View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1252-Insertion-5 (Length: 846)
Name: NF1252-Insertion-5
Description: NF1252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1252-Insertion-5 |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 8 - 456
Target Start/End: Original strand, 38944776 - 38945227
Alignment:
| Q |
8 |
aatcctccatgtctctctaccatgaaccacatca-gagtttcgacaaacaatcaatggatttttccatctcaaattgaaaatcagaaccaaagtgatatc |
106 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38944776 |
aatcctccatgtctctctaccatgaaccacatcaagagtttcgacaaacaatcaatggatttttccatctcaaattcaaaatcagaaccaaagtgatatc |
38944875 |
T |
|
| Q |
107 |
agtgaggttttgatacttgagcagagaaattcaatccaccaatcaactgatttctccatcacagaatgaacctaaccaaacaacgaacacagcaaccagt |
206 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38944876 |
agtgaggttttgatatttgagcagagaaattcaatccaccaatcaactgatttctccatcacagaatgaacctaaccaaacaacgaacacagcaaccagt |
38944975 |
T |
|
| Q |
207 |
ctgcgatgaaacctaaccttaaaacgccaactttcctttccgggcatcacctcagacaacgaatcaaaggagttctccatcacagaaaatggaactggat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38944976 |
ctgcgatgaaacctaaccttaaaacgccaactttcccttccgggcatcacctcagacaacgaatcaaaggagttctccatcacagaaaatggaactggat |
38945075 |
T |
|
| Q |
307 |
ctcagaaacaaaaattccacacacagatatgagagatgtgaagaacgaaagtggaactacaaactgatcacaacaacta---aacaatcacgtatatata |
403 |
Q |
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| T |
38945076 |
ctcagaaacaaaaattatacacacagatatgagagatgtgaagaacgaaagtggaactgcaaactgatcacagaaactacggaacaa-aacgtatatata |
38945174 |
T |
|
| Q |
404 |
ttgaaagggcatggggcagtatagagatttcaccgcaagacagagttcaacaa |
456 |
Q |
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| T |
38945175 |
ttgaaagggcatggggtagtatagagatttcaccgcaagacagagttcaacaa |
38945227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 612 - 778
Target Start/End: Original strand, 38945334 - 38945500
Alignment:
| Q |
612 |
agacaaccatgccttacgccgaaaatccacatacaaacaaattcaatcacatggggtagccacgggaatttacggcactcgaaatgaaattgcatcgatc |
711 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |
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| T |
38945334 |
agacaaccatgcctcacgccgaaaatccacatacaaacaaattcaatcacatggggtagccacgagaattgacggcactcgaaattaaattgcatcgatc |
38945433 |
T |
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| Q |
712 |
ccaccagaatgttgatctacaggataaattggccaggaatggcttttatcttttgtaagatttattg |
778 |
Q |
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| T |
38945434 |
ccaccagaatgttgatctacaggataaattggccaggaatggcttttatcttttgtaagatttattg |
38945500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 42384644 - 42384711
Alignment:
| Q |
244 |
ttccgggcatcacctcagacaacgaatcaaaggagttctccatcacagaaaatggaactggatctcaga |
312 |
Q |
| |
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| T |
42384644 |
ttccgggcaacacctccgacaacaaatcaaaggagttctccatcaca-aaactggaactggatatcaga |
42384711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 541 - 580
Target Start/End: Original strand, 38945300 - 38945339
Alignment:
| Q |
541 |
agatgacgtacaaacacgctggattcttcaataaagacaa |
580 |
Q |
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| T |
38945300 |
agatgacgtacaaacacgctggattcttcaataaagacaa |
38945339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 8 - 178
Target Start/End: Original strand, 5461333 - 5461509
Alignment:
| Q |
8 |
aatcctccatgtctctctaccatgaaccacatcagagtttcgacaaacaatcaatggatttttccatctcaaattgaaaa------tcagaaccaaagtg |
101 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
5461333 |
aatcctccatgtctctctaccatgaaacacatcagagttccaacaaacaatcaatggatttttccatctcaaattcaaaatcaaaatcagaaccaaagtg |
5461432 |
T |
|
| Q |
102 |
atatcagtgaggttttgatacttgagcagagaaattcaatccaccaatcaactgatttctccatcacagaatgaacc |
178 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| |
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|
| T |
5461433 |
atatcagtgaggttttgatacttgagatgagaaattcaatccaccaatcaatgaatttcttcatcacagaatgaacc |
5461509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 6e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 29378499 - 29378323
Alignment:
| Q |
8 |
aatcctccatgtctctctaccatgaaccacatcagagtttcgacaaacaatcaatggatttttccatctcaaattgaaaatcagaa------ccaaagtg |
101 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||| ||||||| || |||||||| |
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| T |
29378499 |
aatcctccatgtctctctaccatgaaacacatcagagttccaacaaacaatcaatggatttttccatctcaaattcaaaatcaaaatcataaccaaagtg |
29378400 |
T |
|
| Q |
102 |
atatcagtgaggttttgatacttgagcagagaaattcaatccaccaatcaactgatttctccatcacagaatgaacc |
178 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| |
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|
| T |
29378399 |
atatcagtgaggttttgatacttgagatgagaaattcaatccaccaatcaatgaatttcttcatcacagaatgaacc |
29378323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 8 - 153
Target Start/End: Complemental strand, 43414407 - 43414263
Alignment:
| Q |
8 |
aatcctccatgtctctctaccatgaaccacatcagagtttcgacaaacaatcaatggatttttccatctcaaattgaaaatcagaaccaaagtgatatca |
107 |
Q |
| |
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|||||||||| ||| |||||||||||||| ||||||||| | ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
43414407 |
aatcctccatatctatctaccatgaaccaaatcagagttacatgaaacaatcaatggatttttccatctcatattcaaaatcagaaccaaagtgatatca |
43414308 |
T |
|
| Q |
108 |
gtgaggttttgatacttgagcagagaaattcaatccaccaatcaac |
153 |
Q |
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| T |
43414307 |
gtgaggttttgatacttgagatgagaaa-tcaatccaccaatcaac |
43414263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 1749737 - 1749804
Alignment:
| Q |
244 |
ttccgggcatcacctcagacaacgaatcaaaggagttctccatcacagaaaatggaactggatctcaga |
312 |
Q |
| |
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||||||||| |||||| |||||| ||||||||||||||||||||||| ||| ||||||||||| ||||| |
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| T |
1749737 |
ttccgggcaacacctccgacaacaaatcaaaggagttctccatcaca-aaactggaactggatatcaga |
1749804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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