View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1251_low_40 (Length: 249)
Name: NF1251_low_40
Description: NF1251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1251_low_40 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 4 - 249
Target Start/End: Complemental strand, 11843973 - 11843728
Alignment:
| Q |
4 |
ctccaacaatatagggattgccggtgtaacccgaggagcattgacatttccgaccagtggttctgttatttaaagatgtaacattggaatcataacaata |
103 |
Q |
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| T |
11843973 |
ctccaacaatgtagggattgccggtgtaacccgaggagcattgacatttccgaccagtggttctgttatttaaagatgtaactttggaatcataacaata |
11843874 |
T |
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| Q |
104 |
tgaatctgaaggaagttgaaatgtcgaattaaccaaaatttcccactcaagcattgctggtgcatactccatattccccaactcattaaaagtacgcaaa |
203 |
Q |
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| T |
11843873 |
tgaatctgaaggaagttgaaatgtcgaattaaccaaaatttcccactcaagcattgctggtgcatactccatattccccaactcattaaaagtactcaaa |
11843774 |
T |
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| Q |
204 |
tatgacccatcaaaagatatccaattatcacttaaaatcaaagcat |
249 |
Q |
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| T |
11843773 |
tatgacccatcaaaagatatccaattatcacttaaaatcaaagcat |
11843728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 194
Target Start/End: Complemental strand, 11848697 - 11848489
Alignment:
| Q |
4 |
ctccaacaatatagggattgccggtgtaacccgaggagcattgacatttccgaccagtggttctgttatttaaagatgtaacattggaatcataac---- |
99 |
Q |
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| T |
11848697 |
ctccagcaatgtagggattgccaaagtaacccgagaagcattggcattgccgaccagtgtttctgttatttatggatgtaacttgggaatcataacaatt |
11848598 |
T |
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| Q |
100 |
--aatatgaatctgaaggaagttgaaatgtcgaattaa------------ccaaaatttcccactcaagcattgctggtgcatactccatattccccaac |
185 |
Q |
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| T |
11848597 |
tgaatatgaatctgaaggaagttgaaatgtagaattaatcaacatatcattcaaaatttcccactcaagcattgctggtgcatactccatatcctccaac |
11848498 |
T |
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| Q |
186 |
tcattaaaa |
194 |
Q |
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| T |
11848497 |
ttattaaaa |
11848489 |
T |
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