View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12520_high_11 (Length: 238)
Name: NF12520_high_11
Description: NF12520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12520_high_11 |
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| [»] scaffold0041 (1 HSPs) |
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| [»] scaffold0214 (2 HSPs) |
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| [»] scaffold0281 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 30260 - 30054
Alignment:
| Q |
15 |
atgaacaaaaaaggtgagcaaaactacttcaaaataaattaaattaattaaacaatgtatcagtttcatttgtttttgctgtcnnnnnnntgtgttattt |
114 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||| |
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| T |
30260 |
atgaacaaaaaaggtgagcaaaaatacttcaaaataaattaaattaattaaacaatgtataagtttcatttgtttttggtgtcaaaaaaatgttttattt |
30161 |
T |
|
| Q |
115 |
atttttgaatagccatgcgtagtagttagtgggcatggagtcacaacaccgtaagaaacnnnnnnntgcacacaattctcccatattcaaacaccaaaac |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30160 |
atttttgaatagccatgcgtagtagttagtgggcatggagtcacaacaccgtaagaaacaaaaaaatgcacacaattctcccatattcaaacaccaaaac |
30061 |
T |
|
| Q |
215 |
caaaatg |
221 |
Q |
| |
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||||||| |
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| T |
30060 |
caaaatg |
30054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 23917 - 24123
Alignment:
| Q |
15 |
atgaacaaaaaaggtgagcaaaactacttcaaaataaattaaattaattaaacaatgtatcagtttcatttgtttttgctgtcnnnnnnntgtgttattt |
114 |
Q |
| |
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|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||| |
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| T |
23917 |
atgaacaaaaaaggcgagaaaaactacttcaaaataaattaaattaattaaacaatgtataagtttcatttgtttttgttgtcaaaaaaatgttttattt |
24016 |
T |
|
| Q |
115 |
atttttgaatagccatgcgtagtagttagtgggcatggagtcacaacaccgtaagaaacnnnnnnntgcacacaattctcccatattcaaacaccaaaac |
214 |
Q |
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| T |
24017 |
atttttgaatagccatgcgtagtagttagtgggcatggagtcacaacactgtaagaaacaacaaaatgcacacaattctcccatattcaaacaccaaaac |
24116 |
T |
|
| Q |
215 |
caaaatg |
221 |
Q |
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||||||| |
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| T |
24117 |
caaaatg |
24123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 3752 - 3958
Alignment:
| Q |
15 |
atgaacaaaaaaggtgagcaaaactacttcaaaataaattaaattaattaaacaatgtatcagtttcatttgtttttgctgtcnnnnnnntgtgttattt |
114 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| | | || ||| |
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| T |
3752 |
atgaacaaaaaaggcgagcaaaactacttcaaaataaattaaattaattaaacaatgtataagtttcatttgtttttgttgtcaaaattttttatttttt |
3851 |
T |
|
| Q |
115 |
atttttgaatagccatgcgtagtagttagtgggcatggagtcacaacaccgtaagaaacnnnnnnntgcacacaattctcccatattcaaacaccaaaac |
214 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
3852 |
atttttgaatagccatgcttagtagttagtgggcatggagtcacaacaccgtaagtaacaacaaaatgcacacaattctcccatattcaaacaccaaaac |
3951 |
T |
|
| Q |
215 |
caaaatg |
221 |
Q |
| |
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||||||| |
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| T |
3952 |
caaaatg |
3958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 25419398 - 25419598
Alignment:
| Q |
21 |
aaaaaaggtgagcaaaactacttcaaaataaattaaattaattaaacaatgtatcagtttcatttgtttttgctgtcnnnnnnntgtgttatttattttt |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | | ||||||||||| |
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| T |
25419398 |
aaaaaaggtgagcaaaactacttcaaaataaattaaattaattaaacaatgtataagtttcatttgtttttgctgtcaagaaaatattgtatttattttt |
25419497 |
T |
|
| Q |
121 |
gaatagccatgcgtagtagttagtgggcatggagtcacaacaccgtaagaaacnnnnnnntgcacacaattctcccatattcaaacaccaaaaccaaaat |
220 |
Q |
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| T |
25419498 |
gaatagccatgcgtagtagttagtgggcatggagtcacatcactgtaagaaacaataaaatgcacacaattctcccatattcaaacaccaaaaccaaaat |
25419597 |
T |
|
| Q |
221 |
g |
221 |
Q |
| |
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| T |
25419598 |
g |
25419598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 31897283 - 31897213
Alignment:
| Q |
21 |
aaaaaaggtgagcaaaactacttcaaaataaattaaattaattaaacaatgtatcagtttcatttgttttt |
91 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| | |||| ||||| |
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| T |
31897283 |
aaaaaaggtgagaaaaactactaaaaaataaattaaattaattaaacaatgtataagtataattttttttt |
31897213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0281 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0281
Description:
Target: scaffold0281; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 3282 - 3212
Alignment:
| Q |
21 |
aaaaaaggtgagcaaaactacttcaaaataaattaaattaattaaacaatgtatcagtttcatttgttttt |
91 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| | |||| ||||| |
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| T |
3282 |
aaaaaaggtgagaaaaactactaaaaaataaattaaattaattaaacaatgtataagtataattttttttt |
3212 |
T |
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