View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12520_high_15 (Length: 204)
Name: NF12520_high_15
Description: NF12520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12520_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 4e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 8570504 - 8570333
Alignment:
| Q |
19 |
cttcgtgagttaggttttgaatgagggttgttgtagcgagagaagtgtttcatgttttagcaagagagagtttttgcgcgagtcgggaagtgagagtagt |
118 |
Q |
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| T |
8570504 |
cttcatgagttaggttttgaatgagggttgttgtagcgagagaagtgtttcatgttttagcaagagagagtttttgcgcgagtcgggaagtgagagtagt |
8570405 |
T |
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| Q |
119 |
ctgttcagcaagagacaacaaatct-gggtttgaaaataagacgattgtccacctatttctgagcataccag |
189 |
Q |
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| T |
8570404 |
ctgttcagcaagagacaacaaatctggggtttgaaaataagacaattgtccacctatttctgagcataccag |
8570333 |
T |
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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 11989756 - 11989695
Alignment:
| Q |
25 |
gagttaggttttgaatgagggttgttgtagcgagagaagtgtttcatgttttagcaagagag |
86 |
Q |
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| T |
11989756 |
gagttgggttttgcgtgagggttgttgcagcaagagaaggatttcatgttttagcaagagag |
11989695 |
T |
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