View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12520_low_1 (Length: 713)

Name: NF12520_low_1
Description: NF12520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12520_low_1
NF12520_low_1
[»] chr1 (1 HSPs)
chr1 (4-702)||(34092365-34093063)


Alignment Details
Target: chr1 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 4 - 702
Target Start/End: Complemental strand, 34093063 - 34092365
Alignment:
Q  4 tggacatcatcacatatacctaacctaatgcctcttcttcatttttctagctaccaatgtctttttcatctttgaattaatatatgctctaatagccaac 103  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34093063 tggacatcatcacatttacctaacctaatgcctcttcttcatttttctagctaccaatgtctttttcatctttgaattaatatatgctctaatagccaac 34092964  T
Q  104 gataatgatttgcatacaatgtaattgtttcttttatttcaagtggttgtgtatatataatgtgagatttgtttagccaattattcaatatcaatctgac 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34092963 gataatgatttgcatacaatgtaattgtttcttttatttcaagtggttgtgtatatataatgtgagatttgttttgccaattattcaatatcaatctgac 34092864  T
Q  204 tttggcaaagtttctcattgagaaaagtcctaatcatgtatttnnnnnnnnnnnnnnnnnnngtttatgaagagttatatctctttctttttatttttgt 303  Q
    ||||||||||||||| |||||||||||||||||||||||||||                   ||||||||||||||||||||||||||||||||||||||    
T  34092863 tttggcaaagtttcttattgagaaaagtcctaatcatgtatttaaaaactaaaaataaaaaagtttatgaagagttatatctctttctttttatttttgt 34092764  T
Q  304 ttgcagacaaaatgataatggtgatccaaataatacgaaacgttgaagtttcatgttcgaacccatgaataaagatgattaacctatcaatattattatt 403  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  34092763 ttgcagacgaaatgattatggtgatccaaataatacgaaacgttgaagtttcatgttcgaacctatgaataaaggtgattaacctatcaatattattatt 34092664  T
Q  404 gaaatttgaattaggatgaactataaaatatctcactttataaatcagttttttaacgagcaattataattaatttaaaaaatcttttattgtaggcttg 503  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34092663 gaaatttgaattaggacgaactataaaatatctcactttataaatcagttttttaacgagcaattataattaatttaaaaaatcttttattgtaggcttg 34092564  T
Q  504 ttaaagannnnnnnaaaaccaatattgatgttttaattaaatttgaaagatattttnnnnnnncgatgttatgttaaagatgaaataaatattttgatta 603  Q
    |||||||       ||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||| ||||||||||||||||||    
T  34092563 ttaaagatttttttaaaaccaattttgatgttttaattaaatttgaaagatattttaaaaaaacgatgttatgttaaagattaaataaatattttgatta 34092464  T
Q  604 accttgtattaaataatttttggtagaaaaaatagaaaacttagtctgtatatgatgtgatttgttttcaaaggagattgtatatgatgtgatgtccat 702  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34092463 accttgtattaaataatttttggtagaaaaaatagaaaacttagtctgtatatgatgtgatttgttttcaaaggagattgtatatgatgtgatgtccat 34092365  T

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