View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12520_low_10 (Length: 315)
Name: NF12520_low_10
Description: NF12520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12520_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 5e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 49552985 - 49553268
Alignment:
| Q |
19 |
ctttatgcattcaatgattaataatggagtaggttttcttgtcttccacgtgcctttggaatttccattcatttatataaatttagatactcgcgnnnnn |
118 |
Q |
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| T |
49552985 |
ctttatgcattcaatgattgataatggagtaggttttcttgtcttccacgtgcctttggaatttccattcatttat------ttagatacttgcgagaaa |
49553078 |
T |
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| Q |
119 |
nnnn---tcattgtaaatacatgaaactcaagcattgactacgactgtgctcttttaaacaggacattatattttcccaagcagaacacattctagattg |
215 |
Q |
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| T |
49553079 |
aaaaaaatcattgtaaatacatgaaactcaagcattgactacgaccgtgct--tttaaataggacattatatcttcccaagcagaacacattctagattg |
49553176 |
T |
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| Q |
216 |
tgcatgaaaacatcgatgaagagatagagggggtccagaacaatgagagatgggcttatgtgaaggttacattggacaaaaatgttcttctc |
307 |
Q |
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| T |
49553177 |
tgcatgaaaacttcgatgaagagatagagggggtccagaacaatgagagatggggttatgtgaaggttaacatggagaaaaatgttcttctc |
49553268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 49537664 - 49537730
Alignment:
| Q |
19 |
ctttatgcattcaatgattaataatggagtaggttttcttgtcttccacgtgcctttggaatttcca |
85 |
Q |
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| T |
49537664 |
ctttatgcattcaatgattaataatggagtaggttttcttgtcttccatgtgcttttggaatttcca |
49537730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 49538498 - 49538578
Alignment:
| Q |
205 |
attctagat-tgtgcatgaaaacatcgatgaagagatagagggggtccagaacaatgagagatgggcttatgtgaaggtta |
284 |
Q |
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| T |
49538498 |
attctagatctgtccatgaaaactttgatgaagagatagagggagtacagagcaatgagagatgggcttatgtgaaggtta |
49538578 |
T |
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