View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1252-Insertion-3 (Length: 570)

Name: NF1252-Insertion-3
Description: NF1252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1252-Insertion-3
NF1252-Insertion-3
[»] chr4 (2 HSPs)
chr4 (8-570)||(20938962-20939523)
chr4 (41-83)||(22214507-22214549)


Alignment Details
Target: chr4 (Bit Score: 509; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 8 - 570
Target Start/End: Original strand, 20938962 - 20939523
Alignment:
Q  8 taaacaaataaaagtttttgaatccaaaccccctttttatttatttatatcgatacaaagacaatgctacatctcatagctgcttaatcatatatttttc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20938962 taaacaaataaaagtttttgaatccaaaccccctttttatttatttatatcgatacaaagacaatgctacatctcatagctgcttaatcatatatttttc 20939061  T
Q  108 cttgcacaactttctcctttttgctgaaatcatataatttctatatttgatatttattagcatggatataaaagttgtataaaaaagttagactatgata 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  20939062 cttgcacaactttctcctttttgctgaaatcatataatttctatatttgatatgtattagcatggatataaaagttgtataaaaaagttagactatgata 20939161  T
Q  208 ttttaattataaatgtattgtcaataatttagtgaatcataacttattcatatgacaaatcaggaaattgggcgacatactcaaaatgtaaatgatattc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20939162 ttttaattataaatgtattgtcaataatttagtgaatcataacttattcatatgacaaatcaggaaattgggcgacatactcaaaatgtaaatgatattc 20939261  T
Q  308 acaatctcaatcaaacttgattgttgttaaaaagacatttgtatgcccgaataaatatgaagaaatgcaaaagataaagacaccgggaagnnnnnnngta 407  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||       |||    
T  20939262 acaatctcaatcaaacttggttgttgttaaaaagacatttgtatgcccggataaatatgaagaaatgcaaaagataaagacaccgggaag-ttttttgta 20939360  T
Q  408 actcctaaagctggggaattcgatttcactctttatttattcaaaacccgataaaattgattgaagattcatcaagccctcgagaaaaaggattgaatat 507  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  20939361 actcctaaagctggggaattcaatttcactctttatttattcaaaacccgataaaattgattgaagattcatcaaaccctcgagaaaaaggattgaagat 20939460  T
Q  508 tcaccaagccaaaacaactagaaatggttaccatgctcgttctaatgttgtatgaaatcttta 570  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  20939461 tcaccaagccaaaacaactagaaatggttacaatgctcgttctaatgttgtatgaaatcttta 20939523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 22214549 - 22214507
Alignment:
Q  41 tttttatttatttatatcgatacaaagacaatgctacatctca 83  Q
    ||||||||||||||| | ||||||||||||||||| |||||||    
T  22214549 tttttatttatttatgttgatacaaagacaatgctgcatctca 22214507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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