View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1251_low_8 (Length: 412)
Name: NF1251_low_8
Description: NF1251
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1251_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 29778016 - 29778372
Alignment:
| Q |
17 |
tgagatgaacaagaataggggagaccagaaaacaagtagaatcaataggttcttggtaactattaacatcatgggaagttcaggtcctataaggtttgtg |
116 |
Q |
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| T |
29778016 |
tgagaagaacaagaatagtggagaccagaaaacaagcagaatcaataggttcttggtaactattaacatcatgggaagttcgggtcctttaaggtttgtg |
29778115 |
T |
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| Q |
117 |
gtgaatgagaaagagcttgtttctggggtcattgatattactcttaaatcttatgcaagagaaggaaggcttcctcttcttggttttgaagctaccaatt |
216 |
Q |
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| T |
29778116 |
gtaaatgagaaagagcttgtttcaggggtcattgatactgctcttaaatcttatgcaagacaaggaaggcttcctgttcttggttttgaagctaccaatt |
29778215 |
T |
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| Q |
217 |
tctttctttaccatccaaattcaggatttgatggtatgatttcttacccttttggaaatttgttgtttccttttgcttttggtgcattataatttataag |
316 |
Q |
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| T |
29778216 |
tctttctttaccatccaaattcaggatttgatggtatgatttcttacccttttggaaatttcttgtttcc-tttccttttgttgca-------ttctaag |
29778307 |
T |
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| Q |
317 |
taacaatctttttggaaatgactttgcttcacgtagatctttaaaattgtgtaatttgaattgtc |
381 |
Q |
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| T |
29778308 |
taacactctttttggaaatgactttgcttcacgtagatctttaaaattctgtaatttgaattgtc |
29778372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 29782088 - 29782379
Alignment:
| Q |
17 |
tgagatgaacaagaataggggagaccagaaaacaagtagaatcaataggttcttggtaactattaacatcatgggaagttcaggtcctataaggtttgtg |
116 |
Q |
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| T |
29782088 |
tgagaagaacaagaataggggagaccaaaaaacaagcagaattaataagttcttggtcactattaacatcatgggaagttcgggtcctataaggtttgtt |
29782187 |
T |
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| Q |
117 |
gtgaatgagaaagagcttgtttctggggtcattgatattactcttaaatcttatgcaagagaaggaaggcttcctcttcttggttttgaagctaccaatt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| | ||| | ||| |
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| T |
29782188 |
gtgaatgagaaagagcttgtttctggggtcattgatattgctcttaaatcttatgcaagacaaggaaggcttcctcttcttggtttcaatgctgctgatt |
29782287 |
T |
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| Q |
217 |
tctttctttaccatccaaattcaggatttgatggtatgatttcttacccttttggaaatttgttgtttccttttgcttttggtgcattataa |
308 |
Q |
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| T |
29782288 |
tccttctttattatccaaatgctggatttgatggtatggttgcttaccctgttggaaatttgttatttccttttctttttggtgcatcataa |
29782379 |
T |
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