcttccgcgaatgaaagcagttgttgaatactatgttaatgggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||| |
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| T |
26126430 |
taagcttccgcgaatgaaagcagttgttgaatactatgttaatgggaaccaagatgctctcaaacctttctcggatggcacaccttgataaccttgtttc |
26126331 |
T |
|
| Q |
201 |
tatgtcttagttgttgttcaaaaacataaccaacacctatacctatgct |
249 |
Q |
| |
|
| ||||||||||||| |||||| || |||| | ||||||||| |||||| |
|
|
| T |
26126330 |
tgtgtcttagttgttcttcaaatacttaacgagcacctatacttatgct |
26126282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 3 - 210
Target Start/End: Complemental strand, 26064584 - 26064377
Alignment:
| Q |
3 |
ctttttatgaacagcagagttcttttcaggacagtgaggaacgatgctaacctcagtaaattgaaaccggtaattattcacgtgaattaccaccgtgata |
102 |
Q |
| |
|
||||||||||| || | ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
26064584 |
ctttttatgaatagtaaagttcttttcaagacagtgaggaacgatgctaaactcagtaaattgaaaccggtaattattcacgtgaattaccaccctgata |
26064485 |
T |
|
| Q |
103 |
agcttccgcgaatgaaagcagttgttgaatactatgttaatgggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttcta |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||| || | ||||||||||||| |
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|
| T |
26064484 |
agcttccgcgaatgaaagcagttgttgaatattatgttaatgggaaccaagatgctctcaaacctttccctgatggctcaaagtggtaaccttgtttctg |
26064385 |
T |
|
| Q |
203 |
tgtcttag |
210 |
Q |
| |
|
|||||||| |
|
|
| T |
26064384 |
tgtcttag |
26064377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 26035938 - 26035724
Alignment:
| Q |
1 |
atctttttatgaacagcagagttcttttcaggacagtgaggaacgatgctaacctcagtaaattgaaaccggtaattattcacgtgaattaccaccgtga |
100 |
Q |
| |
|
|||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||| |
|
|
| T |
26035938 |
atctctttatgaacagcaaagttcttttcaagacagtgaggaacgatgctaacctcagtaaattgaaaccagtaattgttcacgtgaattaccaccctga |
26035839 |
T |
|
| Q |
101 |
taagcttccgcgaatgaaagcagttgttgaatactatgttaatgggaaccaagatgctctcaaaccttttcccgatggcacacctcgataaccttgtttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||| | |||||| || | | ||||||| |||| |
|
|
| T |
26035838 |
taagcttccgcgaatgaaagcagttgtcgaatattatgtcaatgggaaacaagatgctctcaaacctttctctgatggctcagattggtaaccttatttc |
26035739 |
T |
|
| Q |
201 |
tatgtcttagttgtt |
215 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26035738 |
cgtgtcttagttgtt |
26035724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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