View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1252-Insertion-6 (Length: 731)
Name: NF1252-Insertion-6
Description: NF1252
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1252-Insertion-6 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 674; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 11 - 731
Target Start/End: Original strand, 49671490 - 49672208
Alignment:
| Q |
11 |
agttttggtgttgtgctcattgagctaatatcatctaagcttccagttgatatgaacaggcataaggatgagattaacttgtcaaacctggccttaaaga |
110 |
Q |
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| T |
49671490 |
agttttggtgttgtggtcattgagctaatatcatctaagcttccagttgatatgaagaggcataaggatgagattaacttgtcaaacctggccttaaaga |
49671589 |
T |
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| Q |
111 |
aaatacaagagggtgcattaattgagttggtggatccttatcttggttttgattcagacaatgagataaagcggatgatagtttcggtggcagagttagc |
210 |
Q |
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| T |
49671590 |
aaatacaagagggtgcattaattgagttggtggatccttatcttggttttgattcagacaatgagataaagcggatgatagtttcggtggcagagttagc |
49671689 |
T |
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| Q |
211 |
ttttcaatgtttgcaaagggacaaggaattgagaccttccatggaagaggttttgaagatgttgatgagaattgaaagtgggaaggatgtgcctgagcat |
310 |
Q |
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| T |
49671690 |
ttttcaatgtttgcaaagggacaaggaattgagaccttccatggaagaggttttgaagatgttgatgagaattgaaagtgggaaggatgtgcctgagcat |
49671789 |
T |
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| Q |
311 |
agagttgaagaagatgtgtgtccaccctctccaccttcaccagatggggatgggaatgagattgagattggactattccaaaaaatgatgccacagccat |
410 |
Q |
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| T |
49671790 |
atagttgaagaagatgtgtgtccaccctctccaccttcaccagatggggatgggaatgagattgagattggactattccaaaaaatgatgccacagccat |
49671889 |
T |
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| Q |
411 |
cacctaaagctgtggttgataaatgggatagtaaatccagtaccttctaataccagtggtcgttgatagcatagccttgcaaactaattactgatatgca |
510 |
Q |
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| T |
49671890 |
cacctaaagctgtggttgataaatgggatagtaaatccagtaccttctaataccagtggtcgttgatagcatagccttgcaaactaattactgatatgca |
49671989 |
T |
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| Q |
511 |
gcatttaaacattgtcattcataataagagggcacactttttacttttggtatacaagtgattagattttagctctattgtcattgtaaacgagtttaaa |
610 |
Q |
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| T |
49671990 |
gcatttaaacattgtcattcataataagagggcacactttttacttttggtatacaagtgattagattttagctctattgtcattgtaaacgagtttaaa |
49672089 |
T |
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| Q |
611 |
tataatgtatcttccctcccccaacttttgtagtatatatannnnnnnnaataatcttagataatatgttatacaaaaagggttttgttacaactatatt |
710 |
Q |
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| T |
49672090 |
tataatgtatcttccctcccccaacttttgta--atatatattttttttaataatcttagataatatgttatacaaaaagggttttgttacaactatatt |
49672187 |
T |
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| Q |
711 |
aagggcagtttttgtcctttt |
731 |
Q |
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| T |
49672188 |
aagggcagtttttgtcctttt |
49672208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 49667514 - 49667766
Alignment:
| Q |
7 |
atatagttttggtgttgtgctcattgagctaatatcatctaa-gcttccagttgatatgaacaggcataaggatgagattaacttgtcaaacctggcctt |
105 |
Q |
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| T |
49667514 |
atatagttttggagttgtgctcattgaactaatatcatcaaaagcctgctgttgatataaacagaagtagggaagagattaacttgtcaactctagccac |
49667613 |
T |
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| Q |
106 |
aaagaaaatacaagagggtgcattaattgagttggtggatccttatcttggttttgattcagacaatgagataaagcggatgatagtttcggtggcagag |
205 |
Q |
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| T |
49667614 |
aaagaagattcaagaaagtgcaattgatgagctcgtagatccttctcttggttttcattcagacagtgaggttaataggatgatagtttcagtggcagaa |
49667713 |
T |
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| Q |
206 |
ttagcttttcaatgtttgcaaagggacaaggaattgagaccttccatggaaga |
258 |
Q |
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| T |
49667714 |
ttggcttttcagtgtttgcaaaaggacaaagagttaagaccttctatggaaga |
49667766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 49683928 - 49683984
Alignment:
| Q |
219 |
gtttgcaaagggacaaggaattgagaccttccatggaagaggttttgaagatgttga |
275 |
Q |
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| T |
49683928 |
gtttgcaacgggacaaggaattgaggccttcaatggatgaggttttggaggtgttga |
49683984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 200 - 290
Target Start/End: Original strand, 49675878 - 49675968
Alignment:
| Q |
200 |
gcagagttagcttttcaatgtttgcaaagggacaaggaattgagaccttccatggaagaggttttgaagatgttgatgagaattgaaagtg |
290 |
Q |
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| T |
49675878 |
gcagagttggcttttcagtgtttgcagcgggataaggaattgaggccctcaatggatgaggttttggacgtgctgaggagaattgatagtg |
49675968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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