View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1251_low_5 (Length: 479)
Name: NF1251_low_5
Description: NF1251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1251_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 22 - 345
Target Start/End: Complemental strand, 33166808 - 33166486
Alignment:
| Q |
22 |
caccacagaggaagataaaatcctcatccaatcatggctaaatatttctaaggatgcagttgtacgggggtaaatcaaagagcaaatgttttttggcaaa |
121 |
Q |
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| T |
33166808 |
caccccagaggaagataaactcctcatccaatcatggctaaatatttctaaggatgcagttgtacaggggtaaatcaaagagcaaatgttttttggcaaa |
33166709 |
T |
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| Q |
122 |
agaattgcagatggttataatgaacattgtggtcatttctttgcaaagggcccagtacaactaaaatctcgatggtcgaaggtgaattccataattaaaa |
221 |
Q |
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| T |
33166708 |
agaattgcagatggttataatgaacattgtggttatttccttgcaaagggaccagtacaactaaaatctcgatggtcgaaggtgaattccataattaaaa |
33166609 |
T |
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| Q |
222 |
aatttggagggtgctacaagcaagcctatccaagaagnnnnnnngtggtagcttatagtgatgtcatgggagatgcatattcaatctatactcaatatac |
321 |
Q |
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| T |
33166608 |
aatttggagggtgctacaagcaagcctatccaagaagaaaaaaagtggtagcttagagtgatgtcatgggagatgcatatt-aatctatactcaatatac |
33166510 |
T |
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| Q |
322 |
acatgaatgtttcatgttagagtt |
345 |
Q |
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| T |
33166509 |
acatgaatgtttcatgttagagtt |
33166486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 340 - 447
Target Start/End: Complemental strand, 33161524 - 33161417
Alignment:
| Q |
340 |
agagtttgcgtggagattgttaaaagatgaacctaaatagtcaaaccaatcacttgaaggagctagtaaaagaacaaagacttcggcttctggagcatac |
439 |
Q |
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| T |
33161524 |
agagtttgtgtggagattgttaaaagatgaacctaaatagtcaaaccaatcacttgaaggagctagtaaaagaacaaagacttcggcttctggagcatac |
33161425 |
T |
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| Q |
440 |
tcatcctc |
447 |
Q |
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| T |
33161424 |
ccatcctc |
33161417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 49281391 - 49281300
Alignment:
| Q |
54 |
catggctaaatatttctaaggatgcagttgtacgggggtaaatcaaagagcaaatgttttttggcaaaagaattgcagatggttataatgaacat |
148 |
Q |
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| T |
49281391 |
catggctaaatatttctacggatgcatttgta--ggggtaattcaaagagcaaatgctctttagc-aaataattacaaatggttataatgaacat |
49281300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 441
Target Start/End: Original strand, 34313183 - 34313286
Alignment:
| Q |
338 |
ttagagtttgcgtggagattgttaaaagatgaacctaaatagtcaaaccaatcacttgaaggagctagtaaaagaacaaagacttcggcttctggagcat |
437 |
Q |
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||||||| ||| ||| ||||||| |||||||||||||||| |||||| |||| |||||| || |||| ||||| |||| ||| ||||| ||||||| |
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| T |
34313183 |
ttagagtatgcatggcgattgttgaaagatgaacctaaatggtcaaatacatcatttgaagtaggcggtaagagaaccaagatttctgcttcaggagcat |
34313282 |
T |
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| Q |
438 |
actc |
441 |
Q |
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|||| |
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| T |
34313283 |
actc |
34313286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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