View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12520_high_6 (Length: 403)
Name: NF12520_high_6
Description: NF12520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12520_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 49521284 - 49520894
Alignment:
| Q |
1 |
agcagaggtgggaaaagcaagttgggaagcaattcctattcccaattgaagtgcttgatagaattctaatccacccttctgatgcaatgctatcagaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49521284 |
agcagaggtgggaaaagcaagttgggaagcaattcctattcccaattgaagtgcttgatagaattctaatccacccttctgatgcaatgctatcagaaga |
49521185 |
T |
|
| Q |
101 |
agatggcgaaacttggagtgttcagttgtttagatccattgatggtggagctgtttctaacttccctcaagcaccaaatgaagttatagaattaggcctt |
200 |
Q |
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| T |
49521184 |
agatggcgaaacttggagtgttcagttgtttagatccattgatggtggtgctgtttctaacttccctcaagcaccaaatgaagttatagaattaggcctt |
49521085 |
T |
|
| Q |
201 |
gttagcggaaaagacaacatcattgatagaagcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatt |
300 |
Q |
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| T |
49521084 |
gttagtggaaaagacaacatcattgatagaagcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatt |
49520985 |
T |
|
| Q |
301 |
tcctagggagttcctatggttggcattcaactgatattaaagttgaggatattggtgcattgcatctcataccaaaggagttgtcagtgaa |
391 |
Q |
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| T |
49520984 |
tcctagggagttcctatggttggcattcaactgatattaaagttgaggatattggtgcattgcatctcataccaaaggagttgtcattgaa |
49520894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 114 - 385
Target Start/End: Complemental strand, 49510025 - 49509754
Alignment:
| Q |
114 |
tggagtgttcagttgtttagatccattgatggtggagctgtttctaacttccctcaagcaccaaatgaagttatagaattaggccttgttagcggaaaag |
213 |
Q |
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| T |
49510025 |
tggaatgttcagttgtttagatcaatcgatgctggtgctgcttctggcttccctcaagatccaacagaagccgccgaaaaaggtcttgttactggaaaag |
49509926 |
T |
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| Q |
214 |
acaacatcattgatagaagcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatttcctagggagttc |
313 |
Q |
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| |||||||||||||||||||||||||||||||| ||||| ||||| ||| |||| || || |||||||||||||||||||||||||| ||||| ||||| |
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| T |
49509925 |
ataacatcattgatagaagcattcaagatgcctacataaacgctattcgacgagctaagaatttcatctacattgaaaatcagtattttctaggtagttc |
49509826 |
T |
|
| Q |
314 |
ctatggttggcattcaactgatattaaagttgaggatattggtgcattgcatctcataccaaaggagttgtc |
385 |
Q |
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||||||||| | || |||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |
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| T |
49509825 |
atatggttggaaatcgtctgatattaaagttgaggatattggtgctttgcacctcataccaaaagagttgtc |
49509754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 44662644 - 44662746
Alignment:
| Q |
216 |
aacatcattgatagaagcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatttcctagggagttcct |
315 |
Q |
| |
|
||||| || ||||| || ||||||||||| ||||| |||||||| ||| | ||||| || |||||||||||||||||||| |||||||| || |||| || |
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| T |
44662644 |
aacataatagataggagtattcaagatgcttatatcaatgctattcgacgcgcaaagaatttcatctacattgaaaatcaatatttccttggaagttgct |
44662743 |
T |
|
| Q |
316 |
atg |
318 |
Q |
| |
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||| |
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|
| T |
44662744 |
atg |
44662746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 2416399 - 2416326
Alignment:
| Q |
231 |
agcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatttcct |
304 |
Q |
| |
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|||||||||||||| ||||| |||||||| || | ||||| ||||||||||| |||||||||||||||||||| |
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| T |
2416399 |
agcattcaagatgcttatattaatgctattcggcgtgcaaagaacttcatctatattgaaaatcagtatttcct |
2416326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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