View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12520_high_3 (Length: 550)
Name: NF12520_high_3
Description: NF12520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12520_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 14 - 534
Target Start/End: Original strand, 43434150 - 43434670
Alignment:
| Q |
14 |
caacaaaaaattctacgaggataaacaagcgggcacaattaaacttacttctctttcaaacttatataaagaccctgtggacgcataaaaatgtccccgt |
113 |
Q |
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| T |
43434150 |
caacaaaaaattctacgaggataaacaagcgggcacaattaaacttacttctctttcaaacttatataaagaccctgtggacgcataaaaatgtccccgt |
43434249 |
T |
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| Q |
114 |
atttctggcaagcctcaccaacagttggagtatacacaattgggagtaattcttcaacgtgatcaatgagaagtttgtaaaacagacgttcatttctttc |
213 |
Q |
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| T |
43434250 |
atttctggcaagcctcaccaacagttggagtatacacaattgggagtaattcttcaacgtgatcaatgagaagtttgtaaaacagacgttcatttctttc |
43434349 |
T |
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| Q |
214 |
ctgcaaccaacaatatatctgagtgaaagcattagaattcaattcaaaatattgccaatcaggtcatgtgaattaacttccaataacatatggttttaca |
313 |
Q |
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| T |
43434350 |
ctgcaaccaacaatatatcagagtgaaagcattagaattcaattcaaaatattgccaatcaggccatgtgaattaacttccaataacatatggttttaca |
43434449 |
T |
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| Q |
314 |
ttaaagacgagtttcaaatttataaataaagcatggacaaaaaaccaaagaacgcgacagttttgacaatgttcaaaaagggacgagatagattgttgac |
413 |
Q |
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| T |
43434450 |
ttaaagacgagtttcaaatttataaataaagcatgaacaaaaaaccaaagaacgcgacagttttgacaatgttcaaaaagggacgagatagattgttgac |
43434549 |
T |
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| Q |
414 |
aaggacacacctgaagatccatcattgccatatatctctgcagcggaacttgatattggcgtatgtgctggatcattttcctcacctgagtttcttgagg |
513 |
Q |
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| T |
43434550 |
aaggacacacctgaagatccatcattgccatatatctctgcagcggaacttgatattggcgtatgtgctggatcattttcctcacctgagtttcttgagg |
43434649 |
T |
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| Q |
514 |
aatagttgttgggggaagaag |
534 |
Q |
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| T |
43434650 |
aatagttgttgggggaagaag |
43434670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 54 - 220
Target Start/End: Complemental strand, 4510370 - 4510204
Alignment:
| Q |
54 |
aaacttacttctctttcaaacttatataaagaccctgtggacgcataaaaatgtccccgtatttctggcaagcctcaccaacagttggagtatacacaat |
153 |
Q |
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| T |
4510370 |
aaacttacttctctttcaagcttatataaagtccctgaggatgcatgaagatggacccatatttctggcaagcttcaccaacagtcggagtataaacaac |
4510271 |
T |
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| Q |
154 |
tgggagtaattcttcaacgtgatcaatgagaagtttgtaaaacagacgttcatttctttcctgcaac |
220 |
Q |
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| T |
4510270 |
cgggagtaactcctcaacatgatcaataagaagcttgtaaaacagcccttcatttctctcctacaac |
4510204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 59 - 197
Target Start/End: Original strand, 43208553 - 43208691
Alignment:
| Q |
59 |
tacttctctttcaaacttatataaagaccctgtggacgcataaaaatgtccccgtatttctggcaagcctcaccaacagttggagtatacacaattggga |
158 |
Q |
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| T |
43208553 |
tacttctctttcaaactaatatatagaccctgaggacgcttgtatatgctcccatatttttggcaagcctcaccaacaaccggagtatatacaattggga |
43208652 |
T |
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| Q |
159 |
gtaattcttcaacgtgatcaatgagaagtttgtaaaaca |
197 |
Q |
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| T |
43208653 |
gcaattcctcgacgttgtcaataagaagtttgtaaaaca |
43208691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 493
Target Start/End: Complemental strand, 4510077 - 4510006
Alignment:
| Q |
422 |
acctgaagatccatcattgccatatatctctgcagcggaacttgatattggcgtatgtgctggatcattttc |
493 |
Q |
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| T |
4510077 |
acctgaagatccatcattgccatgtacttctgcaatggaacttgatactgtcttatgttttggatcattttc |
4510006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 207
Target Start/End: Complemental strand, 51496727 - 51496579
Alignment:
| Q |
59 |
tacttctctttcaaacttatataaagaccctgtggacgcataaaaatgtccccgtatttctggcaagcctcaccaacagttggagtatacacaattggga |
158 |
Q |
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| T |
51496727 |
tacttctccttcaaacttatatatagaccctgaggacgtctataaatgcttccatatttctggcaggcttctccaactgttggagtgtaaacaacaggta |
51496628 |
T |
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| Q |
159 |
gtaattcttcaacgtgatcaatgagaagtttgtaaaacagacgttcatt |
207 |
Q |
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| T |
51496627 |
gcaattcttcgacattatcgatcataagcttgtaaaacagcctttcatt |
51496579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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