View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12520_high_12 (Length: 232)
Name: NF12520_high_12
Description: NF12520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12520_high_12 |
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| [»] chr4 (9 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 98 - 232
Target Start/End: Complemental strand, 3984445 - 3984311
Alignment:
| Q |
98 |
tgctttaaaacacaactataagcagtccattaaaatatattagttttttgttctgcagtttgatagtctttccaatgtttgaggaagcgtaccagaaggg |
197 |
Q |
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| T |
3984445 |
tgctttaaaacaaaactataagcagtccattaaaatatattagttttttgttctgcagtttgatagtttttccaatgtttgaggaagcgtaccagaagga |
3984346 |
T |
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| Q |
198 |
gattgcagaagtataggtgtgatactcagctcact |
232 |
Q |
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| T |
3984345 |
gattgcagaagtattggtgtgatactcagctcact |
3984311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 3984570 - 3984482
Alignment:
| Q |
1 |
aagatgaagatgaagatgaagaagttgatttaggcacaagcctatagtctgatgtaagtaaccacggttaacattcgagttatcaacattac |
92 |
Q |
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| T |
3984570 |
aagacgaagatgaagatgaagaagttgatttaggcacaa---tgtagtctgatgtaagtaaccacgattaacattcgagttatcaacattac |
3984482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 4015016 - 4014970
Alignment:
| Q |
98 |
tgctttaaaacacaactataagcagtccattaaaatatattagtttt |
144 |
Q |
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| T |
4015016 |
tgctttaaaacaaaactataagtagtccattaaaatatatttgtttt |
4014970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 3958039 - 3958088
Alignment:
| Q |
11 |
tgaagatgaagaagttgatttaggcacaagcctatagtctgatgtaagta |
60 |
Q |
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| T |
3958039 |
tgaagatgaagaagttgatttagacacaagtccatagtttgatgtaagta |
3958088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 3958139 - 3958220
Alignment:
| Q |
11 |
tgaagatgaagaagttgatttaggcacaagcctatagtctgatgtaagtaaccacggttaacattcgagttatcaacattac |
92 |
Q |
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| T |
3958139 |
tgaagatgaagaatttgatttacacagaagtctatagtttgatgtaagtagacatgcttaacattcgagttataaaaattac |
3958220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 3998531 - 3998450
Alignment:
| Q |
11 |
tgaagatgaagaagttgatttaggcacaagcctatagtctgatgtaagtaaccacggttaacattcgagttatcaacattac |
92 |
Q |
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| T |
3998531 |
tgaagatgaagaatttgatttagacacaactctatagtatgatgcaagtagacacagttaacagttgagttaccaacattac |
3998450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 4022677 - 4022628
Alignment:
| Q |
11 |
tgaagatgaagaagttgatttaggcacaagcctatagtctgatgtaagta |
60 |
Q |
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| T |
4022677 |
tgaagatgaagaagttgatttagtcacaagtctatagattgatgtaagta |
4022628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 4015107 - 4015035
Alignment:
| Q |
21 |
gaagttgatttaggca-caagcctatagtctgatgtaagtaaccacggttaacattcgagttatcaacattac |
92 |
Q |
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| T |
4015107 |
gaagttgatttagacaacaagtctatagtttgatgtaagtaaatacggttaacagtcgagctctcaacattac |
4015035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 161
Target Start/End: Complemental strand, 4022555 - 4022494
Alignment:
| Q |
100 |
ctttaaaacacaactataagcagtccattaaaatatattagttttttgttctgcagtttgat |
161 |
Q |
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| T |
4022555 |
ctttaaaacacaactatatgtagtcgattacaatatatttaatttttgttatgcagtttgat |
4022494 |
T |
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