View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1252-Insertion-4 (Length: 396)
Name: NF1252-Insertion-4
Description: NF1252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1252-Insertion-4 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 7 - 396
Target Start/End: Original strand, 25328105 - 25328494
Alignment:
| Q |
7 |
atatcatagccatacattgcatacacattgacctcattcaccgtggtccaatacttaactcgatcaccaaattctctgaagcacacatcagcatatgatg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25328105 |
atatcatagccatacattgcatacacattgacctcattcaccgtggtccaatacttaactcgatcaccaaattctctgaagcacacatcaacatatgatg |
25328204 |
T |
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| Q |
107 |
tgaaatctttcctgcaagcacacatatatagatatgttgaccataataaaaccctttcttaattttgtctatttgtcatttatttcaatctattacaata |
206 |
Q |
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| T |
25328205 |
tgaaatctttcctgcaagcacacatatatagatatgttaaccataataaaactctttgttaattttgtgtatttgtcatttatttcaatctattacaata |
25328304 |
T |
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| Q |
207 |
tggaaactcaaatagaaatttaaagtatgggaaagttttggtaccatacacaannnnnnngctaacccatccttcatactcatcctcaagtgactgtggt |
306 |
Q |
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| T |
25328305 |
tggaaactcaaatagaaatttaaagtatgggaaagttttggtaccatacacaatttttttgctaacccatccttcatactcatcctcaagtgactgtggt |
25328404 |
T |
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| Q |
307 |
agatcccagtggtgcaatgtaacatgtgcttcgattcctagaaaatgaaatatattagagcatcgtttaagtgtcaatcaaactctaaag |
396 |
Q |
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| T |
25328405 |
agatcccagtggtgcaatgtaacatgtgcttcgattcctagaaaatgaaatatattagagcatcgtttaagtgtcaatcaaactctaaag |
25328494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 25322244 - 25322354
Alignment:
| Q |
9 |
atcatagccatacattgcatacacattgacctcattcaccgtggtccaatacttaactcgatcaccaaattctctgaagcacacatcagcatatgatgtg |
108 |
Q |
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| T |
25322244 |
atcataaccaaacaatgcatacacattgccctcattcaccgtagtccaatacttaactctatcgccaaattctttgaagcacacatcaacatatgcagtg |
25322343 |
T |
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| Q |
109 |
aaatctttcct |
119 |
Q |
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| T |
25322344 |
aaatctttcct |
25322354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 269 - 346
Target Start/End: Original strand, 25322609 - 25322686
Alignment:
| Q |
269 |
taacccatccttcatactcatcctcaagtgactgtggtagatcccagtggtgcaatgtaacatgtgcttcgattccta |
346 |
Q |
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| T |
25322609 |
taacccatcctccatattcatcctcaagtttttgtggtagatcccaatgatgtaatgtaacatgtggttggattccta |
25322686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 5219264 - 5219358
Alignment:
| Q |
29 |
acacattgacctcattcaccgtggtccaatacttaactcgatcaccaaattctctgaagcacacatcagcatatgatgtgaaatctttcctgcaa |
123 |
Q |
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| T |
5219264 |
acacattcccctcatttactgtggtccaatgtttaactctatccccaaactctctaaagcatacatctgcatatgctgtgaaatcttttctgcaa |
5219358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 5219785 - 5219863
Alignment:
| Q |
268 |
ctaacccatccttcatactcatcctcaagtgactgtggtagatcccagtggtgcaatgtaacatgtgcttcgattccta |
346 |
Q |
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| T |
5219785 |
ctaacccatcctccatattcatcttcaagtgcttgtggtagatcccagtgatttaaagtaacatgtggttggattccta |
5219863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 346
Target Start/End: Complemental strand, 39641993 - 39641915
Alignment:
| Q |
268 |
ctaacccatccttcatactcatcctcaagtgactgtggtagatcccagtggtgcaatgtaacatgtgcttcgattccta |
346 |
Q |
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| T |
39641993 |
ctaagccatccttcatattcatcctcaagtgcctgtgggagatcatagttgtgtagtgtgacatgtggttggattccta |
39641915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 345
Target Start/End: Complemental strand, 29122350 - 29122273
Alignment:
| Q |
268 |
ctaacccatccttcatactcatcctcaagtgactgtggtagatcccagtggtgcaatgtaacatgtgcttcgattcct |
345 |
Q |
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| T |
29122350 |
ctaagccatccttcatattcatcctcaagtgcctgtgggagatcatagttgtgtagtgtgacatgtggttggattcct |
29122273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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