View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1251_low_4 (Length: 524)

Name: NF1251_low_4
Description: NF1251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1251_low_4
NF1251_low_4
[»] chr6 (9 HSPs)
chr6 (82-496)||(9412064-9412478)
chr6 (149-195)||(28935345-28935391)
chr6 (161-241)||(7132324-7132407)
chr6 (161-241)||(7135247-7135330)
chr6 (161-241)||(7138170-7138253)
chr6 (145-196)||(6410698-6410749)
chr6 (146-196)||(6423909-6423959)
chr6 (155-196)||(6395550-6395591)
chr6 (83-120)||(6596310-6596347)
[»] chr1 (1 HSPs)
chr1 (83-260)||(7555139-7555319)
[»] chr8 (3 HSPs)
chr8 (146-258)||(17642872-17642987)
chr8 (146-260)||(17635591-17635708)
chr8 (154-263)||(18314570-18314682)
[»] chr4 (8 HSPs)
chr4 (155-260)||(661871-661979)
chr4 (82-270)||(1755493-1755684)
chr4 (155-251)||(553772-553871)
chr4 (212-259)||(53760229-53760276)
chr4 (218-260)||(7225096-7225138)
chr4 (149-257)||(8186297-8186408)
chr4 (155-270)||(1533678-1533796)
chr4 (161-189)||(55907684-55907712)
[»] scaffold1155 (1 HSPs)
scaffold1155 (161-260)||(1821-1923)
[»] scaffold0345 (1 HSPs)
scaffold0345 (161-260)||(8293-8395)
[»] scaffold0105 (1 HSPs)
scaffold0105 (161-260)||(30584-30686)
[»] chr7 (4 HSPs)
chr7 (154-271)||(7977885-7978005)
chr7 (146-233)||(10615717-10615807)
chr7 (146-257)||(10168985-10169102)
chr7 (146-257)||(10176510-10176627)
[»] chr5 (3 HSPs)
chr5 (218-271)||(32268614-32268667)
chr5 (146-263)||(41900426-41900546)
chr5 (221-270)||(41886532-41886581)
[»] chr3 (1 HSPs)
chr3 (215-260)||(51763325-51763370)
[»] chr2 (2 HSPs)
chr2 (155-263)||(45244780-45244891)
chr2 (161-189)||(1036620-1036648)


Alignment Details
Target: chr6 (Bit Score: 395; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 82 - 496
Target Start/End: Original strand, 9412064 - 9412478
Alignment:
Q  82 aagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaacccattcttgagcaagtgaatgaggttaaagttgtaatattttgggag 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  9412064 aagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaacccattcttgaggaagtgaatgaggttaaagttgtaatattttgggag 9412163  T
Q  182 aaagctcgcaacccagcgggaatggtgcgatggttggagagattaagtgatgagagtttcaatggaaaacgagagatttgaccgagaagcacattaaaat 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9412164 aaagctcgcaacccagcgggaatggtgcgatggttggagagattaagtgatgagagtttcaatggaaaacgagagatttgaccgagaagcacattaaaat 9412263  T
Q  282 caatgcttttgtagcgcttgattttgagagaggtgaggttggtgaacctaccgagtatgctaccgagaaaaggacctattccgttgttgtagaccgtaag 381  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9412264 caatgcgtttgtagcgcttgattttgagagaggtgaggttggtgaacctaccgagtatgctaccgagaaaaggacctattccgttgttgtagaccgtaag 9412363  T
Q  382 tgagatgaaaagacggttggtgatggagagaaacaacttggagacaagcgagagagacttcaagtcgcgatagttagcaccattgttgaggaatttgaag 481  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  9412364 tgagatgacaagacggttggtgatggagagaaacaacttggagacaagcgagagagacttcaactcgcgatagttagcaccatcgttgaggaatttgaag 9412463  T
Q  482 atactttcccaacat 496  Q
    |||||||||||||||    
T  9412464 atactttcccaacat 9412478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Original strand, 28935345 - 28935391
Alignment:
Q  149 gtgaatgaggttaaagttgtaatattttgggagaaagctcgcaaccc 195  Q
    |||| |||||||||||||||||| ||||||||||| |||||||||||    
T  28935345 gtgagtgaggttaaagttgtaatgttttgggagaaggctcgcaaccc 28935391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 7132324 - 7132407
Alignment:
Q  161 aaagttgtaatattttgggagaaagctcgcaaccca---gcgggaatggtgcgatggttggagagattaagtgatgagagtttc 241  Q
    ||||||||||| ||||||||||||||||||||||||   || |||| |||| | |||||||||| | |||| |||| |||||||    
T  7132324 aaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagtttc 7132407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 7135247 - 7135330
Alignment:
Q  161 aaagttgtaatattttgggagaaagctcgcaaccca---gcgggaatggtgcgatggttggagagattaagtgatgagagtttc 241  Q
    ||||||||||| ||||||||||||||||||||||||   || |||| |||| | |||||||||| | |||| |||| |||||||    
T  7135247 aaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagtttc 7135330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 7138170 - 7138253
Alignment:
Q  161 aaagttgtaatattttgggagaaagctcgcaaccca---gcgggaatggtgcgatggttggagagattaagtgatgagagtttc 241  Q
    ||||||||||| ||||||||||||||||||||||||   || |||| |||| | |||||||||| | |||| |||| |||||||    
T  7138170 aaagttgtaatgttttgggagaaagctcgcaacccatttgcaggaaaggtgtgttggttggagatactaagcgatgtgagtttc 7138253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 6410698 - 6410749
Alignment:
Q  145 gcaagtgaatgaggttaaagttgtaatattttgggagaaagctcgcaaccca 196  Q
    ||||||||| ||||| ||||||||||| |||||||||||| || ||||||||    
T  6410698 gcaagtgaaagaggtcaaagttgtaatgttttgggagaaaacttgcaaccca 6410749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 6423909 - 6423959
Alignment:
Q  146 caagtgaatgaggttaaagttgtaatattttgggagaaagctcgcaaccca 196  Q
    |||||||  ||||| |||||||| || ||||||||||||||||||||||||    
T  6423909 caagtgagagaggtcaaagttgttatgttttgggagaaagctcgcaaccca 6423959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 6395550 - 6395591
Alignment:
Q  155 gaggttaaagttgtaatattttgggagaaagctcgcaaccca 196  Q
    ||||| |||||||||||||||||||||| |||| ||||||||    
T  6395550 gaggtcaaagttgtaatattttgggagagagcttgcaaccca 6395591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 6596347 - 6596310
Alignment:
Q  83 agcaaagggaaacattcagcaatgagtaacaagtcatt 120  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  6596347 agcaatgggaaacaatcagcaatgagtaacaagtcatt 6596310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 83 - 260
Target Start/End: Original strand, 7555139 - 7555319
Alignment:
Q  83 agcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaacccattcttgagcaagtgaatgaggttaaagttgtaatattttgggaga 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || ||||||| |||||||||||||||||||||||||||||    
T  7555139 agcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaatattttgggaga 7555238  T
Q  183 aagctcgcaaccca---gcgggaatggtgcgatggttggagagattaagtgatgagagtttcaatggaaaacgagagattt 260  Q
    |||||||||| |||   || || |||||| | |||||||| | || ||||||||  || |||||||| |||| ||||||||    
T  7555239 aagctcgcaatccaattgcagggatggtgggttggttggaaatatcaagtgatgttaggttcaatgggaaacaagagattt 7555319  T

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Target: chr8 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 146 - 258
Target Start/End: Complemental strand, 17642987 - 17642872
Alignment:
Q  146 caagtgaatgaggttaaagttgtaatattttgggagaaagctcgcaaccca---gcgggaatggtgcgatggttggagagattaagtgatgagagtttca 242  Q
    |||||||  ||||| |||||||||||||| |||||||||||| | ||||||   | |||||||||| |||||||||||||||| ||||||| ||||||||    
T  17642987 caagtgagagaggtcaaagttgtaatattctgggagaaagcttgtaacccattggtgggaatggtgagatggttggagagattgagtgatgtgagtttca 17642888  T
Q  243 atggaaaacgagagat 258  Q
    ||||||||| ||||||    
T  17642887 atggaaaacaagagat 17642872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 146 - 260
Target Start/End: Complemental strand, 17635708 - 17635591
Alignment:
Q  146 caagtgaatgaggttaaagttgtaatattttgggagaaagctcgcaaccca---gcgggaatggtgcgatggttggagagattaagtgatgagagtttca 242  Q
    |||||||  ||||| ||||||||||||||  ||||||||||||| ||||||   |  ||||||||| | |||||||| ||||| ||||||  ||||||||    
T  17635708 caagtgagagaggtcaaagttgtaatattccgggagaaagctcgtaacccattagttggaatggtgagttggttggacagattgagtgatatgagtttca 17635609  T
Q  243 atggaaaacgagagattt 260  Q
    |||||||| |||||||||    
T  17635608 atggaaaaggagagattt 17635591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 154 - 263
Target Start/End: Complemental strand, 18314682 - 18314570
Alignment:
Q  154 tgaggttaaagttgtaatattttgggagaaagctcgcaaccca---gcgggaatggtgcgatggttggagagattaagtgatgagagtttcaatggaaaa 250  Q
    |||||| ||||||||||||||||| |||||| |||| || |||   |||||||||||| | ||   ||||||||  ||| ||  |||||||||||| |||    
T  18314682 tgaggtcaaagttgtaatattttgagagaaaactcgtaagccatttgcgggaatggtgggttgacaggagagatcgagtcatttgagtttcaatgggaaa 18314583  T
Q  251 cgagagatttgac 263  Q
     ||||||||||||    
T  18314582 agagagatttgac 18314570  T

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Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 155 - 260
Target Start/End: Original strand, 661871 - 661979
Alignment:
Q  155 gaggttaaagttgtaatattttgggagaaagctcgcaaccc---agcgggaatggtgcgatggttggagagattaagtgatgagagtttcaatggaaaac 251  Q
    ||||||||||||||||||| |||||||||||||||||| ||   |||||||||||||   |||||||||||||| ||||| | || |||||| ||| |||    
T  661871 gaggttaaagttgtaatatattgggagaaagctcgcaaaccattagcgggaatggtggtttggttggagagattgagtgacgtgattttcaacggagaac 661970  T
Q  252 gagagattt 260  Q
    |||||||||    
T  661971 gagagattt 661979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 82 - 270
Target Start/End: Original strand, 1755493 - 1755684
Alignment:
Q  82 aagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaacccattcttgagcaagtgaatgaggttaaagttgtaatattttgggag 181  Q
    ||||||||||||||| ||||||||||| || ||||||||| ||| || |  | | ||  | || || ||||  ||||| ||||||||||| ||||| |||    
T  1755493 aagcaaagggaaacagtcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagttgtaatcttttgagag 1755592  T
Q  182 aaagctcgcaaccca---gcgggaatggtgcgatggttggagagattaagtgatgagagtttcaatggaaaacgagagatttgaccgagaag 270  Q
    |||||| |||||||    | |||||||| | | ||||||||||||||||  ||||  ||||||||||| |||||||||||||| | ||||||    
T  1755593 aaagcttgcaaccctttggtgggaatggcgtgttggttggagagattaaacgatgtaagtttcaatgggaaacgagagatttggcagagaag 1755684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 251
Target Start/End: Original strand, 553772 - 553871
Alignment:
Q  155 gaggttaaagttgtaatattttgggagaaagctcgcaaccca---gcgggaatggtgcgatggttggagagattaagtgatgagagtttcaatggaaaac 251  Q
    ||||| ||||||||||| ||||||||||||||||||||||||   |||||||||||| | |  | ||||||||  ||||||| ||| |||||||||||||    
T  553772 gaggtcaaagttgtaatgttttgggagaaagctcgcaacccatttgcgggaatggtgggtttttgggagagatcgagtgatgtgaggttcaatggaaaac 553871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 53760276 - 53760229
Alignment:
Q  212 tggttggagagattaagtgatgagagtttcaatggaaaacgagagatt 259  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||||||    
T  53760276 tggttggagagattgagtgatgtgagtttcaatgggaaacgagagatt 53760229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 7225138 - 7225096
Alignment:
Q  218 gagagattaagtgatgagagtttcaatggaaaacgagagattt 260  Q
    |||| ||||||||||| ||||||||||||||||||||||||||    
T  7225138 gagatattaagtgatgtgagtttcaatggaaaacgagagattt 7225096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 8186408 - 8186297
Alignment:
Q  149 gtgaatgaggttaaagttgtaatattttgggagaaagctcgcaaccca---gcgggaatggtgcgatggttggagagattaagtgatgagagtttcaatg 245  Q
    |||| |||||| ||||||||||||||| |||||| | ||||||| |||   || ||||||||| | | ||| |||||||| ||||||| ||| ||||| |    
T  8186408 gtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtgatgtgaggttcaacg 8186309  T
Q  246 gaaaacgagaga 257  Q
     |||||||||||    
T  8186308 aaaaacgagaga 8186297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 270
Target Start/End: Complemental strand, 1533796 - 1533678
Alignment:
Q  155 gaggttaaagttgtaatattttgggagaaagctcgcaaccc---agcgggaatggtgcgatggttggagagattaagtgatgagagtttcaatggaaaac 251  Q
    ||||||||||||||||| ||||||||||||  |||||| ||   ||||||||| ||| | ||||  || | || ||| |||| || |||||||||||||     
T  1533796 gaggttaaagttgtaattttttgggagaaatatcgcaagcctttagcgggaatcgtgggttggtcagataaatcaagggatgtgattttcaatggaaaaa 1533697  T
Q  252 gagagatttgaccgagaag 270  Q
    ||||||||| || ||||||    
T  1533696 gagagattttacagagaag 1533678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 189
Target Start/End: Complemental strand, 55907712 - 55907684
Alignment:
Q  161 aaagttgtaatattttgggagaaagctcg 189  Q
    |||||||||||||||||||||||||||||    
T  55907712 aaagttgtaatattttgggagaaagctcg 55907684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 260
Target Start/End: Complemental strand, 1923 - 1821
Alignment:
Q  161 aaagttgtaatattttgggagaaagctcgcaaccca---gcgggaatggtgcgatggttggagagattaagtgatgagagtttcaatggaaaacgagaga 257  Q
    |||||||||||||||||||| ||| |||||||||||   ||||||||  || | |||| ||||||||| ||||||| ||| |||||||| ||||||||||    
T  1923 aaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgagaga 1824  T
Q  258 ttt 260  Q
    |||    
T  1823 ttt 1821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 260
Target Start/End: Original strand, 8293 - 8395
Alignment:
Q  161 aaagttgtaatattttgggagaaagctcgcaaccca---gcgggaatggtgcgatggttggagagattaagtgatgagagtttcaatggaaaacgagaga 257  Q
    |||||||||||||||||||| ||| |||||||||||   ||||||||  || | |||| ||||||||| ||||||| ||| |||||||| ||||||||||    
T  8293 aaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgagaga 8392  T
Q  258 ttt 260  Q
    |||    
T  8393 ttt 8395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 161 - 260
Target Start/End: Complemental strand, 30686 - 30584
Alignment:
Q  161 aaagttgtaatattttgggagaaagctcgcaaccca---gcgggaatggtgcgatggttggagagattaagtgatgagagtttcaatggaaaacgagaga 257  Q
    |||||||||||||||||||| ||| |||||||||||   ||||||||  || | |||| ||||||||| ||||||| ||| |||||||| ||||||||||    
T  30686 aaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttcaatgggaaacgagaga 30587  T
Q  258 ttt 260  Q
    |||    
T  30586 ttt 30584  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 154 - 271
Target Start/End: Original strand, 7977885 - 7978005
Alignment:
Q  154 tgaggttaaagttgtaatattttgggagaaagctcgcaaccc---agcgggaatggtgcgatggttggagagattaagtgatgagagtttcaatggaaaa 250  Q
    |||||| ||||||| |||||||||||||||| || |||||||   ||| ||||||||  | |||||||||||||| ||||| | || ||||||||| |||    
T  7977885 tgaggtcaaagttgcaatattttgggagaaaactggcaacccataagccggaatggtagggtggttggagagattgagtgacgtgattttcaatgggaaa 7977984  T
Q  251 cgagagatttgaccgagaagc 271  Q
    | ||| ||||| | |||||||    
T  7977985 caagaaatttggcggagaagc 7978005  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 10615717 - 10615807
Alignment:
Q  146 caagtgaatgaggttaaagttgtaatattttgggagaaagctcgcaaccca---gcgggaatggtgcgatggttggagagattaagtgatg 233  Q
    |||||||  ||||| ||||||||||| ||||||||||||||||| ||||||   |||||||  ||| | |||||||| | |||||||||||    
T  10615717 caagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgcgggaactgtgggttggttggaaatattaagtgatg 10615807  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 257
Target Start/End: Complemental strand, 10169102 - 10168985
Alignment:
Q  146 caagtgaatgaggttaaagttgtaatattttgggagaaagctcgcaaccca---gcgggaatggtgcgatggttggagagattaagtgatgagagt---t 239  Q
    |||||||  ||||| |||||| |||||||||| |||||| |||||||||||   |||||||||||||  |||| ||| | ||  ||||||| ||||   |    
T  10169102 caagtgagagaggtcaaagttctaatattttgagagaaaactcgcaacccatttgcgggaatggtgcattggtaggaaatatcgagtgatgtgagtttct 10169003  T
Q  240 tcaatggaaaacgagaga 257  Q
    |||| |||||||||||||    
T  10169002 tcaaaggaaaacgagaga 10168985  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 257
Target Start/End: Complemental strand, 10176627 - 10176510
Alignment:
Q  146 caagtgaatgaggttaaagttgtaatattttgggagaaagctcgcaaccca---gcgggaatggtgcgatggttggagagattaagtgatgagagt---t 239  Q
    |||||||  ||||| |||||| |||||||||| |||||| |||||||||||   |||||||||||||  |||| ||| | ||  ||||||| ||||   |    
T  10176627 caagtgagagaggtcaaagttctaatattttgagagaaaactcgcaacccatttgcgggaatggtgcattggtaggaaatatcgagtgatgtgagtttct 10176528  T
Q  240 tcaatggaaaacgagaga 257  Q
    |||| |||||||||||||    
T  10176527 tcaaaggaaaacgagaga 10176510  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 271
Target Start/End: Original strand, 32268614 - 32268667
Alignment:
Q  218 gagagattaagtgatgagagtttcaatggaaaacgagagatttgaccgagaagc 271  Q
    |||||||| ||||| | ||||||||||||||||||||||||||||| |||||||    
T  32268614 gagagattgagtgacgtgagtttcaatggaaaacgagagatttgacagagaagc 32268667  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 263
Target Start/End: Complemental strand, 41900546 - 41900426
Alignment:
Q  146 caagtgaatgaggttaaagttgtaatattttgggagaaagctcgcaaccca---gcgggaatggtgcgatggttggagagattaagtgatgagagtttca 242  Q
    |||||||  ||||| ||||||||||| |||| ||| |||||||| ||||||   ||||| |||  ||  ||||  ||||| || ||||||| ||||||||    
T  41900546 caagtgagagaggtcaaagttgtaatctttttggaaaaagctcgaaacccaaatgcggggatgacgctttggtctgagagtttgagtgatgtgagtttca 41900447  T
Q  243 atggaaaacgagagatttgac 263  Q
    |||||||| ||||||||||||    
T  41900446 atggaaaatgagagatttgac 41900426  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 270
Target Start/End: Complemental strand, 41886581 - 41886532
Alignment:
Q  221 agattaagtgatgagagtttcaatggaaaacgagagatttgaccgagaag 270  Q
    ||||| ||||||| ||||||||||||||||  ||||||||| ||||||||    
T  41886581 agattgagtgatgtgagtttcaatggaaaattagagatttggccgagaag 41886532  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 51763370 - 51763325
Alignment:
Q  215 ttggagagattaagtgatgagagtttcaatggaaaacgagagattt 260  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||    
T  51763370 ttggagagattaagtgatgtgagtttcaatgggaaacgagagattt 51763325  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 263
Target Start/End: Complemental strand, 45244891 - 45244780
Alignment:
Q  155 gaggttaaagttgtaatattttgggagaaagctcgcaaccca---gcgggaatggtgcgatggttggagagattaagtgatgagagtttcaatggaaaac 251  Q
    ||||| ||| || ||||| |||||||||||||| ||||||||   |||||||||||||  |||| ||||||||  ||||| |||| ||||||||| ||      
T  45244891 gaggtcaaatttctaatagtttgggagaaagcttgcaacccattcgcgggaatggtgctttggtcggagagatagagtgacgagattttcaatggtaact 45244792  T
Q  252 gagagatttgac 263  Q
    ||||||||||||    
T  45244791 gagagatttgac 45244780  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 189
Target Start/End: Complemental strand, 1036648 - 1036620
Alignment:
Q  161 aaagttgtaatattttgggagaaagctcg 189  Q
    |||||||||||||||||||||||||||||    
T  1036648 aaagttgtaatattttgggagaaagctcg 1036620  T

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